{"id":6668,"name":"vdsearch","description":"Viroid-like circRNA discovery and analysis suite","url":"https://github.com/benjamin-lee/vdsearch","last_synced_at":"2025-09-04T19:14:00.870Z","repository":{"id":85156245,"uuid":"462654811","full_name":"Benjamin-Lee/vdsearch","owner":"Benjamin-Lee","description":"Viroid-like circRNA discovery and analysis suite","archived":false,"fork":false,"pushed_at":"2023-11-11T08:22:36.000Z","size":1089,"stargazers_count":15,"open_issues_count":11,"forks_count":2,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-04-11T08:31:12.752Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Benjamin-Lee.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-02-23T08:56:11.000Z","updated_at":"2025-01-21T13:16:33.000Z","dependencies_parsed_at":"2023-11-11T08:27:38.770Z","dependency_job_id":"f8d2423d-49f4-4abf-a2ca-2c99fce0d48c","html_url":"https://github.com/Benjamin-Lee/vdsearch","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Benjamin-Lee/vdsearch","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Benjamin-Lee%2Fvdsearch","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Benjamin-Lee%2Fvdsearch/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Benjamin-Lee%2Fvdsearch/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Benjamin-Lee%2Fvdsearch/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Benjamin-Lee","download_url":"https://codeload.github.com/Benjamin-Lee/vdsearch/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Benjamin-Lee%2Fvdsearch/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273657859,"owners_count":25145183,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Benjamin-Lee","name":"Benjamin Lee","uuid":"13618205","kind":"user","description":"NIH-OxCam scholar at @ncbi \u0026 DPhil student at Oxford. Previously @Harvard CS '20 and @IQTLabs","email":"","website":"benjamindlee.com/about","location":"Tysons, VA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/13618205?u=da62ac6d9e8067acbed91adb69ed19d2886a9a4a\u0026v=4","repositories_count":10,"last_synced_at":"2023-02-27T05:05:13.878Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Benjamin-Lee","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-10T14:40:32.991Z","updated_at":"2023-02-27T05:05:13.879Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Benjamin-Lee","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Benjamin-Lee/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"Benjamin-Lee/vdsearch","html_url":"https://github.com/Benjamin-Lee/vdsearch","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-29T12:59:07.721Z","updated_at":"2025-08-29T12:59:07.721Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Benjamin-Lee%2Fvdsearch","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Benjamin-Lee%2Fvdsearch/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"zhangwenda0518":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10081382,"issues_count":31322741,"pull_requests_count":96214245,"authors_count":10693626,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"zhangwenda0518":1},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":1,"IssueCommentEvent":2,"ForkEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":1,"IssueCommentEvent":2,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-11-11T08:27:38.287Z","updated_at":"2023-11-11T08:27:38.287Z","repository_link":"https://github.com/Benjamin-Lee/vdsearch/blob/master/Dockerfile","dependencies":[{"id":14425357092,"package_name":"nimlang/nim","ecosystem":"docker","requirements":"1.6.10","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2023-11-11T08:27:38.394Z","updated_at":"2023-11-11T08:27:38.394Z","repository_link":"https://github.com/Benjamin-Lee/vdsearch/blob/master/setup.py","dependencies":[{"id":14425357093,"package_name":"click-didyoumean","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357094,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357095,"package_name":"rich","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357096,"package_name":"rich_click","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357097,"package_name":"shellingham","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357098,"package_name":"typer","ecosystem":"pypi","requirements":"\u003c0.6","direct":true,"kind":"runtime","optional":false},{"id":14425357099,"package_name":"scikit-bio","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357100,"package_name":"igraph","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357101,"package_name":"pycirclize","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14425357102,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:50:20.768Z","updated_at":"2025-10-07T08:05:44.822Z","avatar_url":"https://github.com/Benjamin-Lee.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1016/j.cell.2022.12.039"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/6668","html_url":"https://science.ecosyste.ms/projects/6668","bibtex_url":"https://science.ecosyste.ms/projects/6668/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/6668/export.apalike"}