{"id":66431,"name":"BgeeDB","description":"Source code of the R packge BgeeDB to use data from the Bgee database","url":"https://github.com/bgeedb/bgeedb_r","last_synced_at":"2025-09-08T13:39:35.867Z","repository":{"id":43669835,"uuid":"56141490","full_name":"BgeeDB/BgeeDB_R","owner":"BgeeDB","description":"Source code of the R packge BgeeDB to use data from the Bgee database","archived":false,"fork":false,"pushed_at":"2025-02-03T14:00:45.000Z","size":590,"stargazers_count":16,"open_issues_count":19,"forks_count":6,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-08-29T01:28:45.444Z","etag":null,"topics":["bioinformatics","enrichment-analysis","rna-seq","scrna-seq","single-cell"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/BgeeDB/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BgeeDB.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-04-13T10:09:30.000Z","updated_at":"2025-04-09T10:11:02.000Z","dependencies_parsed_at":"2024-09-17T14:38:11.800Z","dependency_job_id":"eee5c94f-ffce-4e1a-95f2-10a8fd3cc753","html_url":"https://github.com/BgeeDB/BgeeDB_R","commit_stats":{"total_commits":422,"total_committers":23,"mean_commits":"18.347826086956523","dds":0.7488151658767772,"last_synced_commit":"fa0dca60258676ab57f492266f0b9d2f12c061bd"},"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/BgeeDB/BgeeDB_R","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BgeeDB","download_url":"https://codeload.github.com/BgeeDB/BgeeDB_R/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274194979,"owners_count":25239146,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"BgeeDB","name":"BgeeDB","uuid":"9800628","kind":"organization","description":"","email":null,"website":"https://bgee.org/","location":null,"twitter":"Bgeedb","company":null,"icon_url":"https://avatars.githubusercontent.com/u/9800628?v=4","repositories_count":10,"last_synced_at":"2023-02-27T00:00:34.061Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BgeeDB","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-10T08:55:07.976Z","updated_at":"2023-02-27T00:00:34.066Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BgeeDB","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BgeeDB/repositories"},"packages":[{"id":8418825,"name":"BgeeDB","ecosystem":"bioconductor","description":"Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology","homepage":"https://github.com/BgeeDB/BgeeDB_R ","licenses":"GPL-3 + file LICENSE","normalized_licenses":["AML"],"repository_url":"https://github.com/BgeeDB/BgeeDB_R","keywords_array":["DataImport","GO","GeneExpression","GeneSetEnrichment","Microarray","Sequencing","Software"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T14:20:51.317Z","latest_release_published_at":"2025-05-27T03:49:08.924Z","latest_release_number":"2.34.0","last_synced_at":"2025-08-28T21:00:38.324Z","created_at":"2023-10-12T14:20:51.052Z","updated_at":"2025-08-28T21:10:48.648Z","registry_url":"https://bioconductor.org/packages/BgeeDB","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/BgeeDB/inst/doc/BgeeDB.pdf","metadata":{},"repo_metadata":{"id":43669835,"uuid":"56141490","full_name":"BgeeDB/BgeeDB_R","owner":"BgeeDB","description":"Source code of the R packge BgeeDB to use data from the Bgee database","archived":false,"fork":false,"pushed_at":"2025-02-03T14:00:45.000Z","size":590,"stargazers_count":16,"open_issues_count":19,"forks_count":6,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-07-28T19:02:46.830Z","etag":null,"topics":["bioinformatics","enrichment-analysis","rna-seq","scrna-seq","single-cell"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/BgeeDB/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BgeeDB.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-04-13T10:09:30.000Z","updated_at":"2025-04-09T10:11:02.000Z","dependencies_parsed_at":"2024-09-17T14:38:11.800Z","dependency_job_id":"eee5c94f-ffce-4e1a-95f2-10a8fd3cc753","html_url":"https://github.com/BgeeDB/BgeeDB_R","commit_stats":{"total_commits":422,"total_committers":23,"mean_commits":"18.347826086956523","dds":0.7488151658767772,"last_synced_commit":"fa0dca60258676ab57f492266f0b9d2f12c061bd"},"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/BgeeDB/BgeeDB_R","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BgeeDB","download_url":"https://codeload.github.com/BgeeDB/BgeeDB_R/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272557255,"owners_count":24955149,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-28T02:00:10.768Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"BgeeDB","name":"BgeeDB","uuid":"9800628","kind":"organization","description":"","email":null,"website":"https://bgee.org/","location":null,"twitter":"Bgeedb","company":null,"icon_url":"https://avatars.githubusercontent.com/u/9800628?v=4","repositories_count":10,"last_synced_at":"2023-02-27T00:00:34.061Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BgeeDB","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-10T08:55:07.976Z","updated_at":"2023-02-27T00:00:34.066Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BgeeDB","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BgeeDB/repositories"},"tags":[{"name":"2.13.1","sha":"84b58c1de68fadc705856ad6ad1ac1e7858bfd4e","kind":"tag","published_at":"2020-04-15T13:48:06.000Z","download_url":"https://codeload.github.com/BgeeDB/BgeeDB_R/tar.gz/2.13.1","html_url":"https://github.com/BgeeDB/BgeeDB_R/releases/tag/2.13.