{"id":67048,"name":"conos","description":"R package for the joint analysis of multiple single-cell RNA-seq datasets","url":"https://github.com/kharchenkolab/conos","last_synced_at":"2025-09-08T13:48:58.928Z","repository":{"id":48046996,"uuid":"141833649","full_name":"kharchenkolab/conos","owner":"kharchenkolab","description":"R package for the joint analysis of multiple single-cell RNA-seq datasets","archived":false,"fork":false,"pushed_at":"2024-02-26T21:21:19.000Z","size":281651,"stargazers_count":214,"open_issues_count":9,"forks_count":39,"subscribers_count":11,"default_branch":"main","last_synced_at":"2025-09-07T05:33:02.151Z","etag":null,"topics":["batch-correction","scrna-seq","single-cell-rna-seq"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/kharchenkolab.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-07-21T17:38:52.000Z","updated_at":"2025-08-31T02:19:41.000Z","dependencies_parsed_at":"2022-08-28T09:03:54.713Z","dependency_job_id":null,"html_url":"https://github.com/kharchenkolab/conos","commit_stats":null,"previous_names":[],"tags_count":22,"template":false,"template_full_name":null,"purl":"pkg:github/kharchenkolab/conos","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274026718,"owners_count":25209740,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-07T02:00:09.463Z","response_time":67,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"kharchenkolab","name":"Kharchenko Lab","uuid":"67511277","kind":"organization","description":"","email":null,"website":"http://pklab.org","location":null,"twitter":"KharchenkoLab","company":null,"icon_url":"https://avatars.githubusercontent.com/u/67511277?v=4","repositories_count":21,"last_synced_at":"2023-03-03T19:42:54.504Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/kharchenkolab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T05:06:27.504Z","updated_at":"2023-03-03T19:42:54.521Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab/repositories"},"packages":[{"id":427304,"name":"conos","ecosystem":"cran","description":"Clustering on Network of Samples","homepage":"https://github.com/kharchenkolab/conos","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/kharchenkolab/conos","keywords_array":[],"namespace":null,"versions_count":13,"first_release_published_at":"2021-02-23T10:00:00.000Z","latest_release_published_at":"2024-02-26T00:00:00.000Z","latest_release_number":"1.5.2","last_synced_at":"2025-09-06T11:22:30.984Z","created_at":"2022-04-06T19:27:52.519Z","updated_at":"2025-09-07T19:00:10.918Z","registry_url":"https://cran.r-project.org/package=conos","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/conos/conos.pdf","metadata":{},"repo_metadata":{"id":48046996,"uuid":"141833649","full_name":"kharchenkolab/conos","owner":"kharchenkolab","description":"R package for the joint analysis of multiple single-cell RNA-seq datasets","archived":false,"fork":false,"pushed_at":"2024-02-26T21:21:19.000Z","size":281651,"stargazers_count":214,"open_issues_count":9,"forks_count":39,"subscribers_count":11,"default_branch":"main","last_synced_at":"2025-09-07T05:33:02.151Z","etag":null,"topics":["batch-correction","scrna-seq","single-cell-rna-seq"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/kharchenkolab.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-07-21T17:38:52.000Z","updated_at":"2025-08-31T02:19:41.000Z","dependencies_parsed_at":"2022-08-28T09:03:54.713Z","dependency_job_id":null,"html_url":"https://github.com/kharchenkolab/conos","commit_stats":null,"previous_names":[],"tags_count":22,"template":false,"template_full_name":null,"purl":"pkg:github/kharchenkolab/conos","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274026718,"owners_count":25209740,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-07T02:00:09.463Z","response_time":67,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"kharchenkolab","name":"Kharchenko Lab","uuid":"67511277","kind":"organization","description":"","email":null,"website":"http://pklab.org","location":null,"twitter":"KharchenkoLab","company":null,"icon_url":"https://avatars.githubusercontent.com/u/67511277?v=4","repositories_count":21,"last_synced_at":"2023-03-03T19:42:54.504Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/kharchenkolab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T05:06:27.504Z","updated_at":"2023-03-03T19:42:54.521Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab/repositories"},"tags":[{"name":"v1.5.0","sha":"7cc672984bbdf6beb71d7b74bc13070fc955c2e2","kind":"commit","published_at":"2022-10-20T00:04:49.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.5.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.5.0/manifests"},{"name":"v1.4.9","sha":"82de2af7b787925093e44883d12d6169d497a3e7","kind":"commit","published_at":"2022-09-30T04:14:52.