{"id":66481,"name":"cellbench","description":"R package for benchmarking single cell analysis methods","url":"https://github.com/shians/cellbench","last_synced_at":"2025-09-08T13:40:07.354Z","repository":{"id":62343044,"uuid":"153367647","full_name":"Shians/CellBench","owner":"Shians","description":"R package for benchmarking single cell analysis methods","archived":false,"fork":false,"pushed_at":"2023-10-04T05:14:02.000Z","size":4183,"stargazers_count":32,"open_issues_count":8,"forks_count":6,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-08-09T01:52:04.730Z","etag":null,"topics":["benchmark","bioinformatics","r"],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Shians.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-10-16T23:30:18.000Z","updated_at":"2025-07-28T13:28:04.000Z","dependencies_parsed_at":"2023-01-20T23:04:02.833Z","dependency_job_id":"aec5d96e-79e5-4e58-b9ca-7473137a1f03","html_url":"https://github.com/Shians/CellBench","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/Shians/CellBench","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Shians%2FCellBench","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Shians%2FCellBench/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Shians%2FCellBench/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Shians%2FCellBench/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Shians","download_url":"https://codeload.github.com/Shians/CellBench/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Shians%2FCellBench/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274195009,"owners_count":25239146,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Shians","name":"Shian Su","uuid":"6036662","kind":"user","description":"Bioinformatician, biostatistician and biological lifeform. Interested in R, C++ and Javascript for genomic data processing, summarisation and visualisation.","email":"","website":null,"location":"Melbourne, Australia","twitter":null,"company":"Walter and Eliza Hall @WEHI_research","icon_url":"https://avatars.githubusercontent.com/u/6036662?u=012f717290bfcd4729f463d1d6207f54d843e16f\u0026v=4","repositories_count":120,"last_synced_at":"2023-08-07T08:32:48.628Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Shians","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T18:54:45.459Z","updated_at":"2023-08-07T08:32:48.737Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Shians","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Shians/repositories"},"packages":null,"commits":{"id":1402818,"full_name":"shians/cellbench","default_branch":"devel","committers":[{"name":"Shians","email":"registertonysu@gmail.com","login":null,"count":326},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":14},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"Hervé Pagès","email":"hpages.on.github@gmail.com","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"Peter Hickey","email":"peter.hickey@gmail.com","login":null,"count":1},{"name":"QGouil","email":"kent1gouil@gmail.com","login":null,"count":1}],"total_commits":348,"total_committers":7,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":49.714285714285715,"dds":0.06321839080459768,"past_year_committers":[{"name":"Shians","email":"registertonysu@gmail.com","login":null,"count":25},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2}],"past_year_total_commits":29,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":9.666666666666666,"past_year_dds":0.13793103448275867,"last_synced_at":"2023-10-25T13:03:23.149Z","last_synced_commit":"d8ca3c64022715719f472403ae6f99a3964ecd67","created_at":"2023-10-25T13:03:17.371Z","updated_at":"2023-10-25T13:03:23.149Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/shians%2Fcellbench/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"shians/cellbench","html_url":"https://github.com/shians/cellbench","last_synced_at":"2025-08-10T05:13:23.496Z","status":"error","issues_count":10,"pull_requests_count":3,"avg_time_to_close_issue":1965037.0,"avg_time_to_close_pull_request":853362.6666666666,"issues_closed_count":2,"pull_requests_closed_count":3,"pull_request_authors_count":2,"issue_authors_count":3,"avg_comments_per_issue":0.3,"avg_comments_per_pull_request":0.6666666666666666,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-05-27T00:09:12.594Z","updated_at":"2025-08-10T05:13:23.497Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/shians%2Fcellbench","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/shians%2Fcellbench/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":8,"NONE":1,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":3},"issue_authors":{"Shians":8,"lovivi":1,"PeteHaitch":1},"pull_request_authors":{"QGouil":2,"PeteHaitch":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10130202,"issues_count":31812329,"pull_requests_count":99213118,"authors_count":10714141,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"Shians","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Shians"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":3},"last_year":{"WatchEvent":3}},"keywords":["benchmark","bioinformatics","r"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-10-31T04:45:39.263Z","updated_at":"2022-10-31T04:45:39.263Z","repository_link":"https://github.com/Shians/CellBench/blob/devel/DESCRIPTION","dependencies":[{"id":6560280398,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.6","direct":true,"kind":"depends","optional":false},{"id":6560280399,"package_name":"SingleCellExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":6560280400,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":6560280401,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":6560280402,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":6560280403,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":6560280404,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":6560280405,"package_name":"BiocFileCache","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280406,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280407,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280408,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280409,"package_name":"glue","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280410,"package_name":"memoise","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280411,"package_name":"purrr","ecosystem":"cran","requirements":"\u003e= 0.3.0","direct":true,"kind":"imports","optional":false},{"id":6560280412,"package_name":"rappdirs","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280413,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280414,"package_name":"tidyselect","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280415,"package_name":"lubridate","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6560280416,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6560280417,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6560280418,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6560280419,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6560280420,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6560280421,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6560280422,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":5.634789603169249,"created_at":"2025-09-08T11:18:42.706Z","updated_at":"2025-10-07T08:25:10.881Z","avatar_url":"https://github.com/Shians.png","language":"HTML","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","immune-repertoire","gene","human-cell-atlas","single-cell-rna-seq","bioconductor","u24ca289073","grna-sequence","transcriptomics","proteomics"],"project_url":"https://science.ecosyste.ms/api/v1/projects/66481","html_url":"https://science.ecosyste.ms/projects/66481"}