{"id":65777,"name":"clipkit","description":"a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference","url":"https://github.com/jlsteenwyk/clipkit","last_synced_at":"2025-09-08T13:28:52.064Z","repository":{"id":40389475,"uuid":"254887970","full_name":"JLSteenwyk/ClipKIT","owner":"JLSteenwyk","description":"a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference","archived":false,"fork":false,"pushed_at":"2025-08-08T17:46:50.000Z","size":27106,"stargazers_count":77,"open_issues_count":10,"forks_count":5,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-08-08T17:47:40.865Z","etag":null,"topics":["bioinformatics","evolution","evolutionary-biology","genomics","phylogenetics","phylogenomics","python","systematics"],"latest_commit_sha":null,"homepage":"https://jlsteenwyk.com/ClipKIT/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JLSteenwyk.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-04-11T14:41:10.000Z","updated_at":"2025-08-08T16:09:55.000Z","dependencies_parsed_at":"2024-08-03T23:02:39.920Z","dependency_job_id":"0ec61ca2-d8ff-4c31-8fab-0d56bd7190ee","html_url":"https://github.com/JLSteenwyk/ClipKIT","commit_stats":{"total_commits":266,"total_committers":8,"mean_commits":33.25,"dds":0.4586466165413534,"last_synced_commit":"58300891ce6e560948f5e05aefa578a2d9e134f5"},"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"purl":"pkg:github/JLSteenwyk/ClipKIT","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JLSteenwyk","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274192582,"owners_count":25238621,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"JLSteenwyk","name":"Jacob L. Steenwyk","uuid":"17225603","kind":"user","description":"Berkeley Science Fellow and Postdoctoral Scholar. Evolutionary genomics and software development.","email":"","website":"https://jlsteenwyk.com","location":"Berkeley, CA","twitter":"JLSteenwyk","company":"University of California, Berkeley","icon_url":"https://avatars.githubusercontent.com/u/17225603?u=370657f310a69a5facb58b2d8e3a0ef1e7fdd1ac\u0026v=4","repositories_count":10,"last_synced_at":"2023-03-06T17:39:56.653Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JLSteenwyk","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T19:18:26.309Z","updated_at":"2023-03-06T17:39:56.680Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JLSteenwyk","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JLSteenwyk/repositories"},"packages":[{"id":2672260,"name":"clipkit","ecosystem":"pypi","description":"Alignment trimming software for phylogenetics.","homepage":"https://github.com/jlsteenwyk/clipkit","licenses":"mit","normalized_licenses":["MIT"],"repository_url":"https://github.com/jlsteenwyk/clipkit","keywords_array":[],"namespace":null,"versions_count":47,"first_release_published_at":"2020-06-06T15:52:12.000Z","latest_release_published_at":"2025-08-08T16:11:08.000Z","latest_release_number":"2.5.1","last_synced_at":"2025-08-08T16:15:26.622Z","created_at":"2022-04-10T10:22:13.456Z","updated_at":"2025-08-08T18:19:35.381Z","registry_url":"https://pypi.org/project/clipkit/","install_command":"pip install clipkit --index-url https://pypi.org/simple","documentation_url":"https://clipkit.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Intended Audience :: Science/Research","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.9","Topic :: Scientific/Engineering"],"normalized_name":"clipkit"},"repo_metadata":{"id":40389475,"uuid":"254887970","full_name":"JLSteenwyk/ClipKIT","owner":"JLSteenwyk","description":"a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference","archived":false,"fork":false,"pushed_at":"2025-08-08T17:46:50.000Z","size":27106,"stargazers_count":77,"open_issues_count":10,"forks_count":5,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-08-08T17:47:40.865Z","etag":null,"topics":["bioinformatics","evolution","evolutionary-biology","genomics","phylogenetics","phylogenomics","python","systematics"],"latest_commit_sha":null,"homepage":"https://jlsteenwyk.com/ClipKIT/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JLSteenwyk.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-04-11T14:41:10.000Z","updated_at":"2025-08-08T16:09:55.000Z","dependencies_parsed_at":"2024-08-03T23:02:39.920Z","dependency_job_id":"0ec61ca2-d8ff-4c31-8fab-0d56bd7190ee","html_url":"https://github.com/JLSteenwyk/ClipKIT","commit_stats":{"total_commits":266,"total_committers":8,"mean_commits":33.25,"dds":0.4586466165413534,"last_synced_commit":"58300891ce6e560948f5e05aefa578a2d9e134f5"},"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"purl":"pkg:github/JLSteenwyk/ClipKIT","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JLSteenwyk","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":269466789,"owners_count":24421741,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-08T02:00:09.200Z","response_time":72,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"JLSteenwyk","name":"Jacob L. Steenwyk","uuid":"17225603","kind":"user","description":"Berkeley Science Fellow and Postdoctoral Scholar. Evolutionary genomics and software development.","email":"","website":"https://jlsteenwyk.com","location":"Berkeley, CA","twitter":"JLSteenwyk","company":"University of California, Berkeley","icon_url":"https://avatars.githubusercontent.com/u/17225603?u=370657f310a69a5facb58b2d8e3a0ef1e7fdd1ac\u0026v=4","repositories_count":10,"last_synced_at":"2023-03-06T17:39:56.653Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JLSteenwyk","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T19:18:26.309Z","updated_at":"2023-03-06T17:39:56.680Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JLSteenwyk","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JLSteenwyk/repositories"},"tags":[{"name":"v2.4.1","sha":"47edfe886754c79d657e7ac786493f491ddb8df5","kind":"commit","published_at":"2025-02-18T16:12:29.