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.9","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.9/manifests"},{"name":"v1.4.8","sha":"fb8114499c13edfb77cb46b88351c528f280c2cc","kind":"commit","published_at":"2022-09-26T00:18:13.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.8","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.8/manifests"},{"name":"v1.4.7","sha":"61d0004946afac3948b3b4d53b0ef597a0b04635","kind":"commit","published_at":"2022-09-04T04:23:00.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.7","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.7/manifests"},{"name":"v1.4.6","sha":"c3c1a941548e3bca1f4731f18b2abe16d126cdf3","kind":"commit","published_at":"2022-04-01T03:55:07.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.6","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.6/manifests"},{"name":"v1.4.5","sha":"901fdd74a660ef185c792e1f2794c0248070c1bf","kind":"commit","published_at":"2022-01-21T14:02:59.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.5","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.5/manifests"},{"name":"v1.4.4","sha":"e0c0c37141780b41bd755e50ae17a1512c447b21","kind":"commit","published_at":"2021-11-08T22:48:57.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.4","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.4/manifests"},{"name":"v1.4.3","sha":"e96ca04d822767aa3a7d338dc4ed7a7b8e886433","kind":"commit","published_at":"2021-08-07T23:27:48.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.3","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.3/manifests"},{"name":"v1.4.2","sha":"ec4502e8783541fc23a61062aca0f5322a3fb154","kind":"commit","published_at":"2021-06-28T22:17:12.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.2","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.2/manifests"},{"name":"v1.4.1","sha":"df04aa7147e7d86cf17094ff664be6ea80f72376","kind":"commit","published_at":"2021-05-16T00:17:01.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.1/manifests"},{"name":"v1.4.0","sha":"442a5611da2709d848283a3ecde8062088fa8273","kind":"commit","published_at":"2021-02-23T12:46:46.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.0/manifests"},{"name":"v1.3.1","sha":"8af26431678064798b0548744f08c1a9ceec1b0a","kind":"commit","published_at":"2020-09-24T18:55:52.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.3.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.3.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.3.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.1/manifests"},{"name":"v1.3.0-1","sha":"7e3c4b170ae81179519880ad0c67bb026e936372","kind":"commit","published_at":"2020-05-10T13:03:32.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.3.0-1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.3.0-1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.3.0-1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0-1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0-1/manifests"},{"name":"v1.3.0","sha":"c5415a33f6f5c2184936561da35bd911daf91c13","kind":"commit","published_at":"2020-03-20T03:36:10.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.3.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0/manifests"},{"name":"v1.2.1","sha":"afabb629c4e2c9a25e62f3cb653887facb9989bf","kind":"commit","published_at":"2019-12-04T11:20:57.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.2.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.1/manifests"},{"name":"v1.1.2","sha":"c306a00b96e1306ede928df61ca42c9c28d0fa4e","kind":"tag","published_at":"2019-11-28T11:35:38.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.1.2","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.2/manifests"},{"name":"v1.2.0","sha":"ef063fa4cb1d04d33c63d7cf866dbcfbff72f42f","kind":"commit","published_at":"2019-11-27T12:53:41.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.2.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.0/manifests"},{"name":"v1.1.1","sha":"7d794f65e84bae2c90a3d98043bba2c33c677bbe","kind":"tag","published_at":"2019-07-15T08:04:50.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.1.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.1/manifests"},{"name":"v1.1.0","sha":"f196dc92f3e1c91c84895ac62e9fe9d83f663394","kind":"tag","published_at":"2019-07-10T09:35:22.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.1.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.0/manifests"},{"name":"v1.0.3","sha":"95c33d7120b7f330195cc7ee4927881976517cbf","kind":"tag","published_at":"2019-07-02T21:58:47.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.0.3","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.0.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.0.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.3/manifests"},{"name":"v1.0.1","sha":"b816bd7220420235f60c7d9a3b31f2dff61e0ac1","kind":"tag","published_at":"2019-05-01T20:35:25.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.0.