{"id":65780,"name":"clipper","description":"A tool to identify CLIP-seq peaks","url":"https://github.com/yeolab/clipper","last_synced_at":"2025-09-08T13:30:07.164Z","repository":{"id":4212460,"uuid":"5333255","full_name":"YeoLab/clipper","owner":"YeoLab","description":"A tool to identify CLIP-seq peaks","archived":false,"fork":false,"pushed_at":"2023-04-27T22:24:43.000Z","size":437280,"stargazers_count":69,"open_issues_count":53,"forks_count":43,"subscribers_count":37,"default_branch":"master","last_synced_at":"2025-08-23T07:24:56.791Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/YeoLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2012-08-07T20:37:16.000Z","updated_at":"2025-08-21T12:27:12.000Z","dependencies_parsed_at":"2023-07-05T18:02:22.433Z","dependency_job_id":null,"html_url":"https://github.com/YeoLab/clipper","commit_stats":{"total_commits":620,"total_committers":13,"mean_commits":47.69230769230769,"dds":0.4854838709677419,"last_synced_commit":"594138c3f220f5496c4e09264a44f8103f8c2095"},"previous_names":[],"tags_count":10,"template":false,"template_full_name":null,"purl":"pkg:github/YeoLab/clipper","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YeoLab","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/sbom","scorecard":{"id":154720,"data":{"date":"2025-08-11","repo":{"name":"github.com/YeoLab/clipper","commit":"65d6490d3f294df1f94edcb9a3759add7f462525"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3,"checks":[{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":1,"reason":"Found 2/20 approved changesets -- score normalized to 1","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Binary-Artifacts","score":9,"reason":"binaries present in source code","details":["Warn: binary detected: clipper/src/peaks.so:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":9,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Warn: project license file does not contain an FSF or OSI license."],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'","Warn: branch protection not enabled for branch 'charlene_py3'","Warn: branch protection not enabled for branch 'charlene_build_test'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 12 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-16T11:26:58.570Z","repository_id":4212460,"created_at":"2025-08-16T11:26:58.570Z","updated_at":"2025-08-16T11:26:58.570Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274192631,"owners_count":25238633,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"YeoLab","name":"Yeo lab at UCSD","uuid":"2112324","kind":"organization","description":"","email":null,"website":"https://yeolab.com/","location":"United States of America","twitter":"yeo_lab","company":null,"icon_url":"https://avatars.githubusercontent.com/u/2112324?v=4","repositories_count":62,"last_synced_at":"2024-03-26T16:19:47.455Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/YeoLab","funding_links":[],"total_stars":628,"followers":28,"following":0,"created_at":"2022-11-04T01:46:02.072Z","updated_at":"2024-03-26T16:19:47.713Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YeoLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YeoLab/repositories"},"packages":[{"id":2672263,"name":"clipper","ecosystem":"pypi","description":"A set of scripts for calling peaks on CLIP-seq data","homepage":"https://github.com/YeoLab/clipper","licenses":"GPL2","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/YeoLab/clipper","keywords_array":["CLIP-seq","peaks","bioinformatics"],"namespace":null,"versions_count":2,"first_release_published_at":"2012-08-08T02:16:22.000Z","latest_release_published_at":"2014-07-11T02:57:23.000Z","latest_release_number":"0.2.0","last_synced_at":"2025-08-23T01:18:21.058Z","created_at":"2022-04-10T10:22:13.624Z","updated_at":"2025-08-23T07:25:00.021Z","registry_url":"https://pypi.org/project/clipper/","install_command":"pip install clipper --index-url https://pypi.org/simple","documentation_url":"https://clipper.