{"id":66866,"name":"cpg-gnomad","description":"Hail helper functions for the gnomAD project and Translational Genomics Group","url":"https://github.com/broadinstitute/gnomad_methods","last_synced_at":"2025-09-08T13:45:59.717Z","repository":{"id":38393492,"uuid":"105179220","full_name":"broadinstitute/gnomad_methods","owner":"broadinstitute","description":"Hail helper functions for the gnomAD project and Translational Genomics Group","archived":false,"fork":false,"pushed_at":"2025-08-22T19:26:15.000Z","size":6777,"stargazers_count":96,"open_issues_count":18,"forks_count":30,"subscribers_count":24,"default_branch":"main","last_synced_at":"2025-08-22T20:58:13.644Z","etag":null,"topics":["exomes","genomes","genomics","hail"],"latest_commit_sha":null,"homepage":"https://gnomad.broadinstitute.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/broadinstitute.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-09-28T17:34:58.000Z","updated_at":"2025-08-22T18:21:20.000Z","dependencies_parsed_at":"2023-09-26T17:57:07.620Z","dependency_job_id":"281cb5ed-939e-4619-be2b-766101428247","html_url":"https://github.com/broadinstitute/gnomad_methods","commit_stats":{"total_commits":1996,"total_committers":32,"mean_commits":62.375,"dds":0.8151302605210421,"last_synced_commit":"f0b8c42836dfa5ca748fe437b646aba07deb7b01"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/broadinstitute/gnomad_methods","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/sbom","scorecard":{"id":254253,"data":{"date":"2025-08-11","repo":{"name":"github.com/broadinstitute/gnomad_methods","commit":"41168d12b0d4f0e941a4c7c9daa06807116df011"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6,"checks":[{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Maintained","score":10,"reason":"30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":10,"reason":"all changesets reviewed","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/ci.yml:1","Warn: no topLevel permission defined: .github/workflows/publish.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/publish.yml:8"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:48: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:50: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:54: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:102: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:106: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:112: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/ci.yml:116: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/ci.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/publish.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/publish.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/publish.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/publish.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/publish.yml:27: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/publish.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/publish.yml:47: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/publish.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/publish.yml:52: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gnomad_methods/publish.yml/main?enable=pin","Warn: containerImage not pinned by hash: docker_files/Dockerfile_VEP105:1: pin your Docker image by updating ensemblorg/ensembl-vep:release_105.0 to ensemblorg/ensembl-vep:release_105.0@sha256:ff5e18b67d3d3688c8cc3265946a50dd115886adb2df475c66d7716e303d0817","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:27","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:28","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:29","Warn: downloadThenRun not pinned by hash: .github/workflows/ci.yml:30","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:62","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:63","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:64","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:124","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:125","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:127","Warn: pipCommand not pinned by hash: .github/workflows/ci.yml:128","Warn: pipCommand not pinned by hash: .github/workflows/publish.yml:35","Warn: pipCommand not pinned by hash: .github/workflows/publish.yml:36","Warn: pipCommand not pinned by hash: .github/workflows/publish.yml:37","Warn: pipCommand not pinned by hash: .github/workflows/publish.yml:38","Warn: downloadThenRun not pinned by hash: .github/workflows/publish.yml:39","Info:   0 out of  14 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   1 third-party GitHubAction dependencies pinned","Info:   0 out of   1 containerImage dependencies pinned","Info:   0 out of  14 pipCommand dependencies pinned","Info:   0 out of   2 downloadThenRun dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":2,"reason":"8 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-cpwx-vrp4-4pq7","Warn: Project is vulnerable to: GHSA-9hjg-9r4m-mvj7","Warn: Project is vulnerable to: GHSA-48p4-8xcf-vxj5","Warn: Project is vulnerable to: GHSA-pq67-6m6q-mj2v","Warn: Project is vulnerable to: PYSEC-2023-271 / GHSA-487p-qx68-5vjw","Warn: Project is vulnerable to: PYSEC-2020-107 / GHSA-jjw5-xxj6-pcv5","Warn: Project is vulnerable to: PYSEC-2024-110 / GHSA-jw8x-6495-233v","Warn: Project is vulnerable to: PYSEC-2020-108"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":10,"reason":"SAST tool is run on all commits","details":["Info: all commits (30) are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-17T09:14:06.988Z","repository_id":38393492,"created_at":"2025-08-17T09:14:06.989Z","updated_at":"2025-08-17T09:14:06.989Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274195462,"owners_count":25239147,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"broadinstitute","name":"Broad Institute","uuid":"393552","kind":"organization","description":"Broad Institute of MIT and