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"7851b5d7ee949f4f6ba768684f43a91e864e7238","kind":"tag","published_at":"2019-04-18T01:46:47.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.0.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.0/manifests"}]},"repo_metadata_updated_at":"2025-09-07T19:00:10.918Z","dependent_packages_count":2,"downloads":398,"downloads_period":"last-month","dependent_repos_count":8,"rankings":{"downloads":19.799599198396795,"dependent_repos_count":10.478735248274326,"dependent_packages_count":13.676241371632154,"stargazers_count":2.404809619238477,"forks_count":2.115341794700512,"docker_downloads_count":17.461589846359384,"average":10.98938617976694},"purl":"pkg:cran/conos","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/conos","docker_dependents_count":4,"docker_downloads_count":147,"usage_url":"https://repos.ecosyste.ms/usage/cran/conos","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/conos/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-02T08:37:00.671Z","issues_count":71,"pull_requests_count":34,"avg_time_to_close_issue":10551675.015873017,"avg_time_to_close_pull_request":976487.9696969697,"issues_closed_count":63,"pull_requests_closed_count":33,"pull_request_authors_count":5,"issue_authors_count":41,"avg_comments_per_issue":4.112676056338028,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":30,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":1482965.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":3.5,"past_year_avg_comments_per_pull_request":5.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/issues","maintainers":[{"login":"evanbiederstedt","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/evanbiederstedt"},{"login":"pkharchenko","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pkharchenko"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/conos/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/conos/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/conos/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/conos/related_packages","maintainers":[{"uuid":"evan.biederstedt@gmail.com","login":null,"name":"Evan Biederstedt","email":"evan.biederstedt@gmail.com","url":null,"packages_count":12,"html_url":null,"role":null,"created_at":"2022-11-14T17:16:15.837Z","updated_at":"2022-11-14T17:16:15.837Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/evan.biederstedt@gmail.com/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}},{"id":11676979,"name":"github.com/kharchenkolab/conos","ecosystem":"go","description":null,"homepage":null,"licenses":"gpl-3.0","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/kharchenkolab/conos","keywords_array":[],"namespace":null,"versions_count":24,"first_release_published_at":"2019-04-18T01:44:57.000Z","latest_release_published_at":"2024-02-26T21:19:56.000Z","latest_release_number":"v1.5.2","last_synced_at":"2025-09-07T05:39:25.175Z","created_at":"2025-05-23T10:08:18.794Z","updated_at":"2025-09-07T19:00:11.186Z","registry_url":"https://pkg.go.dev/github.com/kharchenkolab/conos","install_command":"go get github.com/kharchenkolab/conos","documentation_url":"https://pkg.go.dev/github.com/kharchenkolab/conos#section-documentation","metadata":{},"repo_metadata":{"id":48046996,"uuid":"141833649","full_name":"kharchenkolab/conos","owner":"kharchenkolab","description":"R package for the joint analysis of multiple single-cell RNA-seq datasets","archived":false,"fork":false,"pushed_at":"2024-02-26T21:21:19.000Z","size":281651,"stargazers_count":214,"open_issues_count":9,"forks_count":39,"subscribers_count":11,"default_branch":"main","last_synced_at":"2025-09-07T05:33:02.151Z","etag":null,"topics":["batch-correction","scrna-seq","single-cell-rna-seq"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/kharchenkolab.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-07-21T17:38:52.000Z","updated_at":"2025-08-31T02:19:41.000Z","dependencies_parsed_at":"2022-08-28T09:03:54.713Z","dependency_job_id":null,"html_url":"https://github.com/kharchenkolab/conos","commit_stats":null,"previous_names":[],"tags_count":22,"template":false,"template_full_name":null,"purl":"pkg:github/kharchenkolab/conos","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274026718,"owners_count":25209740,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-07T02:00:09.463Z","response_time":67,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"kharchenkolab","name":"Kharchenko Lab","uuid":"67511277","kind":"organization","description":"","email":null,"website":"http://pklab.org","location":null,"twitter":"KharchenkoLab","company":null,"icon_url":"https://avatars.githubusercontent.com/u/67511277?v=4","repositories_count":21,"last_synced_at":"2023-03-03T19:42:54.504Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/kharchenkolab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T05:06:27.504Z","updated_at":"2023-03-03T19:42:54.521Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kharchenkolab/repositories"},"tags":[{"name":"v1.5.0","sha":"7cc672984bbdf6beb71d7b74bc13070fc955c2e2","kind":"commit","published_at":"2022-10-20T00:04:49.