{"id":66738,"name":"chimeraviz","description":"chimeraviz is an R package that automates the creation of chimeric RNA visualizations.","url":"https://github.com/stianlagstad/chimeraviz","last_synced_at":"2025-09-08T13:43:57.020Z","repository":{"id":52438234,"uuid":"74788121","full_name":"stianlagstad/chimeraviz","owner":"stianlagstad","description":"chimeraviz is an R package that automates the creation of chimeric RNA visualizations.","archived":false,"fork":false,"pushed_at":"2023-11-25T16:53:54.000Z","size":3039,"stargazers_count":37,"open_issues_count":12,"forks_count":13,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-08-29T01:48:29.799Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/stianlagstad.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2016-11-25T21:06:48.000Z","updated_at":"2024-09-03T18:23:29.000Z","dependencies_parsed_at":"2023-01-18T19:46:38.957Z","dependency_job_id":"77d6a62f-3326-41dd-a650-b0b129796e6c","html_url":"https://github.com/stianlagstad/chimeraviz","commit_stats":{"total_commits":246,"total_committers":16,"mean_commits":15.375,"dds":0.3455284552845529,"last_synced_commit":"2d0306e8b77ecb77cd60ae2cd0e62d7a8833dfc1"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/stianlagstad/chimeraviz","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stianlagstad","download_url":"https://codeload.github.com/stianlagstad/chimeraviz/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274195324,"owners_count":25239147,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"stianlagstad","name":"Stian Lågstad","uuid":"4340859","kind":"user","description":"","email":"","website":"www.stianlagstad.no","location":"Oslo","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/4340859?v=4","repositories_count":2,"last_synced_at":"2023-11-26T19:44:38.695Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/stianlagstad","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-11-26T19:44:38.710Z","updated_at":"2023-11-26T19:44:38.710Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stianlagstad","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stianlagstad/repositories"},"packages":[{"id":8418992,"name":"chimeraviz","ecosystem":"bioconductor","description":"Visualization tools for gene fusions","homepage":"https://github.com/stianlagstad/chimeraviz ","licenses":"Artistic-2.0","normalized_licenses":["Artistic-2.0"],"repository_url":"https://github.com/stianlagstad/chimeraviz","keywords_array":["Alignment","Infrastructure","Software"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:24:20.811Z","latest_release_published_at":"2025-04-28T15:40:19.634Z","latest_release_number":"1.34.0","last_synced_at":"2025-08-28T21:40:28.003Z","created_at":"2023-10-12T14:24:20.607Z","updated_at":"2025-08-28T21:48:15.229Z","registry_url":"https://bioconductor.org/packages/chimeraviz","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/chimeraviz/inst/doc/chimeraviz.pdf","metadata":{},"repo_metadata":{"id":52438234,"uuid":"74788121","full_name":"stianlagstad/chimeraviz","owner":"stianlagstad","description":"chimeraviz is an R package that automates the creation of chimeric RNA visualizations.","archived":false,"fork":false,"pushed_at":"2023-11-25T16:53:54.000Z","size":3039,"stargazers_count":37,"open_issues_count":12,"forks_count":13,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-07-28T19:36:43.336Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/stianlagstad.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2016-11-25T21:06:48.000Z","updated_at":"2024-09-03T18:23:29.000Z","dependencies_parsed_at":"2023-01-18T19:46:38.957Z","dependency_job_id":"77d6a62f-3326-41dd-a650-b0b129796e6c","html_url":"https://github.com/stianlagstad/chimeraviz","commit_stats":{"total_commits":246,"total_committers":16,"mean_commits":15.375,"dds":0.3455284552845529,"last_synced_commit":"2d0306e8b77ecb77cd60ae2cd0e62d7a8833dfc1"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/stianlagstad/chimeraviz","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stianlagstad","download_url":"https://codeload.github.com/stianlagstad/chimeraviz/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272562884,"owners_count":24956035,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-28T02:00:10.768Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"stianlagstad","name":"Stian Lågstad","uuid":"4340859","kind":"user","description":"","email":"","website":"www.stianlagstad.no","location":"Oslo","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/4340859?v=4","repositories_count":2,"last_synced_at":"2023-11-26T19:44:38.695Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/stianlagstad","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-11-26T19:44:38.710Z","updated_at":"2023-11-26T19:44:38.710Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stianlagstad","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stianlagstad/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-28T21:48:15.229Z","dependent_packages_count":0,"downloads":21633,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":48.60681114551084,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":16.202270381836946},"purl":"pkg:bioconductor/chimeraviz","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/chimeraviz","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/chimeraviz","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/chimeraviz/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/chimeraviz/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/chimeraviz/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/chimeraviz/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/chimeraviz/related_packages","maintainers":[{"uuid":"stianlagstad@gmail.com","login":null,"name":"Stian Lågstad","email":"stianlagstad@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-25T14:05:35.577Z","updated_at":"2023-11-25T14:05:35.577Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/stianlagstad@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402829,"full_name":"stianlagstad/chimeraviz","default_branch":"master","committers":[{"name":"Stian Lågstad","email":"stianlagstad@gmail.com","login":null,"count":161},{"name":"Stian Lågstad","email":"stian.lagstad@knowit.no","login":null,"count":32},{"name":"s.lagstad","email":"s.lagstad@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":15},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":14},{"name":"Stian Lågstad","email":"stilag@knowit.no","login":null,"count":4},{"name":"hpages@fhcrc.org","email":"hpages@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":3},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"Stian Lågstad","email":"stian.lagstad@cognite.com","login":null,"count":2},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1},{"name":"Benjamin Nutter","email":"benjamin.nutter@gmail.com","login":"nutterb","count":1},{"name":"mtmorgan@fhcrc.org","email":"mtmorgan@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1}],"total_commits":246,"total_committers":16,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":15.375,"dds":0.3455284552845529,"past_year_committers":[{"name":"Stian