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.4.1","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.4.1/manifests"},{"name":"v2.4.0","sha":"c798d01dafcfad36488f2950b749969575218301","kind":"commit","published_at":"2025-02-16T04:05:45.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.4.0","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.4.0/manifests"},{"name":"v2.3.0","sha":"96eb403cb573d7c1b462eabcfb89e1043ac79bb0","kind":"commit","published_at":"2024-04-29T19:08:32.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.3.0","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.3.0/manifests"},{"name":"v2.2.5","sha":"d29a57db663d235f3d45f8d1f1bc9cd8f66446e2","kind":"commit","published_at":"2024-04-04T03:22:46.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.2.5","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.2.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.2.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.5/manifests"},{"name":"v2.2.4","sha":"d40fe25c3a954fdf08b9b683a3ee730ede9d5dd3","kind":"commit","published_at":"2024-03-18T22:40:03.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.2.4","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.4/manifests"},{"name":"v2.2.1","sha":"b2a371c1f0941dec1b0506b80286104b6f11db30","kind":"commit","published_at":"2024-02-13T00:05:48.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.2.1","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.1/manifests"},{"name":"v2.2.0","sha":"5242d1f409fc13c5e48ee4555c238e83d5093ca6","kind":"commit","published_at":"2024-02-12T23:18:45.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.2.0","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.2.0/manifests"},{"name":"v2.1.3","sha":"338ea0add475428d5944d4d2c4505e71a5599b3e","kind":"commit","published_at":"2024-02-07T14:59:21.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.1.3","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.1.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.1.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.1.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.1.3/manifests"},{"name":"v2.1.1","sha":"f4cb92a2c2248e21e3ecf161c1a1cd08152d4b16","kind":"commit","published_at":"2023-10-02T23:50:33.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v2.1.1","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v2.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v2.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v2.1.1/manifests"},{"name":"v1.4.0","sha":"41d89bc90d42facd4bf25d08e8598a700c6e1343","kind":"commit","published_at":"2023-02-26T22:54:38.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v1.4.0","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v1.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v1.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.4.0/manifests"},{"name":"v1.3.0","sha":"be991d775c38acd10b7dab21374bf62fe57d4e2e","kind":"commit","published_at":"2021-12-07T16:21:20.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v1.3.0","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v1.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v1.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.3.0/manifests"},{"name":"v1.2.0","sha":"b2d6033e638a78acc36942f9f420d5d3bc0e09ad","kind":"commit","published_at":"2021-10-18T12:50:40.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v1.2.0","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.2.0/manifests"},{"name":"v1.1.6","sha":"0ad56ff24e96c623e3ee0d2da0c03b6a1783df87","kind":"commit","published_at":"2021-10-10T16:18:15.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v1.1.6","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v1.1.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v1.1.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.1.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.1.6/manifests"},{"name":"v1.1.5","sha":"141f1fb62dd89caacd27e3b99eb2e70b12db5365","kind":"commit","published_at":"2021-06-24T19:54:10.000Z","download_url":"https://codeload.github.com/JLSteenwyk/ClipKIT/tar.gz/v1.1.5","html_url":"https://github.com/JLSteenwyk/ClipKIT/releases/tag/v1.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JLSteenwyk/ClipKIT@v1.1.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/tags/v1.1.5/manifests"}]},"repo_metadata_updated_at":"2025-08-08T18:19:35.381Z","dependent_packages_count":0,"downloads":497,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":16.799914761808722,"dependent_repos_count":21.5515601217656,"dependent_packages_count":10.117827917587048,"stargazers_count":9.910060752277973,"forks_count":16.874602866589807,"docker_downloads_count":2.275684436395733,"average":12.921608476070814},"purl":"pkg:pypi/clipkit","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/clipkit","docker_dependents_count":0,"docker_downloads_count":0,"usage_url":"https://repos.ecosyste.ms/usage/pypi/clipkit","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/clipkit/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-06-22T10:10:18.785Z","issues_count":22,"pull_requests_count":43,"avg_time_to_close_issue":490321.14285714284,"avg_time_to_close_pull_request":2212438.8181818184,"issues_closed_count":21,"pull_requests_closed_count":33,"pull_request_authors_count":3,"issue_authors_count":18,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":0.27906976744186046,"merged_pull_requests_count":22,"bot_issues_count":0,"bot_pull_requests_count":27,"past_year_issues_count":5,"past_year_pull_requests_count":6,"past_year_avg_time_to_close_issue":1708126.75,"past_year_avg_time_to_close_pull_request":436.0,"past_year_issues_closed_count":4,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":3.4,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":3,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/issues","maintainers":[{"login":"JLSteenwyk","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/JLSteenwyk"},{"login":"TJBIII","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/TJBIII"}],"active_maintainers":[{"login":"JLSteenwyk","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/JLSteenwyk"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipkit/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipkit/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipkit/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipkit/related_packages","maintainers":[{"uuid":"JLSteenwyk","login":"JLSteenwyk","name":null,"email":null,"url":null,"packages_count":7,"html_url":"https://pypi.org/user/JLSteenwyk/","role":null,"created_at":"2022-11-19T02:16:48.896Z","updated_at":"2022-11-19T02:16:48.896Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/JLSteenwyk/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726145,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":549600,"full_name":"JLSteenwyk/ClipKIT","default_branch":"master","committers":[{"name":"JLSteenwyk","email":"jlsteenwyk@gmail.com","login":"JLSteenwyk","count":148},{"name":"Thomas Buida","email":"thomasbuida@gmail.com","login":"TJBIII","count":46},{"name":"Jacob Steenwyk","email":"jlsteenwyk@Jacobs-MBP.pavlov.gateway","login":null,"count":37},{"name":"Jacob Steenwyk","email":"jlsteenwyk@Jacobs-MBP.attlocal.net","login":null,"count":21},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":8},{"name":"Jacob Steenwyk","email":"jlsteenwyk@Jacobs-MacBook-Pro.local","login":null,"count":8},{"name":"Jacob L Steenwyk","email":"jacoblsteenwyk@Jacobs-MacBook-Pro.local","login":null,"count":2}],"total_commits":270,"total_committers":7,"total_bot_commits":8,"total_bot_committers":1,"mean_commits":38.57142857142857,"dds":0.45185185185185184,"past_year_committers":[{"name":"JLSteenwyk","email":"jlsteenwyk@gmail.com","login":"JLSteenwyk","count":4}],"past_year_total_commits":4,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":4.0,"past_year_dds":0.0,"last_synced_at":"2025-06-22T10:09:48.900Z","last_synced_commit":"47edfe886754c79d657e7ac786493f491ddb8df5","created_at":"2023-03-09T04:35:14.165Z","updated_at":"2025-06-22T10:09:49.745Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-07T00:00:09.744Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"JLSteenwyk/ClipKIT","html_url":"https://github.com/JLSteenwyk/ClipKIT","last_synced_at":"2025-08-31T17:41:21.492Z","status":null,"issues_count":22,"pull_requests_count":45,"avg_time_to_close_issue":490321.14285714284,"avg_time_to_close_pull_request":2028088.111111111,"issues_closed_count":21,"pull_requests_closed_count":36,"pull_request_authors_count":3,"issue_authors_count":18,"avg_comments_per_issue":2.7727272727272725,"avg_comments_per_pull_request":0.26666666666666666,"merged_pull_requests_count":25,"bot_issues_count":0,"bot_pull_requests_count":26,"past_year_issues_count":5,"past_year_pull_requests_count":6,"past_year_avg_time_to_close_issue":1708126.75,"past_year_avg_time_to_close_pull_request":281.75,"past_year_issues_closed_count":4,"past_year_pull_requests_closed_count":4,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":2.4,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":4,"created_at":"2023-05-14T10:41:20.344Z","updated_at":"2025-09-03T01:33:42.492Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/JLSteenwyk%2FClipKIT/issues","issue_labels_count":{"bug":7,"question":3,"enhancement":3},"pull_request_labels_count":{"dependencies":35,"codex":1},"issue_author_associations_count":{"NONE":22},"pull_request_author_associations_count":{"CONTRIBUTOR":35,"OWNER":17,"COLLABORATOR":5},"issue_authors":{"edgardomortiz":2,"vagkaratzas":2,"chtsai0105":2,"sanyalab":2,"sen-pai":1,"nbat64":1,"jsharbrough":1,"ialbert":1,"atongsa":1,"jolienvanhooff":1,"smorzechowski":1,"naturepoker":1,"haruosuz":1,"zhangwenda0518":1,"LifeMine-swyka":1,"andersgs":1,"Rohit-Satyam":1,"aebaci":1},"pull_request_authors":{"dependabot[bot]":35,"JLSteenwyk":17,"TJBIII":5},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10094553,"issues_count":31373669,"pull_requests_count":97058592,"authors_count":10699554,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":2,"enhancement":2,"question":1},"past_year_pull_request_labels_count":{"codex":1},"past_year_issue_author_associations_count":{"NONE":5},"past_year_pull_request_author_associations_count":{"OWNER":6},"past_year_issue_authors":{"vagkaratzas":2,"aebaci":1,"edgardomortiz":1,"naturepoker":1},"past_year_pull_request_authors":{"JLSteenwyk":6},"maintainers":[{"login":"JLSteenwyk","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/JLSteenwyk"},{"login":"TJBIII","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/TJBIII"}],"active_maintainers":[{"login":"JLSteenwyk","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/JLSteenwyk"}]},"events":{"total":{"CreateEvent":5,"ReleaseEvent":2,"IssuesEvent":8,"WatchEvent":16,"IssueCommentEvent":13,"PushEvent":27,"PullRequestEvent":2,"ForkEvent":1},"last_year":{"CreateEvent":5,"ReleaseEvent":2,"IssuesEvent":8,"WatchEvent":16,"IssueCommentEvent":13,"PushEvent":27,"PullRequestEvent":2,"ForkEvent":1}},"keywords":["bioinformatics","evolution","evolutionary-biology","genomics","phylogenetics","phylogenomics","python","systematics"],"dependencies":[{"ecosystem":"pypi","filepath":"Pipfile","sha":null,"kind":"manifest","created_at":"2022-07-26T04:46:11.032Z","updated_at":"2022-07-26T04:46:11.032Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/Pipfile","dependencies":[{"id":419861233,"package_name":"appdirs","ecosystem":"pypi","requirements":"==1.4.3","direct":true,"kind":"runtime","optional":false},{"id":419861234,"package_name":"astroid","ecosystem":"pypi","requirements":"==2.3.3","direct":true,"kind":"runtime","optional":false},{"id":419861235,"package_name":"attrs","ecosystem":"pypi","requirements":"==19.3.0","direct":true,"kind":"runtime","optional":false},{"id":419861236,"package_name":"biopython","ecosystem":"pypi","requirements":"==1.76","direct":true,"kind":"runtime","optional":false},{"id":419861237,"package_name":"black","ecosystem":"pypi","requirements":"==19.10b0","direct":true,"kind":"runtime","optional":false},{"id":419861238,"package_name":"bleach","ecosystem":"pypi","requirements":"==3.3.0","direct":true,"kind":"runtime","optional":false},{"id":419861239,"package_name":"certifi","ecosystem":"pypi","requirements":"==2020.4.5.1","direct":true,"kind":"runtime","optional":false},{"id":419861240,"package_name":"chardet","ecosystem":"pypi","requirements":"==3.0.4","direct":true,"kind":"runtime","optional":false},{"id":419861241,"package_name":"click","ecosystem":"pypi","requirements":"==7.1.1","direct":true,"kind":"runtime","optional":false},{"id":419861242,"package_name":"clipkit","ecosystem":"pypi","requirements":"==0.0.1","direct":true,"kind":"runtime","optional":false},{"id":419861243,"package_name":"docutils","ecosystem":"pypi","requirements":"==0.16","direct":true,"kind":"runtime","optional":false},{"id":419861244,"package_name":"idna","ecosystem":"pypi","requirements":"==2.9","direct":true,"kind":"runtime","optional":false},{"id":419861245,"package_name":"isort","ecosystem":"pypi","requirements":"==4.3.21","direct":true,"kind":"runtime","optional":false},{"id":419861246,"package_name":"keyring","ecosystem":"pypi","requirements":"==21.2.0","direct":true,"kind":"runtime","optional":false},{"id":419861247,"package_name":"lazy-object-proxy","ecosystem":"pypi","requirements":"==1.4.3","direct":true,"kind":"runtime","optional":false},{"id":419861248,"package_name":"mccabe","ecosystem":"pypi","requirements":"==0.6.1","direct":true,"kind":"runtime","optional":false},{"id":419861249,"package_name":"more-itertools","ecosystem":"pypi","requirements":"==8.2.0","direct":true,"kind":"runtime","optional":false},{"id":419861250,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.21.0","direct":true,"kind":"runtime","optional":false},{"id":419861251,"package_name":"pathspec","ecosystem":"pypi","requirements":"==0.8.0","direct":true,"kind":"runtime","optional":false},{"id":419861252,"package_name":"pkginfo","ecosystem":"pypi","requirements":"==1.5.0.1","direct":true,"kind":"runtime","optional":false},{"id":419861253,"package_name":"pluggy","ecosystem":"pypi","requirements":"==0.13.1","direct":true,"kind":"runtime","optional":false},{"id":419861254,"package_name":"py","ecosystem":"pypi","requirements":"==1.10.0","direct":true,"kind":"runtime","optional":false},{"id":419861255,"package_name":"pylint","ecosystem":"pypi","requirements":"==2.4.4","direct":true,"kind":"runtime","optional":false},{"id":419861256,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==2.4.7","direct":true,"kind":"runtime","optional":false},{"id":419861257,"package_name":"pytest","ecosystem":"pypi","requirements":"==5.4.1","direct":true,"kind":"runtime","optional":false},{"id":419861258,"package_name":"pytest-mock","ecosystem":"pypi","requirements":"==3.0.0","direct":true,"kind":"runtime","optional":false},{"id":419861259,"package_name":"readme-renderer","ecosystem":"pypi","requirements":"==26.0","direct":true,"kind":"runtime","optional":false},{"id":419861260,"package_name":"regex","ecosystem":"pypi","requirements":"==2020.4.4","direct":true,"kind":"runtime","optional":false},{"id":419861261,"package_name":"requests","ecosystem":"pypi","requirements":"==2.23.0","direct":true,"kind":"runtime","optional":false},{"id":419861262,"package_name":"requests-toolbelt","ecosystem":"pypi","requirements":"==0.9.1","direct":true,"kind":"runtime","optional":false},{"id":419861263,"package_name":"six","ecosystem":"pypi","requirements":"==1.14.0","direct":true,"kind":"runtime","optional":false},{"id":419861264,"package_name":"toml","ecosystem":"pypi","requirements":"==0.10.0","direct":true,"kind":"runtime","optional":false},{"id":419861265,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.45.0","direct":true,"kind":"runtime","optional":false},{"id":419861266,"package_name":"twine","ecosystem":"pypi","requirements":"==3.1.1","direct":true,"kind":"runtime","optional":false},{"id":419861267,"package_name":"typed-ast","ecosystem":"pypi","requirements":"==1.4.1","direct":true,"kind":"runtime","optional":false},{"id":419861268,"package_name":"urllib3","ecosystem":"pypi","requirements":"==1.25.9","direct":true,"kind":"runtime","optional":false},{"id":419861269,"package_name":"wcwidth","ecosystem":"pypi","requirements":"==0.1.9","direct":true,"kind":"runtime","optional":false},{"id":419861270,"package_name":"webencodings","ecosystem":"pypi","requirements":"==0.5.1","direct":true,"kind":"runtime","optional":false},{"id":419861271,"package_name":"wrapt","ecosystem":"pypi","requirements":"==1.11.2","direct":true,"kind":"runtime","optional":false},{"id":419861272,"package_name":"Cython","ecosystem