Harvard","email":null,"website":"http://www.broadinstitute.org/","location":"Cambridge, MA","twitter":"broadinstitute","company":null,"icon_url":"https://avatars.githubusercontent.com/u/393552?v=4","repositories_count":1083,"last_synced_at":"2023-04-09T09:48:11.262Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/broadinstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T16:23:28.278Z","updated_at":"2023-04-09T09:48:11.836Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute/repositories"},"packages":[{"id":2681918,"name":"cpg-gnomad","ecosystem":"pypi","description":"Hail utilities for the Genome Aggregation Database","homepage":"https://github.com/broadinstitute/gnomad_methods","licenses":"MIT License","normalized_licenses":["MIT"],"repository_url":"https://github.com/broadinstitute/gnomad_methods","keywords_array":[],"namespace":null,"versions_count":7,"first_release_published_at":"2022-01-12T07:19:42.000Z","latest_release_published_at":"2022-08-16T04:52:15.000Z","latest_release_number":"0.6.3","last_synced_at":"2025-08-22T21:36:31.018Z","created_at":"2022-04-10T10:28:09.497Z","updated_at":"2025-08-22T21:36:31.018Z","registry_url":"https://pypi.org/project/cpg-gnomad/","install_command":"pip install cpg-gnomad --index-url https://pypi.org/simple","documentation_url":"https://broadinstitute.github.io/gnomad_methods/","metadata":{"funding":null,"documentation":"https://broadinstitute.github.io/gnomad_methods/","classifiers":["Development Status :: 4 - Beta","Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Programming Language :: Python :: 3","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"cpg-gnomad","project_status":null},"repo_metadata":{"id":38393492,"uuid":"105179220","full_name":"broadinstitute/gnomad_methods","owner":"broadinstitute","description":"Hail helper functions for the gnomAD project and Translational Genomics Group","archived":false,"fork":false,"pushed_at":"2024-08-27T13:56:56.000Z","size":6330,"stargazers_count":85,"open_issues_count":18,"forks_count":26,"subscribers_count":26,"default_branch":"main","last_synced_at":"2024-08-27T15:14:22.844Z","etag":null,"topics":["exomes","genomes","genomics","hail"],"latest_commit_sha":null,"homepage":"https://gnomad.broadinstitute.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/broadinstitute.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-09-28T17:34:58.000Z","updated_at":"2024-08-23T19:46:56.000Z","dependencies_parsed_at":"2023-09-26T17:57:07.620Z","dependency_job_id":"281cb5ed-939e-4619-be2b-766101428247","html_url":"https://github.com/broadinstitute/gnomad_methods","commit_stats":{"total_commits":1996,"total_committers":32,"mean_commits":62.375,"dds":0.8151302605210421,"last_synced_commit":"f0b8c42836dfa5ca748fe437b646aba07deb7b01"},"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":217191279,"owners_count":16139401,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"broadinstitute","name":"Broad Institute","uuid":"393552","kind":"organization","description":"Broad Institute of MIT and Harvard","email":null,"website":"http://www.broadinstitute.org/","location":"Cambridge, MA","twitter":"broadinstitute","company":null,"icon_url":"https://avatars.githubusercontent.com/u/393552?v=4","repositories_count":1083,"last_synced_at":"2023-04-09T09:48:11.262Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/broadinstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T16:23:28.278Z","updated_at":"2023-04-09T09:48:11.836Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute/repositories"},"tags":[{"name":"v0.8.1","sha":"6411b7ef5bd94671fd420fedf9eab0c4b7a1113f","kind":"commit","published_at":"2024-07-29T16:43:40.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.8.1","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.1/manifests"},{"name":"v0.8.0","sha":"7879adb21bad05d2ae151670efabfa6f58e394ad","kind":"commit","published_at":"2024-04-19T13:30:42.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.8.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.0/manifests"},{"name":"v0.7.1","sha":"5bd2071183cb3d4cdc9f1ce19f3f39a82dba7021","kind":"commit","published_at":"2023-10-31T18:49:49.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.7.1","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.1/manifests"},{"name":"v0.7.0","sha":"abf42b1cd787213d40290d892439cea3ad9f3579","kind":"commit","published_at":"2023-10-31T16:19:52.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.7.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.0/manifests"},{"name":"v0.6.4","sha":"608aed2069541c843c2b6628be4faf7fdd99d43a","kind":"commit","published_at":"2022-11-08T14:52:08.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.4","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.4","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.4/manifests"},{"name":"v0.6.3","sha":"f87db402fdb682f90457d2944033c12f67633efb","kind":"commit","published_at":"2022-10-27T19:19:30.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.3","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.3/manifests"},{"name":"v0.6.2","sha":"ae139ceb9617f6a908d70036f455343d9ffdf9b3","kind":"tag","published_at":"2022-05-10T18:37:19.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.2","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.2","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.2/manifests"},{"name":"v0.6.1","sha":"6203d8384d3554a0eba6bede1611375733a3db87","kind":"commit","published_at":"2022-01-06T16:46:17.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.1","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.1/manifests"},{"name":"v0.6.0","sha":"1f2d022a4682a8f2d39afcedf2a48581322a3d3f","kind":"commit","published_at":"2021-09-03T17:39:58.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.0/manifests"},{"name":"v0.5.0","sha":"0ab8bafbc7256b16fa67d239eef19a9484e57f4c","kind":"commit","published_at":"2021-04-22T20:49:00.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.5.