{"id":65795,"name":"AGHmatrix","description":"An R package to compute relationship matrices for diploid and autopolyploid species","url":"https://github.com/rramadeu/aghmatrix","last_synced_at":"2025-09-08T13:29:06.364Z","repository":{"id":47093519,"uuid":"70150596","full_name":"rramadeu/AGHmatrix","owner":"rramadeu","description":"An R package to compute relationship matrices for diploid and autopolyploid species","archived":false,"fork":true,"pushed_at":"2025-08-27T20:11:51.000Z","size":47452,"stargazers_count":11,"open_issues_count":0,"forks_count":3,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-31T19:41:02.000Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"prmunoz/AGHmatrix","license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rramadeu.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-10-06T12:11:21.000Z","updated_at":"2025-08-27T20:12:06.000Z","dependencies_parsed_at":null,"dependency_job_id":null,"html_url":"https://github.com/rramadeu/AGHmatrix","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/rramadeu/AGHmatrix","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rramadeu","download_url":"https://codeload.github.com/rramadeu/AGHmatrix/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274192636,"owners_count":25238634,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"rramadeu","name":"Rodrigo R Amadeu","uuid":"10066681","kind":"user","description":"Data-driven plant breeding","email":"","website":"http://rramadeu.github.io/about","location":"Chesterfield, MO","twitter":"rramadeu","company":"Bayer Crop Science","icon_url":"https://avatars.githubusercontent.com/u/10066681?u=63d288bb7093578d45e81b7d48a86a64f9339751\u0026v=4","repositories_count":5,"last_synced_at":"2023-07-08T02:30:12.225Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rramadeu","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-08T02:30:13.248Z","updated_at":"2023-07-08T02:30:13.248Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rramadeu","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rramadeu/repositories"},"packages":[{"id":429929,"name":"AGHmatrix","ecosystem":"cran","description":"Relationship Matrices for Diploid and Autopolyploid Species","homepage":"https://github.com/rramadeu/AGHmatrix","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/rramadeu/AGHmatrix","keywords_array":[],"namespace":null,"versions_count":10,"first_release_published_at":"2018-06-06T11:03:00.000Z","latest_release_published_at":"2023-10-03T00:00:00.000Z","latest_release_number":"2.1.4","last_synced_at":"2025-08-31T18:50:20.721Z","created_at":"2022-04-06T20:55:01.731Z","updated_at":"2025-08-31T20:11:47.035Z","registry_url":"https://cran.r-project.org/package=AGHmatrix","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/AGHmatrix/AGHmatrix.pdf","metadata":{},"repo_metadata":{"id":47093519,"uuid":"70150596","full_name":"rramadeu/AGHmatrix","owner":"rramadeu","description":"An R package to compute relationship matrices for diploid and autopolyploid species","archived":false,"fork":true,"pushed_at":"2024-11-07T22:35:08.000Z","size":6584,"stargazers_count":11,"open_issues_count":0,"forks_count":3,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-06-25T12:07:00.256Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"prmunoz/AGHmatrix","license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rramadeu.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-10-06T12:11:21.000Z","updated_at":"2024-11-07T22:35:06.000Z","dependencies_parsed_at":null,"dependency_job_id":null,"html_url":"https://github.com/rramadeu/AGHmatrix","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/rramadeu/AGHmatrix","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rramadeu","download_url":"https://codeload.github.com/rramadeu/AGHmatrix/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273032884,"owners_count":25034067,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-31T02:00:09.071Z","response_time":79,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"rramadeu","name":"Rodrigo R Amadeu","uuid":"10066681","kind":"user","description":"Data-driven plant breeding","email":"","website":"http://rramadeu.github.io/about","location":"Chesterfield, MO","twitter":"rramadeu","company":"Bayer Crop Science","icon_url":"https://avatars.githubusercontent.com/u/10066681?u=63d288bb7093578d45e81b7d48a86a64f9339751\u0026v=4","repositories_count":5,"last_synced_at":"2023-07-08T02:30:12.225Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rramadeu","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-08T02:30:13.248Z","updated_at":"2023-07-08T02:30:13.248Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rramadeu","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rramadeu/repositories"},"tags":[{"name":"v2.1.0","sha":"8d31714c7b8c56517f0fe11d71a521a4cae224a4","kind":"commit","published_at":"2023-03-30T20:54:27.000Z","download_url":"https://codeload.github.com/rramadeu/AGHmatrix/tar.gz/v2.1.0","html_url":"https://github.com/rramadeu/AGHmatrix/releases/tag/v2.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rramadeu/AGHmatrix@v2.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/tags/v2.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/tags/v2.1.0/manifests"},{"name":"v2.0.4","sha":"67759d4ed388a81df173b1dba16c515edbd454c7","kind":"commit","published_at":"2021-09-13T20:41:19.000Z","download_url":"https://codeload.github.com/rramadeu/AGHmatrix/tar.gz/v2.0.4","html_url":"https://github.com/rramadeu/AGHmatrix/releases/tag/v2.0.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rramadeu/AGHmatrix@v2.0.