":"pypi","requirements":"==0.29.16","direct":true,"kind":"runtime","optional":false},{"id":419861273,"package_name":"Pygments","ecosystem":"pypi","requirements":"==2.7.4","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"docs/Pipfile","sha":null,"kind":"manifest","created_at":"2022-07-26T04:46:11.299Z","updated_at":"2022-07-26T04:46:11.299Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/docs/Pipfile","dependencies":[{"id":419862951,"package_name":"Pygments","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":419862952,"package_name":"Sphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":419862953,"package_name":"sphinx_rtd_theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":419862954,"package_name":"sphinx-autobuild","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false}]},{"ecosystem":"pypi","filepath":"docs/Pipfile.lock","sha":null,"kind":"lockfile","created_at":"2022-07-26T04:46:11.701Z","updated_at":"2022-07-26T04:46:11.701Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/docs/Pipfile.lock","dependencies":[{"id":419866242,"package_name":"alabaster","ecosystem":"pypi","requirements":"==0.7.12","direct":false,"kind":"runtime","optional":false},{"id":419866243,"package_name":"babel","ecosystem":"pypi","requirements":"==2.9.0","direct":false,"kind":"runtime","optional":false},{"id":419866244,"package_name":"certifi","ecosystem":"pypi","requirements":"==2020.12.5","direct":false,"kind":"runtime","optional":false},{"id":419866245,"package_name":"chardet","ecosystem":"pypi","requirements":"==4.0.0","direct":false,"kind":"runtime","optional":false},{"id":419866246,"package_name":"docutils","ecosystem":"pypi","requirements":"==0.16","direct":false,"kind":"runtime","optional":false},{"id":419866247,"package_name":"idna","ecosystem":"pypi","requirements":"==2.10","direct":false,"kind":"runtime","optional":false},{"id":419866248,"package_name":"imagesize","ecosystem":"pypi","requirements":"==1.2.0","direct":false,"kind":"runtime","optional":false},{"id":419866249,"package_name":"jinja2","ecosystem":"pypi","requirements":"==2.11.3","direct":false,"kind":"runtime","optional":false},{"id":419866250,"package_name":"markupsafe","ecosystem":"pypi","requirements":"==1.1.1","direct":false,"kind":"runtime","optional":false},{"id":419866251,"package_name":"packaging","ecosystem":"pypi","requirements":"==20.9","direct":false,"kind":"runtime","optional":false},{"id":419866252,"package_name":"pygments","ecosystem":"pypi","requirements":"==2.6.1","direct":false,"kind":"runtime","optional":false},{"id":419866253,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==2.4.7","direct":false,"kind":"runtime","optional":false},{"id":419866254,"package_name":"pytz","ecosystem":"pypi","requirements":"==2021.1","direct":false,"kind":"runtime","optional":false},{"id":419866255,"package_name":"requests","ecosystem":"pypi","requirements":"==2.25.1","direct":false,"kind":"runtime","optional":false},{"id":419866256,"package_name":"snowballstemmer","ecosystem":"pypi","requirements":"==2.1.0","direct":false,"kind":"runtime","optional":false},{"id":419866257,"package_name":"sphinx","ecosystem":"pypi","requirements":"==3.0.2","direct":false,"kind":"runtime","optional":false},{"id":419866258,"package_name":"sphinx-rtd-theme","ecosystem":"pypi","requirements":"==0.4.3","direct":false,"kind":"runtime","optional":false},{"id":419866259,"package_name":"sphinxcontrib-applehelp","ecosystem":"pypi","requirements":"==1.0.2","direct":false,"kind":"runtime","optional":false},{"id":419866260,"package_name":"sphinxcontrib-devhelp","ecosystem":"pypi","requirements":"==1.0.2","direct":false,"kind":"runtime","optional":false},{"id":419866261,"package_name":"sphinxcontrib-htmlhelp","ecosystem":"pypi","requirements":"==1.0.3","direct":false,"kind":"runtime","optional":false},{"id":419866262,"package_name":"sphinxcontrib-jsmath","ecosystem":"pypi","requirements":"==1.0.1","direct":false,"kind":"runtime","optional":false},{"id":419866263,"package_name":"sphinxcontrib-qthelp","ecosystem":"pypi","requirements":"==1.0.3","direct":false,"kind":"runtime","optional":false},{"id":419866264,"package_name":"sphinxcontrib-serializinghtml","ecosystem":"pypi","requirements":"==1.1.4","direct":false,"kind":"runtime","optional":false},{"id":419866265,"package_name":"urllib3","ecosystem":"pypi","requirements":"==1.26.4","direct":false,"kind":"runtime","optional":false},{"id":419866266,"package_name":"argh","ecosystem":"pypi","requirements":"==0.26.2","direct":false,"kind":"develop","optional":false},{"id":419866267,"package_name":"livereload","ecosystem":"pypi","requirements":"==2.6.3","direct":false,"kind":"develop","optional":false},{"id":419866268,"package_name":"pathtools","ecosystem":"pypi","requirements":"==0.1.2","direct":false,"kind":"develop","optional":false},{"id":419866269,"package_name":"port-for","ecosystem":"pypi","requirements":"==0.3.1","direct":false,"kind":"develop","optional":false},{"id":419866270,"package_name":"pyyaml","ecosystem":"pypi","requirements":"==5.4","direct":false,"kind":"develop","optional":false},{"id":419866271,"package_name":"six","ecosystem":"pypi","requirements":"==1.15.0","direct":false,"kind":"develop","optional":false},{"id":419866272,"package_name":"sphinx-autobuild","ecosystem":"pypi","requirements":"==0.7.1","direct":false,"kind":"develop","optional":false},{"id":419866273,"package_name":"tornado","ecosystem":"pypi","requirements":"==6.1","direct":false,"kind":"develop","optional":false},{"id":419866274,"package_name":"watchdog","ecosystem":"pypi","requirements":"==2.0.2","direct":false,"kind":"develop","optional":false}]},{