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.5.0/manifests"},{"name":"v0.4.0","sha":"23c49c14ae89645dc7699754ca9f06d288c1ab82","kind":"commit","published_at":"2020-07-09T14:16:30.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.4.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.4.0/manifests"},{"name":"v0.3.0","sha":"c4574931dedeeac5abfd5659ac179900e35c48f1","kind":"commit","published_at":"2020-04-28T19:42:40.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.3.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.3.0/manifests"},{"name":"v0.2.0","sha":"9adbc5fa6d408531266c92a505c18ba64dbf4c01","kind":"commit","published_at":"2020-04-03T15:18:51.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.2.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.2.0/manifests"},{"name":"v0.1.0","sha":"790c9726d5e272a37bed2b7080b38efad661e87f","kind":"commit","published_at":"2020-03-04T15:15:06.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.1.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2024-08-27T15:23:39.084Z","dependent_packages_count":0,"downloads":17,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":35.86513629842181,"dependent_repos_count":21.66152068531463,"dependent_packages_count":10.032368031403879,"stargazers_count":8.02601377199694,"forks_count":7.667720017751389,"docker_downloads_count":null,"average":16.650551760977727},"purl":"pkg:pypi/cpg-gnomad","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/cpg-gnomad","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/cpg-gnomad","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/cpg-gnomad/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2024-08-23T21:30:33.516Z","issues_count":54,"pull_requests_count":278,"avg_time_to_close_issue":28023161.333333332,"avg_time_to_close_pull_request":953332.2117647058,"issues_closed_count":42,"pull_requests_closed_count":255,"pull_request_authors_count":15,"issue_authors_count":18,"avg_comments_per_issue":1.6851851851851851,"avg_comments_per_pull_request":0.5935251798561151,"merged_pull_requests_count":221,"bot_issues_count":0,"bot_pull_requests_count":17,"past_year_issues_count":9,"past_year_pull_requests_count":176,"past_year_avg_time_to_close_issue":287398.2,"past_year_avg_time_to_close_pull_request":720231.3225806452,"past_year_issues_closed_count":5,"past_year_pull_requests_closed_count":155,"past_year_pull_request_authors_count":10,"past_year_issue_authors_count":5,"past_year_avg_comments_per_issue":0.6666666666666666,"past_year_avg_comments_per_pull_request":0.5113636363636364,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":13,"past_year_merged_pull_requests_count":138,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/issues","maintainers":[{"login":"nawatts","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nawatts"},{"login":"konradjk","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/konradjk"}],"active_maintainers":[{"login":"konradjk","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/konradjk"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cpg-gnomad/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cpg-gnomad/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cpg-gnomad/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cpg-gnomad/related_packages","maintainers":[{"uuid":"cpg","login":"cpg","name":null,"email":null,"url":null,"packages_count":10,"html_url":"https://pypi.org/user/cpg/","role":null,"created_at":"2023-02-23T21:33:12.265Z","updated_at":"2023-02-23T21:33:12.265Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/cpg/packages"},{"uuid":"vladsaveliev","login":"vladsaveliev","name":null,"email":null,"url":null,"packages_count":14,"html_url":"https://pypi.org/user/vladsaveliev/","role":null,"created_at":"2023-02-23T21:33:12.271Z","updated_at":"2023-02-23T21:33:12.271Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/vladsaveliev/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726146,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}},{"id":2749979,"name":"gnomad","ecosystem":"pypi","description":"Hail utilities for the Genome Aggregation Database","homepage":"https://github.com/broadinstitute/gnomad_methods","licenses":"MIT License","normalized_licenses":["MIT"],"repository_url":"https://github.com/broadinstitute/gnomad_methods","keywords_array":[],"namespace":null,"versions_count":15,"first_release_published_at":"2020-03-04T17:52:38.000Z","latest_release_published_at":"2025-01-24T16:13:09.000Z","latest_release_number":"0.8.2","last_synced_at":"2025-08-22T21:36:38.601Z","created_at":"2022-04-10T11:09:43.931Z","updated_at":"2025-08-22T21:36:38.602Z","registry_url":"https://pypi.org/project/gnomad/","install_command":"pip install gnomad --index-url https://pypi.org/simple","documentation_url":"https://broadinstitute.github.io/gnomad_methods/","metadata":{"funding":null,"documentation":"https://broadinstitute.github.io/gnomad_methods/","classifiers":["Development Status :: 4 - Beta","Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Programming Language :: Python :: 3","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"gnomad","project_status":null},"repo_metadata":{"id":38393492,"uuid":"105179220","full_name":"broadinstitute/gnomad_methods","owner":"broadinstitute","description":"Hail helper functions for the gnomAD project and Translational Genomics Group","archived":false,"fork":false,"pushed_at":"2024-08-27T13:56:56.000Z","size":6330,"stargazers_count":85,"open_issues_count":18,"forks_count":26,"subscribers_count":26,"default_branch":"main","last_synced_at":"2024-08-27T15:14:22.844Z","etag":null,"topics":["exomes","genomes","genomics","hail"],"latest_commit_sha":null,"homepage":"https://gnomad.broadinstitute.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/broadinstitute.