{"id":66621,"name":"cdkr","description":"Integrating R and the CDK","url":"https://github.com/CDK-R/cdkr","last_synced_at":"2025-09-08T13:42:05.671Z","repository":{"id":891134,"uuid":"641377","full_name":"CDK-R/cdkr","owner":"CDK-R","description":"Integrating R and the CDK","archived":false,"fork":false,"pushed_at":"2024-03-04T02:00:51.000Z","size":312065,"stargazers_count":42,"open_issues_count":23,"forks_count":28,"subscribers_count":14,"default_branch":"master","last_synced_at":"2024-03-25T23:12:33.677Z","etag":null,"topics":["java","rcdk"],"latest_commit_sha":null,"homepage":"https://cdk-r.github.io/cdkr/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"thiagopradi/octopus","license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CDK-R.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2010-05-01T13:59:57.000Z","updated_at":"2023-03-31T06:42:14.000Z","dependencies_parsed_at":"2024-03-03T15:49:34.795Z","dependency_job_id":null,"html_url":"https://github.com/CDK-R/cdkr","commit_stats":{"total_commits":588,"total_committers":23,"mean_commits":"25.565217391304348","dds":"0.36904761904761907","last_synced_commit":"400d40053194cca6c5b95f9faacd6ebd1b3e7d81"},"previous_names":["rajarshi/cdkr"],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/CDK-R/cdkr","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CDK-R","download_url":"https://codeload.github.com/CDK-R/cdkr/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274195172,"owners_count":25239146,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"CDK-R","name":"CDK-R: CDK Integration with R","uuid":"44929100","kind":"organization","description":"R packages and code that makes the CDK available within R and applications built on top of this integration","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/44929100?v=4","repositories_count":7,"last_synced_at":"2024-03-25T23:12:32.879Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/CDK-R","funding_links":[],"total_stars":54,"followers":1,"following":0,"created_at":"2022-11-02T20:50:31.401Z","updated_at":"2024-03-25T23:12:33.079Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CDK-R","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CDK-R/repositories"},"packages":[],"commits":{"id":1404540,"full_name":"CDK-R/cdkr","default_branch":"master","committers":[{"name":"Rajarshi Guha","email":"rajarshi.guha@gmail.com","login":null,"count":371},{"name":"zach charlop-powers","email":"zach.charlop.powers@gmail.com","login":null,"count":108},{"name":"Rajarshi Guha","email":"rajarshi_guha@vrtx.com","login":null,"count":27},{"name":"Eric Bach","email":"eric.bach@aalto.fi","login":null,"count":19},{"name":"Steffen Neumann","email":"sneumann@ipb-halle.de","login":null,"count":12},{"name":"zachcp","email":"zachcp","login":"zachcp","count":10},{"name":"Zachary Charlop-Powers","email":"zcharlop-powers@zymergen.com","login":null,"count":8},{"name":"Zach Charlop-Powers","email":"zachcp@Tungsten.lan","login":null,"count":5},{"name":"Abhik Seal","email":"abhik1368@gmail.com","login":null,"count":4},{"name":"schymane","email":"emma.schymanski@eawag.ch","login":null,"count":3},{"name":"robert allaway","email":"robert.j.allaway@gmail.com","login":null,"count":3},{"name":"Zach Charlop-Powers","email":"zachcp@Tungsten.local","login":null,"count":3},{"name":"Adelene Lai","email":"adelenelai@gmail.com","login":null,"count":3},{"name":"John Buonagurio","email":"jbuonagurio@exponent.com","login":"jbuonagurio","count":3},{"name":"Rajarshi Guha","email":"guha@usmac02d30ljmd6wm.bos1.vrtx.com","login":null,"count":1},{"name":"guhar","email":"guhar@hawaii.nhgri.nih.gov","login":null,"count":1},{"name":"Guha","email":"guhar@hg-01781574-lw7.nhgri.nih.gov","login":null,"count":1},{"name":"schymane","email":"emma.schymanski@uni.lu","login":null,"count":1},{"name":"Mohammed Ali","email":"moh_fcis@yahoo.com","login":null,"count":1},{"name":"Egon Willighagen","email":"egon.willighagen@gmail.com","login":null,"count":1},{"name":"jotsetung","email":"johannes.rainer@gmail.com","login":null,"count":1},{"name":"Paul Boardman","email":"paulboardman@gmail.com","login":null,"count":1},{"name":"rickhelmus","email":"37015911+rickhelmus","login":"rickhelmus","count":1}],"total_commits":588,"total_committers":23,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":25.565217391304348,"dds":0.36904761904761907,"past_year_committers":[{"name":"zachcp","email":"zachcp","login":"zachcp","count":4},{"name":"rickhelmus","email":"37015911+rickhelmus","login":"rickhelmus","count":1},{"name":"Adelene