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-07-26T04:46:11.849Z","updated_at":"2022-07-26T04:46:11.849Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/docs/requirements.txt","dependencies":[{"id":419870091,"package_name":"appdirs","ecosystem":"pypi","requirements":"==1.4.3","direct":true,"kind":"runtime","optional":false},{"id":419870098,"package_name":"attrs","ecosystem":"pypi","requirements":"==19.3.0","direct":true,"kind":"runtime","optional":false},{"id":419870102,"package_name":"biopython","ecosystem":"pypi","requirements":"==1.76","direct":true,"kind":"runtime","optional":false},{"id":419870106,"package_name":"click","ecosystem":"pypi","requirements":"==7.1.2","direct":true,"kind":"runtime","optional":false},{"id":419870111,"package_name":"importlib-metadata","ecosystem":"pypi","requirements":"==1.6.0","direct":true,"kind":"runtime","optional":false},{"id":419870114,"package_name":"more-itertools","ecosystem":"pypi","requirements":"==8.2.0","direct":true,"kind":"runtime","optional":false},{"id":419870118,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.21.0","direct":true,"kind":"runtime","optional":false},{"id":419870122,"package_name":"packaging","ecosystem":"pypi","requirements":"==20.3","direct":true,"kind":"runtime","optional":false},{"id":419870126,"package_name":"pathspec","ecosystem":"pypi","requirements":"==0.8.0","direct":true,"kind":"runtime","optional":false},{"id":419870128,"package_name":"pluggy","ecosystem":"pypi","requirements":"==0.13.1","direct":true,"kind":"runtime","optional":false},{"id":419870132,"package_name":"py","ecosystem":"pypi","requirements":"==1.10.0","direct":true,"kind":"runtime","optional":false},{"id":419870135,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==2.4.7","direct":true,"kind":"runtime","optional":false},{"id":419870139,"package_name":"pytest","ecosystem":"pypi","requirements":"==5.4.1","direct":true,"kind":"runtime","optional":false},{"id":419870143,"package_name":"pytest-mock","ecosystem":"pypi","requirements":"==3.0.0","direct":true,"kind":"runtime","optional":false},{"id":419870146,"package_name":"regex","ecosystem":"pypi","requirements":"==2020.5.7","direct":true,"kind":"runtime","optional":false},{"id":419870150,"package_name":"six","ecosystem":"pypi","requirements":"==1.14.0","direct":true,"kind":"runtime","optional":false},{"id":419870153,"package_name":"toml","ecosystem":"pypi","requirements":"==0.10.0","direct":true,"kind":"runtime","optional":false},{"id":419870157,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.45.0","direct":true,"kind":"runtime","optional":false},{"id":419870160,"package_name":"typed-ast","ecosystem":"pypi","requirements":"==1.4.1","direct":true,"kind":"runtime","optional":false},{"id":419870164,"package_name":"wcwidth","ecosystem":"pypi","requirements":"==0.1.9","direct":true,"kind":"runtime","optional":false},{"id":419870167,"package_name":"zipp","ecosystem":"pypi","requirements":"==3.1.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"docs/requirements_manual.txt","sha":null,"kind":"manifest","created_at":"2022-07-26T04:46:12.119Z","updated_at":"2022-07-26T04:46:12.119Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/docs/requirements_manual.txt","dependencies":[{"id":419873016,"package_name":"appdirs","ecosystem":"pypi","requirements":"==1.4.3","direct":true,"kind":"runtime","optional":false},{"id":419873020,"package_name":"attrs","ecosystem":"pypi","requirements":"==19.3.0","direct":true,"kind":"runtime","optional":false},{"id":419873022,"package_name":"biopython","ecosystem":"pypi","requirements":"==1.76","direct":true,"kind":"runtime","optional":false},{"id":419873024,"package_name":"black","ecosystem":"pypi","requirements":"==19.10b0","direct":true,"kind":"runtime","optional":false},{"id":419873026,"package_name":"click","ecosystem":"pypi","requirements":"==7.1.2","direct":true,"kind":"runtime","optional":false},{"id":419873028,"package_name":"importlib-metadata","ecosystem":"pypi","requirements":"==1.6.0","direct":true,"kind":"runtime","optional":false},{"id":419873030,"package_name":"more-itertools","ecosystem":"pypi","requirements":"==8.2.0","direct":true,"kind":"runtime","optional":false},{"id":419873032,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.21.0","direct":true,"kind":"runtime","optional":false},{"id":419873034,"package_name":"packaging","ecosystem":"pypi","requirements":"==20.3","direct":true,"kind":"runtime","optional":false},{"id":419873036,"package_name":"pathspec","ecosystem":"pypi","requirements":"==0.8.0","direct":true,"kind":"runtime","optional":false},{"id":419873038,"package_name":"pluggy","ecosystem":"pypi","requirements":"==0.13.1","direct":true,"kind":"runtime","optional":false},{"id":419873040,"package_name":"py","ecosystem":"pypi","requirements":"==1.10.0","direct":true,"kind":"runtime","optional":false},{"id":419873042,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==2.4.7","direct":true,"kind":"runtime","optional":false},{"id":419873044,"package_name":"pytest","ecosystem":"pypi","requirements":"==5.4.1","direct":true,"kind":"runtime","optional":false},{"id":419873046,"package_name":"pytest-mock","ecosystem":"pypi","requirements":"==3.0.0","direct":true,"kind":"runtime","optional":false},{"id":419873048,"package_name":"regex","ecosystem":"pypi","requirements":"==2020.5.7","direct":true,"kind":"runtime","optional":false},{"id":419873050,"package_name":"six","ecosystem":"pypi","requirements":"==1.14.0","direct":true,"kind":"runtime","optional":false},{"id":419873051,"package_name":"toml","ecosystem":"pypi","requirements":"==0.10.0","direct":true,"kind":"runtime","optional":false},{"id":419873053,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.45.0","direct":true,"kind":"runtime","optional":false},{"id":419873055,"package_name":"typed-ast","ecosystem":"pypi","requirements":"==1.4.1","direct":true,"kind":"runtime","optional":false},{"id":419873057,"package_name":"wcwidth","ecosystem":"pypi","requirements":"==0.1.9","direct":true,"kind":"runtime","optional":false},{"id":419873059,"package_name":"zipp","ecosystem":"pypi","requirements":"==3.1.