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BgeeDB/BgeeDB_R@2.13.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags/2.13.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags/2.13.1/manifests"},{"name":"2.6.2","sha":"2d1498b6d5a0bd38603a3b09c542bcfb08f917ae","kind":"tag","published_at":"2018-06-18T16:19:42.000Z","download_url":"https://codeload.github.com/BgeeDB/BgeeDB_R/tar.gz/2.6.2","html_url":"https://github.com/BgeeDB/BgeeDB_R/releases/tag/2.6.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BgeeDB/BgeeDB_R@2.6.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags/2.6.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags/2.6.2/manifests"},{"name":"2.0.0","sha":"c0e2dec3d8b8f35ec5f0fe1531a79524899e3aa0","kind":"commit","published_at":"2016-10-29T11:06:16.000Z","download_url":"https://codeload.github.com/BgeeDB/BgeeDB_R/tar.gz/2.0.0","html_url":"https://github.com/BgeeDB/BgeeDB_R/releases/tag/2.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BgeeDB/BgeeDB_R@2.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags/2.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/tags/2.0.0/manifests"}]},"repo_metadata_updated_at":"2025-08-28T21:10:48.648Z","dependent_packages_count":2,"downloads":24716,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":45.97701149425287,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":8.045977011494253,"forks_count":9.961685823754788,"docker_downloads_count":null,"average":12.796934865900383},"purl":"pkg:bioconductor/BgeeDB","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/BgeeDB","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/BgeeDB","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/BgeeDB/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-28T19:08:20.298Z","issues_count":29,"pull_requests_count":1,"avg_time_to_close_issue":16283335.181818182,"avg_time_to_close_pull_request":null,"issues_closed_count":11,"pull_requests_closed_count":0,"pull_request_authors_count":1,"issue_authors_count":9,"avg_comments_per_issue":1.896551724137931,"avg_comments_per_pull_request":5.0,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":59961.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":5.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/issues","maintainers":[{"login":"jwollbrett","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jwollbrett"},{"login":"fbastian","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/fbastian"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BgeeDB/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BgeeDB/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BgeeDB/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BgeeDB/related_packages","maintainers":[{"uuid":"julien.wollbrett@unil.ch","login":null,"name":"Julien Wollbrett","email":"julien.wollbrett@unil.ch","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-10-12T14:22:51.759Z","updated_at":"2023-10-12T14:22:51.759Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/julien.wollbrett@unil.ch/packages"},{"uuid":"julien.roux@unibas.ch","login":null,"name":"Julien Roux","email":"julien.roux@unibas.ch","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-10-12T14:22:51.804Z","updated_at":"2023-10-12T14:22:51.804Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/julien.roux@unibas.ch/packages"},{"uuid":"andreakomljenovic@gmail.com","login":null,"name":"Andrea Komljenovic","email":"andreakomljenovic@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-10-12T14:22:51.844Z","updated_at":"2023-10-12T14:22:51.844Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/andreakomljenovic@gmail.com/packages"},{"uuid":"bgee@sib.swiss","login":null,"name":"Frederic Bastian","email":"bgee@sib.swiss","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-07T17:51:09.836Z","updated_at":"2023-11-07T17:51:09.836Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/bgee@sib.swiss/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402742,"full_name":"BgeeDB/BgeeDB_R","default_branch":"master","committers":[{"name":"Julien Roux","email":"julien.roux@unil.ch","login":null,"count":106},{"name":"Julien","email":"julien.wollbrett@gmail.com","login":null,"count":84},{"name":"wirawara","email":"wirawara","login":"wirawara","count":77},{"name":"wirawara","email":"andrea.komljenovic@sib.swiss","login":null,"count":33},{"name":"Julien Wollbrett","email":"jwollbrett@bio-51-170.unil.ch","login":null,"count":30},{"name":"Andrea Komljenovic","email":"andreakomljenovic@gmail.com","login":null,"count":29},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":13},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":7},{"name":"Frédéric