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/tags/v2.0.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/tags/v2.0.4/manifests"}]},"repo_metadata_updated_at":"2025-08-31T20:11:47.035Z","dependent_packages_count":2,"downloads":1485,"downloads_period":"last-month","dependent_repos_count":2,"rankings":{"downloads":12.42653606411398,"dependent_repos_count":19.265360641139804,"dependent_packages_count":13.676241371632154,"stargazers_count":17.38646482635797,"forks_count":14.210643509240702,"docker_downloads_count":0.578806767586821,"average":12.924008863345238},"purl":"pkg:cran/AGHmatrix","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/AGHmatrix","docker_dependents_count":1,"docker_downloads_count":21613,"usage_url":"https://repos.ecosyste.ms/usage/cran/AGHmatrix","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/AGHmatrix/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-06-25T15:56:23.404Z","issues_count":0,"pull_requests_count":16,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":1204179.1875,"issues_closed_count":0,"pull_requests_closed_count":16,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":8.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/issues","maintainers":[{"login":"rramadeu","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/rramadeu"}],"active_maintainers":[{"login":"rramadeu","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/rramadeu"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/AGHmatrix/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/AGHmatrix/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/AGHmatrix/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/AGHmatrix/related_packages","maintainers":[{"uuid":"rramadeu@gmail.com","login":null,"name":"Rodrigo Amadeu","email":"rramadeu@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-04-03T23:10:52.322Z","updated_at":"2023-04-03T23:10:52.322Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/rramadeu@gmail.com/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"id":722025,"full_name":"rramadeu/AGHmatrix","default_branch":"master","committers":[{"name":"Rodrigo Rampazo Amadeu","email":"rramadeu@gmail.com","login":null,"count":228},{"name":"prmunoz","email":"rra.gtn@gmail.com","login":null,"count":50},{"name":"Rodrigo Amadeu","email":"rodrigo.amadeu@bayer.com","login":null,"count":11}],"total_commits":289,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":96.33333333333333,"dds":0.2110726643598616,"past_year_committers":[{"name":"Rodrigo R Amadeu","email":"rramadeu@gmail.com","login":null,"count":25},{"name":"Rodrigo Amadeu","email":"rodrigo.amadeu@bayer.com","login":null,"count":11}],"past_year_total_commits":36,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":18.0,"past_year_dds":0.3055555555555556,"last_synced_at":"2023-10-25T13:42:47.274Z","last_synced_commit":"7d26eea46b75d0ed255f77f70a094c91dcac59cf","created_at":"2023-03-09T13:05:49.255Z","updated_at":"2023-10-25T13:42:47.275Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"rramadeu/AGHmatrix","html_url":"https://github.com/rramadeu/AGHmatrix","last_synced_at":"2025-08-31T19:41:26.360Z","status":"error","issues_count":0,"pull_requests_count":16,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":1204179.1875,"issues_closed_count":0,"pull_requests_closed_count":16,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":8.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"created_at":"2023-05-10T22:32:15.486Z","updated_at":"2025-09-02T17:35:16.671Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rramadeu%2FAGHmatrix/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"OWNER":18,"NONE":1},"issue_authors":{},"pull_request_authors":{"rramadeu":18,"Prof-ThiagoOliveira":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10042729,"issues_count":30645220,"pull_requests_count":91402388,"authors_count":10443886,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"OWNER":4,"NONE":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"rramadeu":4,"Prof-ThiagoOliveira":1},"maintainers":[{"login":"rramadeu","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/rramadeu"}],"active_maintainers":[{"login":"rramadeu","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/rramadeu"}]},"events":{"total":{"DeleteEvent":1,"IssueCommentEvent":3,"PushEvent":1,"PullRequestEvent":4,"ForkEvent":1,"CreateEvent":1},"last_year":{"DeleteEvent":1,"IssueCommentEvent":3,"PushEvent":1,"PullRequestEvent":4,"ForkEvent":1,"CreateEvent":1}},"keywords":[],"dependencies":[],"score":13.544268603159033,"created_at":"2025-09-08T11:18:39.627Z","updated_at":"2025-10-07T08:25:01.921Z","avatar_url":"https://github.com/rramadeu.png","language":"R","category":null,"sub_category":null,"monthly_downloads":1485,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/bioinformatics/btad445","https://doi.org/10.3835/plantgenome2016.01.0009","https://doi.org/0.1007/s00122-015-2607-9","https://doi.org/10.1534/genetics.118.300685","https://doi.org/10.1007/s00122-017-3041-y","https://doi.org/10.2307/2529339","https://doi.org/10.1007/s00122-012-1785-y","https://doi.org/10.1186/s12711-018-0386-x","https://doi.org/10.1534/genetics.114.171322","https://doi.org/10.1534/genetics.111.137026","https://doi.org/10.1007/s00122-013-2258-7","https://doi.org/10.3835/plantgenome2016.02.0021","https://doi.org/10.1371/journal.pone.0045293","https://doi.org/10.3168/jds.2007-0980","https://doi.org/10.1534/genetics.113.155176","https://doi.org/10.1038/ng.608"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/65795","html_url":"https://science.ecosyste.ms/projects/65795"}