Lai","email":"adelenelai@gmail.com","login":null,"count":1}],"past_year_total_commits":6,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.0,"past_year_dds":0.33333333333333337,"last_synced_at":"2023-10-25T22:07:29.049Z","last_synced_commit":"400d40053194cca6c5b95f9faacd6ebd1b3e7d81","created_at":"2023-10-25T13:44:22.041Z","updated_at":"2023-10-25T22:07:29.049Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"CDK-R/cdkr","html_url":"https://github.com/CDK-R/cdkr","last_synced_at":"2025-08-31T23:05:12.175Z","status":null,"issues_count":1,"pull_requests_count":1,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":14498.0,"issues_closed_count":0,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-08-31T20:49:27.937Z","updated_at":"2025-09-01T22:17:00.154Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDK-R%2Fcdkr/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":7,"CONTRIBUTOR":7,"MEMBER":2},"pull_request_author_associations_count":{"NONE":1,"CONTRIBUTOR":1},"issue_authors":{"zachcp":4,"egonw":3,"sneumann":2,"michaelwitting":2,"lauperbe":1,"yangtaotai":1,"xdomingoal":1,"trljcl":1,"Tebatu":1},"pull_request_authors":{"zachcp":1,"olivroy":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10166699,"issues_count":32013288,"pull_requests_count":100268859,"authors_count":10729412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"egonw":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"sneumann","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sneumann"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":2,"IssueCommentEvent":2},"last_year":{"IssuesEvent":1,"WatchEvent":2,"IssueCommentEvent":2}},"keywords":["java","rcdk"],"dependencies":[{"ecosystem":"cran","filepath":"rcdk/DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-16T11:20:35.162Z","updated_at":"2022-08-16T11:20:35.162Z","repository_link":"https://github.com/CDK-R/cdkr/blob/master/rcdk/DESCRIPTION","dependencies":[{"id":1851574305,"package_name":"rcdklibs","ecosystem":"cran","requirements":"\u003e= 2.3","direct":true,"kind":"depends","optional":false},{"id":1851574306,"package_name":"fingerprint","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1851574307,"package_name":"rJava","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1851574308,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1851574309,"package_name":"png","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1851574310,"package_name":"iterators","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1851574311,"package_name":"itertools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1851574312,"package_name":"xtable","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1851574313,"package_name":"RUnit","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1851574314,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1851574315,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1851574316,"package_name":"devtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2023-01-13T16:22:09.312Z","updated_at":"2023-01-13T16:22:09.312Z","repository_link":"https://github.com/CDK-R/cdkr/blob/master/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":6890163215,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890163216,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":6890163217,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":6890163218,"package_name":"actions/setup-java","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":6890163219,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pkgdown.yaml","sha":null,"kind":"manifest","created_at":"2023-01-13T16:22:09.545Z","updated_at":"2023-01-13T16:22:09.545Z","repository_link":"https://github.com/CDK-R/cdkr/blob/master/.github/workflows/pkgdown.yaml","dependencies":[{"id":6890164058,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890164059,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890164060,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890164061,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890164062,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"4.1.4","direct":true,"kind":"composite","optional":false}]}],"score":7.3098814858247865,"created_at":"2025-09-08T11:18:43.444Z","updated_at":"2025-10-07T08:25:12.908Z","avatar_url":"https://github.com/CDK-R.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["cheminformatics","bioinformatics","mass-spectrometry","metabolomics","bioconductor-package","chemical-series","rdkit","bioconductor","feature-detection","peak-detection"],"project_url":"https://science.ecosyste.ms/api/v1/projects/66621","html_url":"https://science.ecosyste.ms/projects/66621"}