{"id":66726,"name":"timeomics","description":"Time-Course Multi-Omics data integration","url":"https://github.com/abodein/timeomics","last_synced_at":"2025-09-08T13:43:32.273Z","repository":{"id":124275577,"uuid":"210380101","full_name":"abodein/timeOmics","owner":"abodein","description":"Time-Course Multi-Omics data integration","archived":false,"fork":false,"pushed_at":"2024-04-09T19:32:33.000Z","size":3829,"stargazers_count":24,"open_issues_count":0,"forks_count":6,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-26T11:39:35.154Z","etag":null,"topics":["cluster","integration","multi-omics","time-series"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/abodein.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-09-23T14:44:59.000Z","updated_at":"2024-08-29T07:38:07.000Z","dependencies_parsed_at":"2024-04-09T20:37:40.662Z","dependency_job_id":"76354c73-c1b1-4a59-8381-dadfb626da37","html_url":"https://github.com/abodein/timeOmics","commit_stats":{"total_commits":126,"total_committers":4,"mean_commits":31.5,"dds":"0.11904761904761907","last_synced_commit":"1436210cf5eaa51fead055676643da0d952988f4"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/abodein/timeOmics","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abodein","download_url":"https://codeload.github.com/abodein/timeOmics/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274195319,"owners_count":25239147,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"abodein","name":"Antoine Bodein","uuid":"26304093","kind":"user","description":"","email":"","website":null,"location":"Québec ","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/26304093?v=4","repositories_count":2,"last_synced_at":"2023-03-07T21:23:24.639Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/abodein","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-17T17:37:13.292Z","updated_at":"2023-03-07T21:23:24.728Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abodein","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abodein/repositories"},"packages":[],"commits":{"id":1403522,"full_name":"abodein/timeOmics","default_branch":"master","committers":[{"name":"AB LabDesk","email":"bodein.antoine@gmail.com","login":null,"count":111},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":10},{"name":"Antoine Bodein","email":"abodein","login":"abodein","count":3},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"total_commits":126,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":31.5,"dds":0.11904761904761907,"past_year_committers":[{"name":"AntoineB","email":"bodein.antoine@gmail.com","login":null,"count":3},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"past_year_total_commits":5,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.5,"past_year_dds":0.4,"last_synced_at":"2023-10-25T13:17:24.724Z","last_synced_commit":"1436210cf5eaa51fead055676643da0d952988f4","created_at":"2023-10-25T13:16:15.066Z","updated_at":"2023-10-25T13:17:24.725Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483952,"commits_count":854322234,"contributors_count":31144137,"owners_count":908840,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"abodein/timeOmics","html_url":"https://github.com/abodein/timeOmics","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-01T01:36:37.349Z","updated_at":"2025-09-01T09:27:27.772Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/abodein%2FtimeOmics/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":3},"pull_request_author_associations_count":{},"issue_authors":{"minisciencegirl":1,"lshep":1,"RubenRBakker":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10166699,"issues_count":32013288,"pull_requests_count":100268859,"authors_count":10729412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["cluster","integration","multi-omics","time-series"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-10-20T16:16:59.911Z","updated_at":"2023-10-20T16:16:59.911Z","repository_link":"https://github.com/abodein/timeOmics/blob/master/DESCRIPTION","dependencies":[{"id":14264669496,"package_name":"mixOmics","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14264669583,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0","direct":true,"kind":"depends","optional":false},{"id":14264669584,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669585,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669586,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669587,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669588,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669607,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669608,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669609,"package_name":"ggrepel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264669678,"package_name":"lmtest","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264670107,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14264670108,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14264670118,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14264670119,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14264670120,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14264670121,"package_name":"snow","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14264670165,"package_name":"tidyverse","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14264670261,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14264670375,"package_name":"gplots","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":4.564348191467836,"created_at":"2025-09-08T11:18:43.973Z","updated_at":"2025-10-07T08:25:14.429Z","avatar_url":"https://github.com/abodein.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["http://dx.doi.org/10.3389/fgene.2019.00963"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","gene","grna-sequence","genomics","transcriptomics","ontology","immune-repertoire","sequencing","proteomics"],"project_url":"https://science.ecosyste.ms/api/v1/projects/66726","html_url":"https://science.ecosyste.ms/projects/66726"}