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-09-28T17:34:58.000Z","updated_at":"2024-08-23T19:46:56.000Z","dependencies_parsed_at":"2023-09-26T17:57:07.620Z","dependency_job_id":"281cb5ed-939e-4619-be2b-766101428247","html_url":"https://github.com/broadinstitute/gnomad_methods","commit_stats":{"total_commits":1996,"total_committers":32,"mean_commits":62.375,"dds":0.8151302605210421,"last_synced_commit":"f0b8c42836dfa5ca748fe437b646aba07deb7b01"},"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":217191279,"owners_count":16139401,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"broadinstitute","name":"Broad Institute","uuid":"393552","kind":"organization","description":"Broad Institute of MIT and Harvard","email":null,"website":"http://www.broadinstitute.org/","location":"Cambridge, MA","twitter":"broadinstitute","company":null,"icon_url":"https://avatars.githubusercontent.com/u/393552?v=4","repositories_count":1083,"last_synced_at":"2023-04-09T09:48:11.262Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/broadinstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T16:23:28.278Z","updated_at":"2023-04-09T09:48:11.836Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute/repositories"},"tags":[{"name":"v0.8.1","sha":"6411b7ef5bd94671fd420fedf9eab0c4b7a1113f","kind":"commit","published_at":"2024-07-29T16:43:40.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.8.1","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.1/manifests"},{"name":"v0.8.0","sha":"7879adb21bad05d2ae151670efabfa6f58e394ad","kind":"commit","published_at":"2024-04-19T13:30:42.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.8.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.8.0/manifests"},{"name":"v0.7.1","sha":"5bd2071183cb3d4cdc9f1ce19f3f39a82dba7021","kind":"commit","published_at":"2023-10-31T18:49:49.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.7.1","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.1/manifests"},{"name":"v0.7.0","sha":"abf42b1cd787213d40290d892439cea3ad9f3579","kind":"commit","published_at":"2023-10-31T16:19:52.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.7.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.7.0/manifests"},{"name":"v0.6.4","sha":"608aed2069541c843c2b6628be4faf7fdd99d43a","kind":"commit","published_at":"2022-11-08T14:52:08.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.4","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.4","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.4/manifests"},{"name":"v0.6.3","sha":"f87db402fdb682f90457d2944033c12f67633efb","kind":"commit","published_at":"2022-10-27T19:19:30.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.3","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.3/manifests"},{"name":"v0.6.2","sha":"ae139ceb9617f6a908d70036f455343d9ffdf9b3","kind":"tag","published_at":"2022-05-10T18:37:19.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.2","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.2","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.2/manifests"},{"name":"v0.6.1","sha":"6203d8384d3554a0eba6bede1611375733a3db87","kind":"commit","published_at":"2022-01-06T16:46:17.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.1","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.1/manifests"},{"name":"v0.6.0","sha":"1f2d022a4682a8f2d39afcedf2a48581322a3d3f","kind":"commit","published_at":"2021-09-03T17:39:58.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.6.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.6.0/manifests"},{"name":"v0.5.0","sha":"0ab8bafbc7256b16fa67d239eef19a9484e57f4c","kind":"commit","published_at":"2021-04-22T20:49:00.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.5.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.5.0/manifests"},{"name":"v0.4.0","sha":"23c49c14ae89645dc7699754ca9f06d288c1ab82","kind":"commit","published_at":"2020-07-09T14:16:30.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.4.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.4.0/manifests"},{"name":"v0.3.0","sha":"c4574931dedeeac5abfd5659ac179900e35c48f1","kind":"commit","published_at":"2020-04-28T19:42:40.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.3.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.3.0/manifests"},{"name":"v0.2.0","sha":"9adbc5fa6d408531266c92a505c18ba64dbf4c01","kind":"commit","published_at":"2020-04-03T15:18:51.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.2.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.2.0/manifests"},{"name":"v0.1.0","sha":"790c9726d5e272a37bed2b7080b38efad661e87f","kind":"commit","published_at":"2020-03-04T15:15:06.000Z","download_url":"https://codeload.github.com/broadinstitute/gnomad_methods/tar.gz/v0.1.0","html_url":"https://github.com/broadinstitute/gnomad_methods/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2024-08-27T15:23:39.129Z","dependent_packages_count":0,"downloads":1746,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":9.038441345208435,"dependent_repos_count":21.627614287651376,"dependent_packages_count":10.069287946036377,"stargazers_count":8.029321123199889,"forks_count":7.669585540309861,"docker_downloads_count":1.0947239802590758,"average":9.588162370444168},"purl":"pkg:pypi/gnomad","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/gnomad","docker_dependents_count":3,"docker_downloads_count":104255,"usage_url":"https://repos.ecosyste.ms/usage/pypi/gnomad","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/gnomad/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2024-08-23T21:30:33.516Z","issues_count":54,"pull_requests_count":278,"avg_time_to_close_issue":28023161.333333332,"avg_time_to_close_pull_request":953332.2117647058,"issues_closed_count":42,"pull_requests_closed_count":255,"pull_request_authors_count":15,"issue_authors_count":18,"avg_comments_per_issue":1.6851851851851851,"avg_comments_per_pull_request":0.5935251798561151,"merged_pull_requests_count":221,"bot_issues_count":0,"bot_pull_requests_count":17,"past_year_issues_count":9,"past_year_pull_requests_count":176,"past_year_avg_time_to_close_issue":287398.2,"past_year_avg_time_to_close_pull_request":720231.3225806452,"past_year_issues_closed_count":5,"past_year_pull_requests_closed_count":155,"past_year_pull_request_authors_count":10,"past_year_issue_authors_count":5,"past_year_avg_comments_per_issue":0.6666666666666666,"past_year_avg_comments_per_pull_request":0.5113636363636364,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":13,"past_year_merged_pull_requests_count":138,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/issues","maintainers":[{"login":"nawatts","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nawatts"},{"login":"konradjk","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/konradjk"}],"active_maintainers":[{"login":"konradjk","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/konradjk"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gnomad/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gnomad/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gnomad/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gnomad/related_packages","maintainers":[{"uuid":"gnomad","login":"gnomad","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/gnomad/","role":null,"created_at":"2022-11-26T09:44:17.492Z","updated_at":"2022-11-26T09:44:17.492Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/gnomad/packages"},{"uuid":"gtiao","login":"gtiao","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/gtiao/","role":null,"created_at":"2022-11-26T09:44:17.501Z","updated_at":"2022-11-26T09:44:17.501Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/gtiao/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726146,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":553745,"full_name":"broadinstitute/gnomad_methods","default_branch":"main","committers":[{"name":"jkgoodrich","email":"jgoodric@broadinstitute.org","login":"jkgoodrich","count":707},{"name":"Qin He","email":"44242118+KoalaQin","login":"KoalaQin","count":397},{"name":"Mike Wilson","email":"mwilson@broadinstitute.org","login":"mike-w-wilson","count":339},{"name":"klaricch","email":"kristen@broadinstitute.org","login":"klaricch","count":326},{"name":"Katherine Chao","email":"kchao@broadinstitute.org","login":"ch-kr","count":262},{"name":"konradjk","email":"konradjkarczewski@gmail.com","login":"konradjk","count":225},{"name":"laurent","email":"lfran@broadinstitute.org","login":"lfrancioli","count":197},{"name":"Nick Watts","email":"nwatts@broadinstitute.org","login":"nawatts","count":109},{"name":"gtiao","email":"gtiao@broadinstitute.org","login":"gtiao","count":77},{"name":"Kyle Ferriter","email":"kferrite@broadinstitute.org","login":"theferrit32","count":39},{"name":"averywpx","email":"averywpx@gmail.com","login":null,"count":32},{"name":"wlu04","email":"wlu04","login":"wlu04","count":29},{"name":"Daniel Marten","email":"marten@broadinstitute.org","login":"matren395","count":26},{"name":"wphu","email":"williamphu42@gmail.com","login":"williamphu","count":23},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":12},{"name":"averywpx","email":"51382435+averywpx","login":"averywpx","count":7},{"name":"Masahiro Kanai","email":"mkanai@broadinstitute.org","login":"mkanai","count":2},{"name":"Besse Cummings","email":"berylc@broadinstitute.org","login":"berylc","count":2},{"name":"Daniel King","email":"dking@broadinstitute.org","login":null,"count":2},{"name":"Tim Poterba","email":"tpoterba@gmail.com","login":"tpoterba","count":1},{"name":"Rayna M Harris","email":"raynamharris","login":"raynamharris","count":1},{"name":"QingboWang","email":"QingboWang","login":"QingboWang","count":1},{"name":"Matthew Solomonson","email":"ggmatt@gmail.com","login":"mattsolo1","count":1},{"name":"Konrad Karczewski","email":"konradk@broadinstitute.org","login":"macarthurlab","count":1},{"name":"John Marshall","email":"john.marshall@populationgenomics.org.au","login":"jmarshall","count":1},{"name":"Konrad Karczewski","email":"konradk@Konrads-MacBook-Pro.local","login":null,"count":1},{"name":"Chris Vittal","email":"chris@vittal.dev","login":"chrisvittal","count":1}],"total_commits":2821,"total_committers":27,"total_bot_commits":12,"total_bot_committers":1,"mean_commits":104.48148148148148,"dds":0.749379652605459,"past_year_committers":[{"name":"Qin He","email":"44242118+KoalaQin","login":"KoalaQin","count":168},{"name":"Kristen Laricchia","email":"kristen@broadinstitute.org","login":"klaricch","count":163},{"name":"jkgoodrich","email":"33063077+jkgoodrich","login":"jkgoodrich","count":127},{"name":"Mike Wilson","email":"mwilson@broadinstitute.org","login":"mike-w-wilson","count":21},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":7},{"name":"Katherine Chao","email":"kchao@broadinstitute.org","login":"ch-kr","count":3}],"past_year_total_commits":489,"past_year_total_committers":6,"past_year_total_bot_commits":7,"past_year_total_bot_committers":1,"past_year_mean_commits":81.5,"past_year_dds":0.656441717791411,"last_synced_at":"2025-05-16T20:17:54.526Z","last_synced_commit":"6d0b27b0432d8c999b829c714ebac747c6b60876","created_at":"2023-03-09T04:46:40.123Z","updated_at":"2025-05-16T20:17:54.543Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:08.406Z","repositories_count":5479765,"commits_count":853310318,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"broadinstitute/gnomad_methods","html_url":"https://github.com/broadinstitute/gnomad_methods","last_synced_at":"2025-08-31T07:50:13.143Z","status":null,"issues_count":68,"pull_requests_count":307,"avg_time_to_close_issue":29846307.214285713,"avg_time_to_close_pull_request":1020782.4068965517,"issues_closed_count":56,"pull_requests_closed_count":290,"pull_request_authors_count":16,"issue_authors_count":21,"avg_comments_per_issue":1.6323529411764706,"avg_comments_per_pull_request":0.5667752442996743,"merged_pull_requests_count":257,"bot_issues_count":0,"bot_pull_requests_count":16,"past_year_issues_count":13,"past_year_pull_requests_count":74,"past_year_avg_time_to_close_issue":1142494.7777777778,"past_year_avg_time_to_close_pull_request":927209.2419354839,"past_year_issues_closed_count":9,"past_year_pull_requests_closed_count":62,"past_year_pull_request_authors_count":8,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":1.1538461538461537,"past_year_avg_comments_per_pull_request":0.3783783783783784,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":4,"past_year_merged_pull_requests_count":61,"created_at":"2023-05-14T11:11:28.660Z","updated_at":"2025-09-03T05:03:08.312Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgnomad_methods/issues","issue_labels_count":{"Needs