Lågstad","email":"stianlagstad@gmail.com","login":null,"count":4},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2}],"past_year_total_commits":8,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.6666666666666665,"past_year_dds":0.5,"last_synced_at":"2023-10-25T13:03:23.593Z","last_synced_commit":"2d0306e8b77ecb77cd60ae2cd0e62d7a8833dfc1","created_at":"2023-10-25T13:03:20.502Z","updated_at":"2023-10-25T13:03:23.594Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:13.651Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"stianlagstad/chimeraviz","html_url":"https://github.com/stianlagstad/chimeraviz","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-01T00:12:21.739Z","updated_at":"2025-09-01T01:05:50.322Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/stianlagstad%2Fchimeraviz/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"JReneWong":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10166699,"issues_count":32013288,"pull_requests_count":100268859,"authors_count":10729412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssueCommentEvent":2},"last_year":{"IssueCommentEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"conda","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2022-08-19T03:50:16.935Z","updated_at":"2022-08-19T03:50:16.935Z","repository_link":"https://github.com/stianlagstad/chimeraviz/blob/master/environment.yml","dependencies":[{"id":1991408706,"package_name":"bioconductor-annotationdbi","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408732,"package_name":"r-magick","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408707,"package_name":"bioconductor-annotationfilter","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408708,"package_name":"bioconductor-biocstyle","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408709,"package_name":"bioconductor-biostrings","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408710,"package_name":"bioconductor-ensembldb","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408711,"package_name":"bioconductor-genomeinfodb","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408712,"package_name":"bioconductor-genomicalignments","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408713,"package_name":"bioconductor-genomicranges","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408714,"package_name":"bioconductor-graph","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408715,"package_name":"bioconductor-gviz","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408716,"package_name":"bioconductor-iranges","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408717,"package_name":"bioconductor-org.hs.eg.db","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408718,"package_name":"bioconductor-org.mm.eg.db","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408719,"package_name":"bioconductor-rgraphviz","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408720,"package_name":"bioconductor-rsamtools","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408721,"package_name":"bioconductor-s4vectors","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408722,"package_name":"r-argumentcheck","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408723,"package_name":"r-base","ecosystem":"conda","requirements":"3.6.1.*","direct":true,"kind":"runtime","optional":false},{"id":1991408724,"package_name":"r-data.table","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408725,"package_name":"r-devtools","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408726,"package_name":"r-dplyr","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408727,"package_name":"r-dt","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408728,"package_name":"r-gridbase","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408729,"package_name":"r-gtools","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408730,"package_name":"r-knitr","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408731,"package_name":"r-lintr","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408733,"package_name":"r-plyr","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408734,"package_name":"r-rcircos","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408735,"package_name":"r-rcolorbrewer","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408736,"package_name":"r-rmarkdown","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408737,"package_name":"r-roxygen2","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":1991408738,"package_name":"r-testthat","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-19T03:50:17.038Z","updated_at":"2022-08-19T03:50:17.038Z","repository_link":"https://github.com/stianlagstad/chimeraviz/blob/master/DESCRIPTION","dependencies":[{"id":1991410091,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410092,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410093,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410094,"package_name":"Gviz","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410095,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410096,"package_name":"ensembldb","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410097,"package_name":"AnnotationFilter","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410098,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1991410099,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410100,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410101,"package_name":"Rsamtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410102,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410103,"package_name":"GenomicAlignments","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410104,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410105,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410106,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410107,"package_name":"RCircos","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410108,"package_name":"org.Hs.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410109,"package_name":"org.Mm.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410110,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410111,"package_name":"graph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410112,"package_name":"Rgraphviz","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410113,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410114,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410115,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410116,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410117,"package_name":"checkmate","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410118,"package_name":"gtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410119,"package_name":"magick","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1991410120,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1991410121,"package_name":"roxygen2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1991410122,"package_name":"devtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1991410123,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1991410124,"package_name":"lintr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":16.64643045054064,"created_at":"2025-09-08T11:18:44.012Z","updated_at":"2025-10-07T08:25:14.533Z","avatar_url":"https://github.com/stianlagstad.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1016/j.jmoldx.2020.02.012","https://doi.org/10.3390/biology11050625"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","genomics","gene","transcriptomics","looking-for-maintainer","human-cell-atlas","scrna-seq","single-cell-rna-seq","metabolomics","mass-spectrometry"],"project_url":"https://science.ecosyste.ms/api/v1/projects/66738","html_url":"https://science.ecosyste.ms/projects/66738"}