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.5.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.5.0/manifests"},{"name":"v1.4.9","sha":"82de2af7b787925093e44883d12d6169d497a3e7","kind":"commit","published_at":"2022-09-30T04:14:52.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.9","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.9/manifests"},{"name":"v1.4.8","sha":"fb8114499c13edfb77cb46b88351c528f280c2cc","kind":"commit","published_at":"2022-09-26T00:18:13.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.8","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.8/manifests"},{"name":"v1.4.7","sha":"61d0004946afac3948b3b4d53b0ef597a0b04635","kind":"commit","published_at":"2022-09-04T04:23:00.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.7","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.7/manifests"},{"name":"v1.4.6","sha":"c3c1a941548e3bca1f4731f18b2abe16d126cdf3","kind":"commit","published_at":"2022-04-01T03:55:07.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.6","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.6/manifests"},{"name":"v1.4.5","sha":"901fdd74a660ef185c792e1f2794c0248070c1bf","kind":"commit","published_at":"2022-01-21T14:02:59.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.5","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.5/manifests"},{"name":"v1.4.4","sha":"e0c0c37141780b41bd755e50ae17a1512c447b21","kind":"commit","published_at":"2021-11-08T22:48:57.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.4","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.4/manifests"},{"name":"v1.4.3","sha":"e96ca04d822767aa3a7d338dc4ed7a7b8e886433","kind":"commit","published_at":"2021-08-07T23:27:48.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.3","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.3/manifests"},{"name":"v1.4.2","sha":"ec4502e8783541fc23a61062aca0f5322a3fb154","kind":"commit","published_at":"2021-06-28T22:17:12.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.2","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.2/manifests"},{"name":"v1.4.1","sha":"df04aa7147e7d86cf17094ff664be6ea80f72376","kind":"commit","published_at":"2021-05-16T00:17:01.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.1/manifests"},{"name":"v1.4.0","sha":"442a5611da2709d848283a3ecde8062088fa8273","kind":"commit","published_at":"2021-02-23T12:46:46.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.4.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.4.0/manifests"},{"name":"v1.3.1","sha":"8af26431678064798b0548744f08c1a9ceec1b0a","kind":"commit","published_at":"2020-09-24T18:55:52.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.3.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.3.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.3.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.1/manifests"},{"name":"v1.3.0-1","sha":"7e3c4b170ae81179519880ad0c67bb026e936372","kind":"commit","published_at":"2020-05-10T13:03:32.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.3.0-1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.3.0-1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.3.0-1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0-1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0-1/manifests"},{"name":"v1.3.0","sha":"c5415a33f6f5c2184936561da35bd911daf91c13","kind":"commit","published_at":"2020-03-20T03:36:10.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.3.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.3.0/manifests"},{"name":"v1.2.1","sha":"afabb629c4e2c9a25e62f3cb653887facb9989bf","kind":"commit","published_at":"2019-12-04T11:20:57.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.2.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.1/manifests"},{"name":"v1.1.2","sha":"c306a00b96e1306ede928df61ca42c9c28d0fa4e","kind":"tag","published_at":"2019-11-28T11:35:38.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.1.2","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.2/manifests"},{"name":"v1.2.0","sha":"ef063fa4cb1d04d33c63d7cf866dbcfbff72f42f","kind":"commit","published_at":"2019-11-27T12:53:41.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.2.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.2.0/manifests"},{"name":"v1.1.1","sha":"7d794f65e84bae2c90a3d98043bba2c33c677bbe","kind":"tag","published_at":"2019-07-15T08:04:50.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.1.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.1/manifests"},{"name":"v1.1.0","sha":"f196dc92f3e1c91c84895ac62e9fe9d83f663394","kind":"tag","published_at":"2019-07-10T09:35:22.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.1.