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-07-26T04:46:12.395Z","updated_at":"2022-07-26T04:46:12.395Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/requirements.txt","dependencies":[{"id":419875320,"package_name":"more-itertools","ecosystem":"pypi","requirements":"==8.2.0","direct":true,"kind":"runtime","optional":false},{"id":419875315,"package_name":"appdirs","ecosystem":"pypi","requirements":"==1.4.3","direct":true,"kind":"runtime","optional":false},{"id":419875316,"package_name":"attrs","ecosystem":"pypi","requirements":"==19.3.0","direct":true,"kind":"runtime","optional":false},{"id":419875317,"package_name":"biopython","ecosystem":"pypi","requirements":"==1.79","direct":true,"kind":"runtime","optional":false},{"id":419875318,"package_name":"click","ecosystem":"pypi","requirements":"==7.1.2","direct":true,"kind":"runtime","optional":false},{"id":419875319,"package_name":"importlib-metadata","ecosystem":"pypi","requirements":"==1.6.0","direct":true,"kind":"runtime","optional":false},{"id":419875321,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.18.2","direct":true,"kind":"runtime","optional":false},{"id":419875322,"package_name":"packaging","ecosystem":"pypi","requirements":"==20.3","direct":true,"kind":"runtime","optional":false},{"id":419875323,"package_name":"pathspec","ecosystem":"pypi","requirements":"==0.8.0","direct":true,"kind":"runtime","optional":false},{"id":419875324,"package_name":"pluggy","ecosystem":"pypi","requirements":"==0.13.1","direct":true,"kind":"runtime","optional":false},{"id":419875325,"package_name":"py","ecosystem":"pypi","requirements":"==1.8.1","direct":true,"kind":"runtime","optional":false},{"id":419875326,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==2.4.7","direct":true,"kind":"runtime","optional":false},{"id":419875327,"package_name":"pytest","ecosystem":"pypi","requirements":"==5.4.1","direct":true,"kind":"runtime","optional":false},{"id":419875328,"package_name":"pytest-mock","ecosystem":"pypi","requirements":"==3.0.0","direct":true,"kind":"runtime","optional":false},{"id":419875329,"package_name":"regex","ecosystem":"pypi","requirements":"==2020.5.7","direct":true,"kind":"runtime","optional":false},{"id":419875330,"package_name":"six","ecosystem":"pypi","requirements":"==1.14.0","direct":true,"kind":"runtime","optional":false},{"id":419875331,"package_name":"toml","ecosystem":"pypi","requirements":"==0.10.0","direct":true,"kind":"runtime","optional":false},{"id":419875332,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.45.0","direct":true,"kind":"runtime","optional":false},{"id":419875333,"package_name":"typed-ast","ecosystem":"pypi","requirements":"==1.4.1","direct":true,"kind":"runtime","optional":false},{"id":419875334,"package_name":"wcwidth","ecosystem":"pypi","requirements":"==0.1.9","direct":true,"kind":"runtime","optional":false},{"id":419875335,"package_name":"zipp","ecosystem":"pypi","requirements":"==3.1.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-01-30T01:01:02.273Z","updated_at":"2023-01-30T01:01:02.273Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/.github/workflows/ci.yml","dependencies":[{"id":7236134494,"package_name":"actions/checkout","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":7236134495,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":7236134496,"package_name":"codecov/codecov-action","ecosystem":"actions","requirements":"v1.0.7","direct":true,"kind":"composite","optional":false},{"id":7236134497,"package_name":"dschep/install-pipenv-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7236134498,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"releases/v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"docs/setup.py","sha":null,"kind":"manifest","created_at":"2023-09-24T02:33:12.648Z","updated_at":"2023-09-24T02:33:12.648Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/docs/setup.py","dependencies":[]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2023-09-24T02:33:12.735Z","updated_at":"2023-09-24T02:33:12.735Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/setup.py","dependencies":[]},{"ecosystem":"pypi","filepath":"Pipfile.lock","sha":null,"kind":"lockfile","created_at":"2024-05-03T23:38:43.392Z","updated_at":"2024-05-03T23:38:43.392Z","repository_link":"https://github.com/JLSteenwyk/ClipKIT/blob/master/Pipfile.lock","dependencies":[{"id":17891396181,"package_name":"appdirs","ecosystem":"pypi","requirements":"==1.4.3","direct":false,"kind":"runtime","optional":false},{"id":17891396182,"package_name":"astroid","ecosystem":"pypi","requirements":"==2.3.3","direct":false,"kind":"runtime","optional":false},{"id":17891396183,"package_name":"attrs","ecosystem":"pypi","requirements":"==19.3.0","direct":false,"kind":"runtime","optional":false},{"id":17891396184,"package_name":"biopython","ecosystem":"pypi","requirements":"==1.76","direct":false,"kind":"runtime","optional":false},{"id":17891396185,"package_name":"black","ecosystem":"pypi","requirements":"==19.10b0","direct":false,"kind":"runtime","optional":false},{"id":17891396186,"package_name":"bleach","ecosystem":"pypi","requirements":"==3.3.0","direct":false,"