{"id":66273,"name":"deepredeff","description":"predict effector protein","url":"https://github.com/ruthkr/deepredeff","last_synced_at":"2025-09-08T13:36:35.865Z","repository":{"id":56934763,"uuid":"255445233","full_name":"ruthkr/deepredeff","owner":"ruthkr","description":"predict effector protein","archived":false,"fork":false,"pushed_at":"2023-09-14T22:41:56.000Z","size":1645,"stargazers_count":5,"open_issues_count":1,"forks_count":4,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-08-18T13:11:23.682Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://ruthkr.github.io/deepredeff","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ruthkr.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2020-04-13T21:27:16.000Z","updated_at":"2025-07-03T10:17:36.000Z","dependencies_parsed_at":"2022-08-21T00:40:33.375Z","dependency_job_id":"8d8a72cd-2c8b-4277-aae4-f1897a3056ef","html_url":"https://github.com/ruthkr/deepredeff","commit_stats":{"total_commits":360,"total_committers":1,"mean_commits":360.0,"dds":0.0,"last_synced_commit":"58468786da8c9cbf45ad28433b477d8aa2973139"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/ruthkr/deepredeff","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruthkr","download_url":"https://codeload.github.com/ruthkr/deepredeff/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274194761,"owners_count":25239107,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ruthkr","name":"Ruth Kristianingsih","uuid":"38610118","kind":"user","description":"","email":"","website":"ruthkr.com","location":"Norwich, UK","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/38610118?u=d666ca11a29cc48c51694b37c94b26e63872d085\u0026v=4","repositories_count":4,"last_synced_at":"2023-03-10T07:37:45.683Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ruthkr","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-20T04:07:01.334Z","updated_at":"2023-03-10T07:37:45.697Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruthkr","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruthkr/repositories"},"packages":[{"id":430714,"name":"deepredeff","ecosystem":"cran","description":"Deep Learning Prediction of Effectors","homepage":"https://github.com/ruthkr/deepredeff/","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/ruthkr/deepredeff","keywords_array":[],"namespace":null,"versions_count":2,"first_release_published_at":"2020-10-23T12:30:00.000Z","latest_release_published_at":"2021-07-16T00:00:00.000Z","latest_release_number":"0.1.1","last_synced_at":"2025-08-18T12:49:18.687Z","created_at":"2022-04-06T21:16:22.436Z","updated_at":"2025-08-18T13:23:12.275Z","registry_url":"https://cran.r-project.org/package=deepredeff","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/deepredeff/deepredeff.pdf","metadata":{},"repo_metadata":{"id":56934763,"uuid":"255445233","full_name":"ruthkr/deepredeff","owner":"ruthkr","description":"predict effector protein","archived":false,"fork":false,"pushed_at":"2023-09-14T22:41:56.000Z","size":1645,"stargazers_count":4,"open_issues_count":1,"forks_count":4,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-07-03T03:41:59.936Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://ruthkr.github.io/deepredeff","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ruthkr.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2020-04-13T21:27:16.000Z","updated_at":"2025-02-23T15:34:20.000Z","dependencies_parsed_at":"2022-08-21T00:40:33.375Z","dependency_job_id":"8d8a72cd-2c8b-4277-aae4-f1897a3056ef","html_url":"https://github.com/ruthkr/deepredeff","commit_stats":{"total_commits":360,"total_committers":1,"mean_commits":360.0,"dds":0.0,"last_synced_commit":"58468786da8c9cbf45ad28433b477d8aa2973139"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/ruthkr/deepredeff","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruthkr","download_url":"https://codeload.github.com/ruthkr/deepredeff/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270996994,"owners_count":24681955,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-18T02:00:08.743Z","response_time":89,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"ruthkr","name":"Ruth Kristianingsih","uuid":"38610118","kind":"user","description":"","email":"","website":"ruthkr.com","location":"Norwich, UK","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/38610118?u=d666ca11a29cc48c51694b37c94b26e63872d085\u0026v=4","repositories_count":4,"last_synced_at":"2023-03-10T07:37:45.683Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ruthkr","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-20T04:07:01.334Z","updated_at":"2023-03-10T07:37:45.697Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruthkr","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruthkr/repositories"},"tags":[{"name":"v0.1.1","sha":"1f2ecbbb7afc60e39240c07e5471703f0e4e548d","kind":"commit","published_at":"2021-07-15T09:15:02.000Z","download_url":"https://codeload.github.com/ruthkr/deepredeff/tar.gz/v0.1.1","html_url":"https://github.com/ruthkr/deepredeff/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ruthkr/deepredeff@v0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/tags/v0.1.1/manifests"},{"name":"v0.1.0","sha":"67957210a21c17dd103dabbc19db9eefabe13720","kind":"commit","published_at":"2020-07-08T10:55:29.000Z","download_url":"https://codeload.github.com/ruthkr/deepredeff