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":[],"normalized_name":"clipper","project_status":null},"repo_metadata":{"id":4212460,"uuid":"5333255","full_name":"YeoLab/clipper","owner":"YeoLab","description":"A tool to identify CLIP-seq peaks","archived":false,"fork":false,"pushed_at":"2023-04-27T22:24:43.000Z","size":437280,"stargazers_count":68,"open_issues_count":52,"forks_count":43,"subscribers_count":37,"default_branch":"master","last_synced_at":"2025-07-13T07:51:50.045Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/YeoLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2012-08-07T20:37:16.000Z","updated_at":"2025-05-23T13:40:53.000Z","dependencies_parsed_at":"2023-07-05T18:02:22.433Z","dependency_job_id":null,"html_url":"https://github.com/YeoLab/clipper","commit_stats":{"total_commits":620,"total_committers":13,"mean_commits":47.69230769230769,"dds":0.4854838709677419,"last_synced_commit":"594138c3f220f5496c4e09264a44f8103f8c2095"},"previous_names":[],"tags_count":10,"template":false,"template_full_name":null,"purl":"pkg:github/YeoLab/clipper","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YeoLab","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/sbom","scorecard":{"id":154720,"data":{"date":"2025-08-11","repo":{"name":"github.com/YeoLab/clipper","commit":"65d6490d3f294df1f94edcb9a3759add7f462525"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3,"checks":[{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":1,"reason":"Found 2/20 approved changesets -- score normalized to 1","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Binary-Artifacts","score":9,"reason":"binaries present in source code","details":["Warn: binary detected: clipper/src/peaks.so:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":9,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Warn: project license file does not contain an FSF or OSI license."],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'","Warn: branch protection not enabled for branch 'charlene_py3'","Warn: branch protection not enabled for branch 'charlene_build_test'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 12 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-16T11:26:58.570Z","repository_id":4212460,"created_at":"2025-08-16T11:26:58.570Z","updated_at":"2025-08-16T11:26:58.570Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271745922,"owners_count":24813530,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-23T02:00:09.327Z","response_time":69,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"YeoLab","name":"Yeo lab at UCSD","uuid":"2112324","kind":"organization","description":"","email":null,"website":"https://yeolab.com/","location":"United States of America","twitter":"yeo_lab","company":null,"icon_url":"https://avatars.githubusercontent.com/u/2112324?v=4","repositories_count":62,"last_synced_at":"2024-03-26T16:19:47.455Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/YeoLab","funding_links":[],"total_stars":628,"followers":28,"following":0,"created_at":"2022-11-04T01:46:02.072Z","updated_at":"2024-03-26T16:19:47.713Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YeoLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YeoLab/repositories"},"tags":[{"name":"2.1.0","sha":"c3cfd87a09420ce4881c7e585ac761125779d9e1","kind":"tag","published_at":"2020-10-13T02:50:19.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/2.1.0","html_url":"https://github.com/YeoLab/clipper/releases/tag/2.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@2.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/2.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/2.1.0/manifests"},{"name":"2.0.1","sha":"8dcfcbb60c4247c8c9b1074d97f3b643f773ea95","kind":"commit","published_at":"2020-08-27T21:13:54.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/2.0.1","html_url":"https://github.com/YeoLab/clipper/releases/tag/2.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@2.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/2.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/2.0.1/manifests"},{"name":"2.0","sha":"06bd45fb1296f925f9f8f6dca021bc1834321754","kind":"commit","published_at":"2020-07-01T20:38:41.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/2.0","html_url":"https://github.com/YeoLab/clipper/releases/tag/2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/2.0/manifests"},{"name":"1.3","sha":"c0269d80f7cc26f99708f5b45373efc82a0ab3cf","kind":"commit","published_at":"2020-06-30T04:02:22.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/1.3","html_url":"https://github.com/YeoLab/clipper/releases/tag/1.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@1.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.3/manifests"},{"name":"1.2.1","sha":"49fd7a140093bd224272dad8657d102834f105f9","kind":"commit","published_at":"2017-05-13T00:47:55.