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.1.0/manifests"},{"name":"v1.0.3","sha":"95c33d7120b7f330195cc7ee4927881976517cbf","kind":"tag","published_at":"2019-07-02T21:58:47.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.0.3","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.0.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.0.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.3/manifests"},{"name":"v1.0.1","sha":"b816bd7220420235f60c7d9a3b31f2dff61e0ac1","kind":"tag","published_at":"2019-05-01T20:35:25.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.0.1","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"7851b5d7ee949f4f6ba768684f43a91e864e7238","kind":"tag","published_at":"2019-04-18T01:46:47.000Z","download_url":"https://codeload.github.com/kharchenkolab/conos/tar.gz/v1.0.0","html_url":"https://github.com/kharchenkolab/conos/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/kharchenkolab/conos@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/tags/v1.0.0/manifests"}]},"repo_metadata_updated_at":"2025-09-07T19:00:11.186Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":5.825186304275193,"dependent_packages_count":5.4589533387888975,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.642069821532045},"purl":"pkg:golang/github.com/kharchenkolab/conos","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/kharchenkolab/conos","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/kharchenkolab/conos","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/kharchenkolab/conos/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-02T08:37:00.671Z","issues_count":71,"pull_requests_count":34,"avg_time_to_close_issue":10551675.015873017,"avg_time_to_close_pull_request":976487.9696969697,"issues_closed_count":63,"pull_requests_closed_count":33,"pull_request_authors_count":5,"issue_authors_count":41,"avg_comments_per_issue":4.112676056338028,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":30,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":1482965.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":3.5,"past_year_avg_comments_per_pull_request":5.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/issues","maintainers":[{"login":"evanbiederstedt","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/evanbiederstedt"},{"login":"pkharchenko","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pkharchenko"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkharchenkolab%2Fconos/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkharchenkolab%2Fconos/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkharchenkolab%2Fconos/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkharchenkolab%2Fconos/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1954233,"maintainers_count":0,"namespaces_count":741771,"keywords_count":109320,"github":"golang","metadata":{"funded_packages_count":49342},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-08T05:47:38.872Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}}],"commits":{"id":720962,"full_name":"kharchenkolab/conos","default_branch":"main","committers":[{"name":"evanbiederstedt","email":"evan.biederstedt@gmail.com","login":null,"count":357},{"name":"viktor_petukhov","email":"viktor.s.petuhov@ya.ru","login":null,"count":201},{"name":"Peter Kharchenko","email":"peter.kharchenko@gmail.com","login":null,"count":145},{"name":"Nikolas Barkas","email":"Nikolas.barkas@outlook.com","login":null,"count":78},{"name":"evanbiederstedt","email":"evanbiederstedt","login":"evanbiederstedt","count":45},{"name":"yarloz","email":"lozinsky.yaroslav@gmail.com","login":null,"count":43},{"name":"Nikolas Barkas","email":"Nikolaos_Barkas@hms.harvard.edu","login":null,"count":24},{"name":"GMaciag","email":"papagregorgio@gmail.com","login":null,"count":23},{"name":"Nikolas Barkas","email":"nikolas.barkas@outlook.com","login":null,"count":21},{"name":"Paul Hoffman","email":"mojaveazure","login":"mojaveazure","count":13},{"name":"RRydbirk","email":"rasmus.rydbirk@bric.ku.dk","login":null,"count":3},{"name":"pkharchenko","email":"peterk.kharchenko@gmail.com","login":null,"count":3},{"name":"Darío Hereñú","email":"magallania@gmail.com","login":"kant","count":2},{"name":"Nikolas Barkas","email":"barkasn@Nikolass-MacBook-Pro.local","login":null,"count":1},{"name":"Grzegorz Maciag","email":"31366577+GMaciag","login":"GMaciag","count":1}],"total_commits":960,"total_committers":15,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":64.0,"dds":0.628125,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:31:01.390Z","last_synced_commit":"7cc672984bbdf6beb71d7b74bc13070fc955c2e2","created_at":"2023-03-09T13:03:46.633Z","updated_at":"2023-10-25T13:31:01.391Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5484000,"commits_count":854343132,"contributors_count":31144857,"owners_count":908866,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"kharchenkolab/conos","html_url":"https://github.com/kharchenkolab/conos","last_synced_at":"2025-08-02T08:37:00.671Z","status":"error","issues_count":71,"pull_requests_count":34,"avg_time_to_close_issue":10551675.015873017,"avg_time_to_close_pull_request":976487.9696969697,"issues_closed_count":63,"pull_requests_closed_count":33,"pull_request_authors_count":5,"issue_authors_count":41,"avg_comments_per_issue":4.112676056338028,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":30,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":1482965.