/tar.gz/v0.1.0","html_url":"https://github.com/ruthkr/deepredeff/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ruthkr/deepredeff@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2025-08-18T13:23:12.275Z","dependent_packages_count":0,"downloads":301,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":64.03828839501493,"dependent_repos_count":35.45467469080226,"dependent_packages_count":29.796711368051938,"stargazers_count":28.503056437473344,"forks_count":14.855707719281618,"average":34.52968772212482},"purl":"pkg:cran/deepredeff","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/deepredeff","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/deepredeff","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/deepredeff/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-18T13:08:28.875Z","issues_count":4,"pull_requests_count":1,"avg_time_to_close_issue":957265.3333333334,"avg_time_to_close_pull_request":30268022.0,"issues_closed_count":3,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":2.5,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/deepredeff/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/deepredeff/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/deepredeff/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/deepredeff/related_packages","maintainers":[{"uuid":"ruth.kristianingsih30@gmail.com","login":null,"name":"Ruth Kristianingsih","email":"ruth.kristianingsih30@gmail.com","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2022-11-14T17:18:32.339Z","updated_at":"2022-11-14T17:18:32.339Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/ruth.kristianingsih30@gmail.com/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"id":722348,"full_name":"ruthkr/deepredeff","default_branch":"master","committers":[{"name":"Ruth Kristianingsih","email":"ruth.kristianingsih30@gmail.com","login":null,"count":368},{"name":"clarajegousse","email":"clara.jegousse@gmail.com","login":null,"count":1}],"total_commits":369,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":184.5,"dds":0.0027100271002710175,"past_year_committers":[{"name":"Ruth Kristianingsih","email":"ruth.kristianingsih30@gmail.com","login":null,"count":8}],"past_year_total_commits":8,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":8.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:43:38.439Z","last_synced_commit":"2515b42ba65c64cad0fe055469ee65b25438a32c","created_at":"2023-03-09T13:06:26.478Z","updated_at":"2023-10-25T13:43:38.440Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:13.651Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"ruthkr/deepredeff","html_url":"https://github.com/ruthkr/deepredeff","last_synced_at":"2025-08-18T13:08:28.875Z","status":"error","issues_count":4,"pull_requests_count":1,"avg_time_to_close_issue":957265.3333333334,"avg_time_to_close_pull_request":30268022.0,"issues_closed_count":3,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":2.5,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-10T22:34:54.620Z","updated_at":"2025-08-18T13:08:28.876Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruthkr%2Fdeepredeff/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":4},"pull_request_author_associations_count":{"CONTRIBUTOR":1},"issue_authors":{"bsalehe":2,"metalichen":1,"emilecg":1},"pull_request_authors":{"clarajegousse":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10121734,"issues_count":31720469,"pull_requests_count":98807340,"authors_count":10710963,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-21T00:40:33.271Z","updated_at":"2022-08-21T00:40:33.271Z","repository_link":"https://github.com/ruthkr/deepredeff/blob/master/DESCRIPTION","dependencies":[{"id":2197994315,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 2.10","direct":true,"kind":"depends","optional":false},{"id":2197994316,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994317,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994318,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994319,"package_name":"ggthemes","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994320,"package_name":"keras","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994321,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994322,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994323,"package_name":"reticulate","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994324,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994325,"package_name":"seqinr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994326,"package_name":"tensorflow","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2197994327,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2197994328,"package_name":"kableExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2197994329,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2197994330,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2197994331,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2197994332,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":8.19533366716287,"created_at":"2025-09-08T11:18:41.785Z","updated_at":"2025-10-07T08:25:08.124Z","avatar_url":"https://github.com/ruthkr.png","language":"R","category":null,"sub_category":null,"monthly_downloads":301,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/66273","html_url":"https://science.ecosyste.ms/projects/66273"}