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/1.2.1","html_url":"https://github.com/YeoLab/clipper/releases/tag/1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.2.1/manifests"},{"name":"1.2","sha":"f789997d3f1f431733d2ca0924874fd0d4105618","kind":"commit","published_at":"2017-04-25T23:15:26.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/1.2","html_url":"https://github.com/YeoLab/clipper/releases/tag/1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.2/manifests"},{"name":"1.1","sha":"411c86d7a494e0b6244ba5dc2502a902b9883731","kind":"commit","published_at":"2016-01-27T20:08:54.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/1.1","html_url":"https://github.com/YeoLab/clipper/releases/tag/1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.1/manifests"},{"name":"1.0","sha":"291098ee0d27447f7472261e1a2f1fd84c8a076b","kind":"commit","published_at":"2015-10-09T17:25:38.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/1.0","html_url":"https://github.com/YeoLab/clipper/releases/tag/1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/1.0/manifests"},{"name":"0.3.0","sha":"0f50978b7077806ea6f77c959006174906990cc3","kind":"commit","published_at":"2014-10-03T23:55:17.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/0.3.0","html_url":"https://github.com/YeoLab/clipper/releases/tag/0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/0.3.0/manifests"},{"name":"0.2.0","sha":"d4deca1ed6c350ab664473454bd4c612486d5eda","kind":"tag","published_at":"2014-07-11T02:15:36.000Z","download_url":"https://codeload.github.com/YeoLab/clipper/tar.gz/0.2.0","html_url":"https://github.com/YeoLab/clipper/releases/tag/0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/YeoLab/clipper@0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/tags/0.2.0/manifests"}]},"repo_metadata_updated_at":"2025-08-23T07:25:00.021Z","dependent_packages_count":0,"downloads":97,"downloads_period":"last-month","dependent_repos_count":5,"rankings":{"downloads":25.81228995810198,"dependent_repos_count":6.653398000487498,"dependent_packages_count":9.995259271770403,"stargazers_count":8.93877692015399,"forks_count":6.387775935648277,"docker_downloads_count":null,"average":11.55750001723243},"purl":"pkg:pypi/clipper","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/clipper","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/clipper","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/clipper/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-13T09:25:28.557Z","issues_count":94,"pull_requests_count":11,"avg_time_to_close_issue":35624613.28888889,"avg_time_to_close_pull_request":1371461.2,"issues_closed_count":45,"pull_requests_closed_count":10,"pull_request_authors_count":6,"issue_authors_count":69,"avg_comments_per_issue":2.925531914893617,"avg_comments_per_pull_request":0.36363636363636365,"merged_pull_requests_count":9,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/issues","maintainers":[{"login":"gpratt","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gpratt"},{"login":"byee4","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/byee4"},{"login":"ecwheele","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ecwheele"},{"login":"shassathe","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/shassathe"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipper/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipper/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipper/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/clipper/related_packages","maintainers":[{"uuid":"algaebrown","login":"algaebrown","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/algaebrown/","role":null,"created_at":"2023-02-20T09:20:26.637Z","updated_at":"2023-02-20T09:20:26.637Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/algaebrown/packages"},{"uuid":"gpratt","login":"gpratt","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/gpratt/","role":null,"created_at":"2023-02-20T09:20:26.757Z","updated_at":"2023-02-20T09:20:26.757Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/gpratt/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726145,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":549601,"full_name":"YeoLab/clipper","default_branch":"master","committers":[{"name":"Gabriel Pratt","email":"gpratt@ucsd.edu","login":null,"count":319},{"name":"spikesd17","email":"michaeltlovci@gmail.com","login":null,"count":120},{"name":"gpratt","email":"gpratt@gmail.com","login":null,"count":101},{"name":"Brian