Refinement":5,"Epic":4,"Frequency":2,"Unplanned":2,"enhancement":2,"v4":2,"v5":2,"Sample QC":1,"bug":1,"annotation":1,"Changelog: new feature":1},"pull_request_labels_count":{"Changelog: new feature":139,"Changelog: ignore":78,"Changelog: bug fix":32,"dependencies":25,"Changelog: breaking change":20,"Frequency":17,"Pext":17,"v4":16,"Unplanned":13,"Coverage":10,"v4.1":9,"Constraint":9,"Resources":7,"annotation":7,"ga4gh VRS":7,"bug":7,"Variant QC annotation":6,"Variant QC":6,"Sample QC":4,"python":4,"VCF":3,"Release Stats":3,"v5":3,"Sample outlier filter":2,"Relatedness":2},"issue_author_associations_count":{"CONTRIBUTOR":55,"NONE":8,"MEMBER":4},"pull_request_author_associations_count":{"CONTRIBUTOR":362,"NONE":4,"COLLABORATOR":2},"issue_authors":{"matren395":16,"jkgoodrich":10,"mike-w-wilson":8,"ch-kr":7,"nawatts":7,"klaricch":3,"averywpx":2,"KoalaQin":2,"gtiao":2,"LindoNkambule":1,"xsun1229":1,"Jingning-Zhang":1,"PoisonAlien":1,"Ruchit10":1,"smhaider":1,"wjwei-handsome":1,"poneill":1,"mkanai":1,"lfrancioli":1},"pull_request_authors":{"jkgoodrich":129,"KoalaQin":66,"mike-w-wilson":54,"klaricch":52,"dependabot[bot]":22,"ch-kr":15,"matren395":10,"averywpx":7,"theferrit32":6,"konradjk":2,"tpoterba":1,"LindoNkambule":1,"jmarshall":1,"Ruchit10":1,"mkanai":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10127824,"issues_count":31789776,"pull_requests_count":99123033,"authors_count":10713673,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"Epic":1,"Changelog: new feature":1},"past_year_pull_request_labels_count":{"Changelog: new feature":39,"Changelog: ignore":15,"Changelog: breaking change":8,"dependencies":6,"python":4,"Resources":3,"Constraint":3,"Changelog: bug fix":3,"Release Stats":2,"Pext":2,"Sample QC":2},"past_year_issue_author_associations_count":{"CONTRIBUTOR":12,"NONE":1},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":85,"NONE":1},"past_year_issue_authors":{"matren395":10,"KoalaQin":2,"Ruchit10":1},"past_year_pull_request_authors":{"KoalaQin":25,"jkgoodrich":23,"klaricch":20,"ch-kr":7,"mike-w-wilson":4,"dependabot[bot]":4,"matren395":2,"Ruchit10":1},"maintainers":[{"login":"nawatts","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nawatts"},{"login":"konradjk","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/konradjk"}],"active_maintainers":[]},"events":{"total":{"ForkEvent":2,"CreateEvent":44,"CommitCommentEvent":1,"ReleaseEvent":1,"IssuesEvent":25,"WatchEvent":10,"DeleteEvent":40,"IssueCommentEvent":46,"MemberEvent":1,"PushEvent":339,"PullRequestEvent":79,"PullRequestReviewEvent":269,"PullRequestReviewCommentEvent":361},"last_year":{"ForkEvent":2,"CreateEvent":44,"CommitCommentEvent":1,"ReleaseEvent":1,"IssuesEvent":25,"WatchEvent":10,"DeleteEvent":40,"IssueCommentEvent":46,"MemberEvent":1,"PushEvent":339,"PullRequestEvent":79,"PullRequestReviewEvent":269,"PullRequestReviewCommentEvent":361}},"keywords":["exomes","genomes","genomics","hail"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T16:30:35.573Z","updated_at":"2023-02-09T16:30:35.573Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/.github/workflows/ci.yml","dependencies":[{"id":7498489213,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7498489214,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7498489215,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7498489216,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7498489217,"package_name":"actions/cache","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/publish.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T16:30:35.635Z","updated_at":"2023-02-09T16:30:35.635Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/.github/workflows/publish.yml","dependencies":[{"id":7498489484,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7498489485,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7498489486,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7498489487,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"release/v1","direct":true,"kind":"composite","optional":false},{"id":7498489488,"package_name":"actions/github-script","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"docs/requirements.docs.in","sha":null,"kind":"manifest","created_at":"2023-02-09T16:30:35.841Z","updated_at":"2023-02-09T16:30:35.841Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/docs/requirements.docs.in","dependencies":[{"id":7498489752,"package_name":"myst-parser","ecosystem":"pypi","requirements":"==0.14.0","direct":true,"kind":"runtime","optional":false},{"id":7498489753,"package_name":"requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7498489754,"package_name":"Sphinx","ecosystem":"pypi","requirements":"\u003e=2.1,\u003c3","direct":true,"kind":"runtime","optional":false},{"id":7498489755,"package_name":"sphinx-autodoc-typehints","ecosystem":"pypi","requirements":"==1.10.3","direct":true,"kind":"runtime","optional":false},{"id":7498489756,"package_name":"sphinx-rtd-theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"docs/requirements.docs.txt","sha":null,"kind":"lockfile","created_at":"2023-02-09T16:30:35.898Z","updated_at":"2023-02-09T16:30:35.898Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/docs/requirements.docs.txt","dependencies":[{"id":7498490110,"package_name":"alabaster","ecosystem":"pypi","requirements":"==0.7.12","direct":false,"kind":"runtime","optional":false},{"id":7498490111,"package_name":"attrs","ecosystem":"pypi","requirements":"==21.2.0","direct":false,"kind":"runtime","optional":false},{"id":7498490112,"package_name":"babel","ecosystem":"pypi","requirements":"==2.9.1","direct":false,"kind":"runtime","optional":false},{"id":7498490113,"package_name":"certifi","ecosystem":"pypi","requirements":"==2021.10.8","direct":false,"kind":"runtime","optional":false},{"id":7498490114,"package_name":"charset-normalizer","ecosystem":"pypi","requirements":"==2.0.7","direct":false,"kind":"runtime","optional":false},{"id":7498490115,"package_name":"docutils","ecosystem":"pypi","requirements":"==0.17.1","direct":false,"kind":"runtime","optional":false},{"id":7498490116,"package_name":"idna","ecosystem":"pypi","requirements":"==3.3","direct":false,"kind":"runtime","optional":false},{"id":7498490117,"package_name":"imagesize","ecosystem":"pypi","requirements":"==1.2.0","direct":false,"kind":"runtime","optional":false},{"id":7498490118,"package_name":"jinja2","ecosystem":"pypi","requirements":"==3.0.2","direct":false,"kind":"runtime","optional":false},{"id":7498490119,"package_name":"markdown-it-py","ecosystem":"pypi","requirements":"==1.1.0","direct":false,"kind":"runtime","optional":false},{"id":7498490120,"package_name":"markupsafe","ecosystem":"pypi","requirements":"==2.0.1","direct":false,"kind":"runtime","optional":false},{"id":7498490121,"package_name":"mdit-py-plugins","ecosystem":"pypi","requirements":"==0.2.8","direct":false,"kind":"runtime","optional":false},{"id":7498490122,"package_name":"myst-parser","ecosystem":"pypi","requirements":"==0.14.0","direct":false,"kind":"runtime","optional":false},{"id":7498490123,"package_name":"packaging","ecosystem":"pypi","requirements":"==21.0","direct":false,"kind":"runtime","optional":false},{"id":7498490124,"package_name":"pygments","ecosystem":"pypi","requirements":"==2.10.0","direct":false,"kind":"runtime","optional":false},{"id":7498490125,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==3.0.2","direct":false,"kind":"runtime","optional":false},{"id":7498490126,"package_name":"pytz","ecosystem":"pypi","requirements":"==2021.3","direct":false,"kind":"runtime","optional":false},{"id":7498490127,"package_name":"pyyaml","ecosystem":"pypi","requirements":"==6.0","direct":false,"kind":"runtime","optional":false},{"id":7498490128,"package_name":"requests","ecosystem":"pypi","requirements":"==2.26.0","direct":false,"kind":"runtime","optional":false},{"id":7498490129,"package_name":"snowballstemmer","ecosystem":"pypi","requirements":"==2.1.0","direct":false,"kind":"runtime","optional":false},{"id":7498490130,"package_name":"sphinx","ecosystem":"pypi","requirements":"==2.4.4","direct":false,"kind":"runtime","optional":false},{"id":7498490131,"package_name":"sphinx-autodoc-typehints","ecosystem":"pypi","requirements":"==1.10.3","direct":false,"kind":"runtime","optional":false},{"id":7498490132,"package_name":"sphinx-rtd-theme","ecosystem":"pypi","requirements":"==1.0.0","direct":false,"kind":"runtime","optional":false},{"id":7498490133,"package_name":"sphinxcontrib-applehelp","ecosystem":"pypi","requirements":"==1.0.2","direct":false,"kind":"runtime","optional":false},{"id":7498490134,"package_name":"sphinxcontrib-devhelp","ecosystem":"pypi","requirements":"==1.0.2","direct":false,"kind":"runtime","optional":false},{"id":7498490135,"package_name":"sphinxcontrib-htmlhelp","ecosystem":"pypi","requirements":"==2.0.0","direct":false,"kind":"runtime","optional":false},{"id":7498490136,"package_name":"sphinxcontrib-jsmath","ecosystem":"pypi","requirements":"==1.0.1","direct":false,"kind":"runtime","optional":false},{"id":7498490137,"package_name":"sphinxcontrib-qthelp","ecosystem":"pypi","requirements":"==1.0.3","direct":false,"kind":"runtime","optional":false},{"id":7498490138,"package_name":"sphinxcontrib-serializinghtml","ecosystem":"pypi","requirements":"==1.1.5","direct":false,"kind":"runtime","optional":false},{"id":7498490139,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"==3.10.0.2","direct":false,"kind":"runtime","optional":false},{"id":7498490140,"package_name":"urllib3","ecosystem":"pypi","requirements":"==1.26.7","direct":false,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements-dev.in","sha":null,"kind":"manifest","created_at":"2023-02-09T16:30:36.094Z","updated_at":"2023-02-09T16:30:36.094Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/requirements-dev.in","dependencies":[{"id":7498490346,"package_name":"black","ecosystem":"pypi","requirements":"==22.10.0","direct":true,"kind":"development","optional":false},{"id":7498490347,"package_name":"isort","ecosystem":"pypi","requirements":"==5.10.1","direct":true,"kind":"development","optional":false},{"id":7498490348,"package_name":"autopep8","ecosystem":"pypi","requirements":"==1.7.0","direct":true,"kind":"development","optional":false},{"id":7498490349,"package_name":"pre-commit","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":7498490350,"package_name":"pydocstyle","ecosystem":"pypi","requirements":"==6.1.1","direct":true,"kind":"development","optional":false},{"id":7498490351,"package_name":"pylint","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":7498490352,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false}]},{"ecosystem":"pypi","filepath":"requirements-dev.txt","sha":null,"kind":"manifest","created_at":"2023-02-09T16:30:36.165Z","updated_at":"2023-02-09T16:30:36.165Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/requirements-dev.txt","dependencies":[{"id":7498490398,"package_name":"astroid","ecosystem":"pypi","requirements":"==2.9.0","direct":true,"kind":"development","optional":false},{"id":7498490399,"package_name":"attrs","ecosystem":"pypi","requirements":"==21.2.0","direct":true,"kind":"development","optional":false},{"id":7498490400,"package_name":"autopep8","ecosystem":"pypi","requirements":"==1.7.0","direct":true,"kind":"development","optional":false},{"id":7498490401,"package_name":"backports-entry-points-selectable","ecosystem":"pypi","requirements":"==1.1.1","direct":true,"kind":"development","optional":false},{"id":7498490402,"package_name":"black","ecosystem":"pypi","requirements":"==22.10.0","direct":true,"kind":"development","optional":false},{"id":7498490403,"package_name":"cfgv","ecosystem":"pypi","requirements":"==3.3.1","direct":true,"kind":"development","optional":false},{"id":7498490404,"package_name":"click","ecosystem":"pypi","requirements":"==8.0.3","direct":true,"kind":"development","optional":false},{"id":7498490405,"package_name":"distlib","ecosystem":"pypi","requirements":"==0.3.3","direct":true,"kind":"development","optional":false},{"id":7498490406,"package_name":"filelock","ecosystem":"pypi","requirements":"==3.4.0","direct":true,"kind":"development","optional":false},{"id":7498490407,"package_name":"identify","ecosystem":"pypi","requirements":"==2.4.0","direct":true,"kind":"development","optional":false},{"id":7498490408,"package_name":"iniconfig","ecosystem":"pypi","requirements":"==1.1.1","direct":true,"kind":"development","optional":false},{"id":7498490409,"package_name":"isort","ecosystem":"pypi","requirements":"==5.10.1","direct":true,"kind":"development","optional":false},{"id":7498490410,"package_name":"lazy-object-proxy","ecosystem":"pypi","requirements":"==1.6.0","direct":true,"kind":"development","optional":false},{"id":7498490411,"package_name":"mccabe","ecosystem":"pypi","requirements":"==0.6.1","direct":true,"kind":"development","optional":false},{"id":7498490412,"package_name":"mypy-extensions","ecosystem":"pypi","requirements":"==0.4.3","direct":true,"kind":"development","optional":false},{"id":7498490413,"package_name":"nodeenv","ecosystem":"pypi","requirements":"==1.6.0","direct":true,"kind":"development","optional":false},{"id":7498490414,"package_name":"packaging","ecosystem":"pypi","requirements":"==21.3","direct":true,"kind":"development","optional":false},{"id":7498490415,"package_name":"pathspec","ecosystem":"pypi","requirements":"==0.9.0","direct":true,"kind":"development","optional":false},{"id":7498490416,"package_name":"platformdirs","ecosystem":"pypi","requirements":"==2.4.0","direct":true,"kind":"development","optional":false},{"id":7498490417,"package_name":"pluggy","ecosystem":"pypi","requirements":"==1.0.0","direct":true,"kind":"development","optional":false},{"id":7498490418,"package_name":"pre-commit","ecosystem":"pypi","requirements":"==2.15.0","direct":true,"kind":"development","optional":false},{"id":7498490419,"package_name":"py","ecosystem":"pypi","requirements":"==1.11.0","direct":true,"kind":"development","optional":false},{"id":7498490420,"package_name":"pycodestyle","ecosystem":"pypi","requirements":"==2.9.1","direct":true,"kind":"development","optional":false},{"id":7498490421,"package_name":"pydocstyle","ecosystem":"pypi","requirements":"==6.1.1","direct":true,"kind":"development","optional":false},{"id":7498490422,"package_name":"pylint","ecosystem":"pypi","requirements":"==2.12.1","direct":true,"kind":"development","optional":false},{"id":7498490423,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==3.0.6","direct":true,"kind":"development","optional":false},{"id":7498490424,"package_name":"pytest","ecosystem":"pypi","requirements":"==6.2.5","direct":true,"kind":"development","optional":false},{"id":7498490425,"package_name":"pyyaml","ecosystem":"pypi","requirements":"==6.0","direct":true,"kind":"development","optional":false},{"id":7498490426,"package_name":"six","ecosystem":"pypi","requirements":"==1.16.0","direct":true,"kind":"development","optional":false},{"id":7498490427,"package_name":"snowballstemmer","ecosystem":"pypi","requirements":"==2.2.0","direct":true,"kind":"development","optional":false},{"id":7498490428,"package_name":"toml","ecosystem":"pypi","requirements":"==0.10.2","direct":true,"kind":"development","optional":false},{"id":7498490429,"package_name":"tomli","ecosystem":"pypi","requirements":"==2.0.1","direct":true,"kind":"development","optional":false},{"id":7498490430,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"==4.0.0","direct":true,"kind":"development","optional":false},{"id":7498490431,"package_name":"virtualenv","ecosystem":"pypi","requirements":"==20.10.0","direct":true,"kind":"development","optional":false},{"id":7498490432,"package_name":"wrapt","ecosystem":"pypi","requirements":"==1.13.3","direct":true,"kind":"development","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2023-02-09T16:30:36.214Z","updated_at":"2023-02-09T16:30:36.214Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/requirements.txt","dependencies":[{"id":7498490455,"package_name":"annoy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7498490456,"package_name":"hail","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7498490457,"package_name":"hdbscan","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7498490458,"package_name":"ipywidgets","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7498490459,"package_name":"networkx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7498490460,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7498490461,"package_name":"slackclient","ecosystem":"pypi","requirements":"==2.5.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-09-26T17:57:07.588Z","updated_at":"2023-09-26T17:57:07.588Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/pyproject.toml","dependencies":[]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2023-09-26T17:57:07.611Z","updated_at":"2023-09-26T17:57:07.611Z","repository_link":"https://github.com/broadinstitute/gnomad_methods/blob/main/setup.py","dependencies":[]}],"score":19.603484372039297,"created_at":"2025-09-08T11:18:44.574Z","updated_at":"2025-10-07T08:25:16.399Z","avatar_url":"https://github.com/broadinstitute.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":1763,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioinformatics","genetics","gwas","software","vcf","interactive","serializer","packaging","network-simulation","shellcodes"],"project_url":"https://science.ecosyste.ms/api/v1/projects/66866","html_url":"https://science.ecosyste.ms/projects/66866"}