kind":"runtime","optional":false},{"id":17891396187,"package_name":"certifi","ecosystem":"pypi","requirements":"==2023.7.22","direct":false,"kind":"runtime","optional":false},{"id":17891396188,"package_name":"chardet","ecosystem":"pypi","requirements":"==3.0.4","direct":false,"kind":"runtime","optional":false},{"id":17891396189,"package_name":"click","ecosystem":"pypi","requirements":"==7.1.1","direct":false,"kind":"runtime","optional":false},{"id":17891396190,"package_name":"clipkit","ecosystem":"pypi","requirements":"==0.0.1","direct":false,"kind":"runtime","optional":false},{"id":17891396367,"package_name":"cython","ecosystem":"pypi","requirements":"==0.29.16","direct":false,"kind":"runtime","optional":false},{"id":17891396368,"package_name":"docutils","ecosystem":"pypi","requirements":"==0.16","direct":false,"kind":"runtime","optional":false},{"id":17891396369,"package_name":"idna","ecosystem":"pypi","requirements":"==2.9","direct":false,"kind":"runtime","optional":false},{"id":17891396370,"package_name":"isort","ecosystem":"pypi","requirements":"==4.3.21","direct":false,"kind":"runtime","optional":false},{"id":17891396371,"package_name":"keyring","ecosystem":"pypi","requirements":"==21.2.0","direct":false,"kind":"runtime","optional":false},{"id":17891396372,"package_name":"lazy-object-proxy","ecosystem":"pypi","requirements":"==1.4.3","direct":false,"kind":"runtime","optional":false},{"id":17891396373,"package_name":"mccabe","ecosystem":"pypi","requirements":"==0.6.1","direct":false,"kind":"runtime","optional":false},{"id":17891396374,"package_name":"more-itertools","ecosystem":"pypi","requirements":"==8.2.0","direct":false,"kind":"runtime","optional":false},{"id":17891396375,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.21.0","direct":false,"kind":"runtime","optional":false},{"id":17891396376,"package_name":"packaging","ecosystem":"pypi","requirements":"==24.0","direct":false,"kind":"runtime","optional":false},{"id":17891396377,"package_name":"pathspec","ecosystem":"pypi","requirements":"==0.8.0","direct":false,"kind":"runtime","optional":false},{"id":17891396378,"package_name":"pkginfo","ecosystem":"pypi","requirements":"==1.5.0.1","direct":false,"kind":"runtime","optional":false},{"id":17891396379,"package_name":"pluggy","ecosystem":"pypi","requirements":"==0.13.1","direct":false,"kind":"runtime","optional":false},{"id":17891396380,"package_name":"py","ecosystem":"pypi","requirements":"==1.10.0","direct":false,"kind":"runtime","optional":false},{"id":17891396381,"package_name":"pygments","ecosystem":"pypi","requirements":"==2.7.4","direct":false,"kind":"runtime","optional":false},{"id":17891396382,"package_name":"pylint","ecosystem":"pypi","requirements":"==2.4.4","direct":false,"kind":"runtime","optional":false},{"id":17891396383,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==2.4.7","direct":false,"kind":"runtime","optional":false},{"id":17891396384,"package_name":"pytest","ecosystem":"pypi","requirements":"==5.4.1","direct":false,"kind":"runtime","optional":false},{"id":17891396385,"package_name":"pytest-mock","ecosystem":"pypi","requirements":"==3.0.0","direct":false,"kind":"runtime","optional":false},{"id":17891396386,"package_name":"readme-renderer","ecosystem":"pypi","requirements":"==26.0","direct":false,"kind":"runtime","optional":false},{"id":17891396387,"package_name":"regex","ecosystem":"pypi","requirements":"==2020.4.4","direct":false,"kind":"runtime","optional":false},{"id":17891396388,"package_name":"requests","ecosystem":"pypi","requirements":"==2.23.0","direct":false,"kind":"runtime","optional":false},{"id":17891396389,"package_name":"requests-toolbelt","ecosystem":"pypi","requirements":"==0.9.1","direct":false,"kind":"runtime","optional":false},{"id":17891396390,"package_name":"setuptools","ecosystem":"pypi","requirements":"==69.5.1","direct":false,"kind":"runtime","optional":false},{"id":17891396391,"package_name":"six","ecosystem":"pypi","requirements":"==1.14.0","direct":false,"kind":"runtime","optional":false},{"id":17891396392,"package_name":"toml","ecosystem":"pypi","requirements":"==0.10.0","direct":false,"kind":"runtime","optional":false},{"id":17891396393,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.66.2","direct":false,"kind":"runtime","optional":false},{"id":17891396394,"package_name":"twine","ecosystem":"pypi","requirements":"==3.1.1","direct":false,"kind":"runtime","optional":false},{"id":17891396395,"package_name":"typed-ast","ecosystem":"pypi","requirements":"==1.4.1","direct":false,"kind":"runtime","optional":false},{"id":17891396396,"package_name":"urllib3","ecosystem":"pypi","requirements":"==1.25.9","direct":false,"kind":"runtime","optional":false},{"id":17891396397,"package_name":"wcwidth","ecosystem":"pypi","requirements":"==0.1.9","direct":false,"kind":"runtime","optional":false},{"id":17891396398,"package_name":"webencodings","ecosystem":"pypi","requirements":"==0.5.1","direct":false,"kind":"runtime","optional":false},{"id":17891396399,"package_name":"wrapt","ecosystem":"pypi","requirements":"==1.11.2","direct":false,"kind":"runtime","optional":false}]}],"score":12.624424363461415,"created_at":"2025-09-08T11:18:39.513Z","updated_at":"2025-10-07T08:25:01.670Z","avatar_url":"https://github.com/JLSteenwyk.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":497,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["interactive","serializer","packaging","network-simulation","shellcodes","hacking","autograding","observability","embedded","optim"],"project_url":"https://science.ecosyste.ms/api/v1/projects/65777","html_url":"https://science.ecosyste.ms/projects/65777"}