Yee","email":"bay001@ucsd.edu","login":null,"count":21},{"name":"algaebrown","email":"Xca125Xcta","login":null,"count":20},{"name":"Hsuan-lin Her","email":"hsher@ucsd.edu","login":null,"count":11},{"name":"Hsuan-lin Her","email":"b101102109@tmu.edu.tw","login":null,"count":10},{"name":"Jill-Moore","email":"Jill.Moore@umassmed.edu","login":null,"count":9},{"name":"Gabriel Pratt gpratt@ucsd.edu","email":"gpratt@oolite.calit2.optiputer.net","login":null,"count":8},{"name":"Alain Domissy","email":"alaindomissy@gmail.com","login":null,"count":5},{"name":"Gabriel Pratt","email":"gabriel.pratt@gmail.com","login":null,"count":2},{"name":"kstangline","email":"kyle.stangline@eclipsebio.com","login":null,"count":1},{"name":"ppliu","email":"ppliu@ucsd.edu","login":null,"count":1}],"total_commits":628,"total_committers":13,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":48.30769230769231,"dds":0.4920382165605095,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2024-06-15T03:34:06.233Z","last_synced_commit":"65d6490d3f294df1f94edcb9a3759add7f462525","created_at":"2023-03-09T04:35:14.324Z","updated_at":"2024-06-15T03:34:06.234Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"YeoLab/clipper","html_url":"https://github.com/YeoLab/clipper","last_synced_at":"2025-08-23T07:24:59.554Z","status":"error","issues_count":94,"pull_requests_count":11,"avg_time_to_close_issue":35624613.28888889,"avg_time_to_close_pull_request":1371461.2,"issues_closed_count":45,"pull_requests_closed_count":10,"pull_request_authors_count":6,"issue_authors_count":69,"avg_comments_per_issue":2.925531914893617,"avg_comments_per_pull_request":0.36363636363636365,"merged_pull_requests_count":9,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T10:41:21.021Z","updated_at":"2025-09-02T08:00:45.390Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/YeoLab%2Fclipper/issues","issue_labels_count":{"upgrade":6,"options":5,"bug":5,"enhancement":4,"question":3},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":79,"COLLABORATOR":8,"CONTRIBUTOR":7,"MEMBER":1},"pull_request_author_associations_count":{"CONTRIBUTOR":9,"NONE":1,"COLLABORATOR":1},"issue_authors":{"gpratt":6,"ShanSabri":4,"mlovci":4,"algaebrown":3,"jalalsiddiqui":3,"mattgeorge28":3,"gnilihzeux":2,"rekado":2,"gk7279":2,"sangoc":2,"MattBrauer":2,"junjunlab":2,"omarwagih":2,"EricDeveaud":2,"byee4":1,"lll16":1,"hershbc":1,"tefina":1,"kepbod":1,"liuzhe93":1,"jechia":1,"VandaLovejoy":1,"ELMMA-FUNNY":1,"noncodo":1,"shassathe":1,"Braulium":1,"amdreamer":1,"xiaolichen0":1,"dmaticzka":1,"tslzs":1,"mhorlacher":1,"geng-lee":1,"njaberi":1,"Suasnavas":1,"elisulvaran":1,"heylf":1,"b3b3gg":1,"asya69":1,"matthew-valentine":1,"yx-xu":1,"CDieterich":1,"ledwmp":1,"lee-van":1,"alexmondaini":1,"zhenzhenyang-psu":1,"charcuterie":1,"lmanchon":1,"jmcalabr":1,"ekfiagbedzi":1,"kopardev":1,"maheshmathe":1,"HUNNNGRY":1,"kerenzhou062":1,"IrisWEI-1996":1,"Li-Yupeng":1,"tianxiahuihui":1,"jkkbuddika":1,"ecwheele":1,"zhaoshuoxp":1,"jillhaney21":1,"TsviyaOlender":1,"YichaoOU":1,"dahun73":1,"akdess":1,"warif2":1,"tmosbruger":1,"arun-krishnaraj":1,"ramirobarrantes":1,"hwessels":1,"JuliaPhilipp":1},"pull_request_authors":{"alaindomissy":5,"algaebrown":2,"kstangline":1,"gpratt":1,"Jill-Moore":1,"y9c":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10110654,"issues_count":31581381,"pull_requests_count":98161992,"authors_count":10706190,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":3},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"elisulvaran":1,"jechia":1,"Suasnavas":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"gpratt","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gpratt"},{"login":"ecwheele","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ecwheele"},{"login":"byee4","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/byee4"},{"login":"shassathe","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/shassathe"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":2,"WatchEvent":6,"IssueCommentEvent":3,"ForkEvent":1},"last_year":{"IssuesEvent":2,"WatchEvent":6,"IssueCommentEvent":3,"ForkEvent":1}},"keywords":[],"dependencies":[],"score":12.013361301336166,"created_at":"2025-09-08T11:18:39.526Z","updated_at":"2025-10-07T08:25:01.689Z","avatar_url":"https://github.com/YeoLab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":97,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/65780","html_url":"https://science.ecosyste.ms/projects/65780"}