Bastian","email":"bgee@sib.swiss","login":null,"count":7},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":null,"count":6},{"name":"jwollbrett","email":"julien.wollbrett@unil.ch","login":null,"count":4},{"name":"julien.roux@unibas.ch","email":"julien.roux@unibas.ch","login":null,"count":4},{"name":"smoretti","email":"smoretti","login":"smoretti","count":3},{"name":"fbastian","email":"fbastian","login":"fbastian","count":3},{"name":"SFonsecaCosta","email":"sara.fonsecacosta@unil.ch","login":null,"count":2},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":2},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"Rouxj","email":"rouxj@df203-228.dfusb.unibas.ch","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"fbastian","email":"frederic.bastian@gmail.com","login":null,"count":2},{"name":"LiNk-NY","email":"marcel.ramosperez@roswellpark.org","login":null,"count":1},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":null,"count":1}],"total_commits":422,"total_committers":23,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":18.347826086956523,"dds":0.7488151658767772,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:03:08.173Z","last_synced_commit":"fa0dca60258676ab57f492266f0b9d2f12c061bd","created_at":"2023-10-25T13:02:50.524Z","updated_at":"2023-10-25T13:03:08.175Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"BgeeDB/BgeeDB_R","html_url":"https://github.com/BgeeDB/BgeeDB_R","last_synced_at":"2025-08-28T21:13:48.928Z","status":"error","issues_count":29,"pull_requests_count":1,"avg_time_to_close_issue":16283335.181818182,"avg_time_to_close_pull_request":null,"issues_closed_count":11,"pull_requests_closed_count":0,"pull_request_authors_count":1,"issue_authors_count":9,"avg_comments_per_issue":1.896551724137931,"avg_comments_per_pull_request":5.0,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":59961.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":5.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-21T01:02:29.644Z","updated_at":"2025-09-02T09:11:53.172Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BgeeDB%2FBgeeDB_R/issues","issue_labels_count":{"enhancement":9,"low priority":9,"high priority":5,"bug":3},"pull_request_labels_count":{},"issue_author_associations_count":{"CONTRIBUTOR":15,"NONE":10,"COLLABORATOR":3,"MEMBER":1},"pull_request_author_associations_count":{"NONE":2},"issue_authors":{"julien-roux":15,"Ni-Ar":3,"jwollbrett":3,"dhimmel":2,"HenrikCordes":2,"anishahaldar":1,"marcrr":1,"shubihu":1,"fbastian":1},"pull_request_authors":{"garethgillard":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10166699,"issues_count":32013288,"pull_requests_count":100268859,"authors_count":10729412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"Ni-Ar":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"jwollbrett","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jwollbrett"},{"login":"fbastian","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/fbastian"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"PushEvent":9,"CreateEvent":1},"last_year":{"WatchEvent":1,"PushEvent":9,"CreateEvent":1}},"keywords":["bioinformatics","enrichment-analysis","rna-seq","scrna-seq","single-cell"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-21T08:40:26.550Z","updated_at":"2022-09-21T08:40:26.550Z","repository_link":"https://github.com/BgeeDB/BgeeDB_R/blob/master/DESCRIPTION","dependencies":[{"id":5711648126,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.6.0","direct":true,"kind":"depends","optional":false},{"id":5711648127,"package_name":"topGO","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5711648128,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5711648129,"package_name":"R.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648130,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648131,"package_name":"curl","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648132,"package_name":"RCurl","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648133,"package_name":"digest","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648134,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648135,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648136,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648137,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648138,"package_name":"RSQLite","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648139,"package_name":"graph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648140,"package_name":"Biobase","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5711648141,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5711648142,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5711648143,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5711648144,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5711648145,"package_name":"markdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":16.80629109186633,"created_at":"2025-09-08T11:18:42.505Z","updated_at":"2025-10-07T08:25:10.262Z","avatar_url":"https://github.com/BgeeDB.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.12688/f1000research.9973.2","https://doi.org/10.5281/zenodo.163768"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","genomics","gene","transcriptomics","bioconductor","u24ca289073","core-package","core-services","tcga","mutations"],"project_url":"https://science.ecosyste.ms/api/v1/projects/66431","html_url":"https://science.ecosyste.ms/projects/66431"}