{"id":66423,"name":"rnaagecalc","description":"A multi-tissue transcriptional age calculator","url":"https://github.com/reese3928/rnaagecalc","last_synced_at":"2025-09-08T13:39:03.174Z","repository":{"id":98051121,"uuid":"240347487","full_name":"reese3928/RNAAgeCalc","owner":"reese3928","description":"A multi-tissue transcriptional age calculator","archived":false,"fork":false,"pushed_at":"2020-09-20T15:29:11.000Z","size":5770,"stargazers_count":8,"open_issues_count":3,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-08-29T01:42:47.682Z","etag":null,"topics":["biological-age","elastic-net","gene-expression","genotype-tissue-expression","prediction","regularized-regression","rna-seq"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/release/bioc/html/RNAAgeCalc.html","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/reese3928.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2020-02-13T19:50:00.000Z","updated_at":"2025-01-08T08:43:20.000Z","dependencies_parsed_at":"2023-03-12T19:00:16.787Z","dependency_job_id":null,"html_url":"https://github.com/reese3928/RNAAgeCalc","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/reese3928/RNAAgeCalc","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2FRNAAgeCalc","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2FRNAAgeCalc/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2FRNAAgeCalc/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2FRNAAgeCalc/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/reese3928","download_url":"https://codeload.github.com/reese3928/RNAAgeCalc/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2FRNAAgeCalc/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274194979,"owners_count":25239146,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"reese3928","name":"Xu Ren","uuid":"13157014","kind":"user","description":"Staying at home.","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/13157014?v=4","repositories_count":3,"last_synced_at":"2023-03-02T17:35:20.987Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/reese3928","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T08:39:13.784Z","updated_at":"2023-03-02T17:35:20.996Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/reese3928","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/reese3928/repositories"},"packages":null,"commits":{"id":1403115,"full_name":"reese3928/RNAAgeCalc","default_branch":"master","committers":[{"name":"Xu Ren","email":"xu.ren@stonybrook.edu","login":null,"count":6},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":2},{"name":"Xu Ren","email":"xuren2120@email.com","login":null,"count":1}],"total_commits":9,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":3.0,"dds":0.33333333333333337,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2024-01-25T23:39:54.871Z","last_synced_commit":"af9a628f66b5d5d7a2c860b1837d99b43ab41066","created_at":"2023-10-25T13:05:26.451Z","updated_at":"2024-01-25T23:39:54.873Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2FRNAAgeCalc/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"reese3928/rnaagecalc","html_url":"https://github.com/reese3928/rnaagecalc","last_synced_at":"2025-08-28T21:40:46.630Z","status":"error","issues_count":3,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":3,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-11-16T00:10:22.182Z","updated_at":"2025-09-01T12:48:22.506Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2Frnaagecalc","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/reese3928%2Frnaagecalc/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":3},"pull_request_author_associations_count":{},"issue_authors":{"tu12dou":1,"Dokmen":1,"yajass":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":9980396,"issues_count":29825944,"pull_requests_count":87225962,"authors_count":9826726,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":2},"last_year":{"WatchEvent":2}},"keywords":["biological-age","elastic-net","gene-expression","genotype-tissue-expression","prediction","regularized-regression","rna-seq"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-03-12T19:00:16.510Z","updated_at":"2023-03-12T19:00:16.510Z","repository_link":"https://github.com/reese3928/RNAAgeCalc/blob/master/DESCRIPTION","dependencies":[{"id":8216178456,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.6","direct":true,"kind":"depends","optional":false},{"id":8216178458,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178459,"package_name":"recount","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178460,"package_name":"impute","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178464,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178547,"package_name":"org.Hs.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178549,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178550,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178551,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":8216178552,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":8216178553,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":8216178554,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":3.4965075614664807,"created_at":"2025-09-08T11:18:42.467Z","updated_at":"2025-10-07T08:25:10.145Z","avatar_url":"https://github.com/reese3928.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1371/journal.pone.0237006"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/66423","html_url":"https://science.ecosyste.ms/projects/66423"}