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":3.5,"past_year_avg_comments_per_pull_request":5.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-10T22:22:28.745Z","updated_at":"2025-09-02T14:04:01.427Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fconos/issues","issue_labels_count":{"help wanted":10,"enhancement":6,"bug":2,"refactor":1,"question":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":56,"CONTRIBUTOR":14,"COLLABORATOR":1},"pull_request_author_associations_count":{"COLLABORATOR":29,"NONE":3,"CONTRIBUTOR":3},"issue_authors":{"VPetukhov":12,"rrydbirk":5,"ACastanza":5,"hiraksarkar":3,"tanasa":3,"Dimmiso":3,"akramdi":2,"GMaciag":2,"FFriis":2,"mckoch234":2,"bony45":2,"auberginekenobi":1,"tedtoal":1,"sroyyors":1,"SaskiaFreytag":1,"epiBioCore":1,"meipingchang":1,"KrGurashi":1,"carbycrab":1,"Lukadon77":1,"lijiang825":1,"Vivianstats":1,"saketkc":1,"mthimma":1,"Laura19993":1,"liuyang218622":1,"josegarciamanteiga":1,"JenniferWUSTL":1,"Kevis9":1,"ccshao":1,"hayfre":1,"EugeneEA":1,"LucaMannino":1,"pkharchenko":1,"connorhknight":1,"aliibarry":1,"lazappi":1,"imranfanaswala":1,"mea2712":1,"yasodha30":1,"honghh2018":1},"pull_request_authors":{"evanbiederstedt":29,"shivangsharma":2,"GMaciag":2,"rrydbirk":1,"kant":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10054150,"issues_count":30900719,"pull_requests_count":92695808,"authors_count":10570509,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"NONE":2},"past_year_issue_authors":{},"past_year_pull_request_authors":{"shivangsharma":2},"maintainers":[{"login":"evanbiederstedt","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/evanbiederstedt"},{"login":"pkharchenko","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pkharchenko"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":22,"IssueCommentEvent":4,"PullRequestEvent":1,"ForkEvent":2},"last_year":{"WatchEvent":22,"IssueCommentEvent":4,"PullRequestEvent":1,"ForkEvent":2}},"keywords":["batch-correction","scrna-seq","single-cell-rna-seq"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-28T09:03:54.599Z","updated_at":"2022-08-28T09:03:54.599Z","repository_link":"https://github.com/kharchenkolab/conos/blob/main/DESCRIPTION","dependencies":[{"id":3026400566,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.5.0","direct":true,"kind":"depends","optional":false},{"id":3026400567,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":3026400568,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":3026400569,"package_name":"abind","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400570,"package_name":"cowplot","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400571,"package_name":"ComplexHeatmap","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400572,"package_name":"dendextend","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400573,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400574,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400575,"package_name":"ggrepel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400576,"package_name":"gridExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400577,"package_name":"irlba","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400578,"package_name":"leidenAlg","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400579,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400580,"package_name":"Matrix.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400581,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400582,"package_name":"N2R","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400583,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400584,"package_name":"R6","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400585,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400586,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400587,"package_name":"Rtsne","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400588,"package_name":"sccore","ecosystem":"cran","requirements":"\u003e= 1.0.0","direct":true,"kind":"imports","optional":false},{"id":3026400589,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400590,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400591,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3026400592,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400593,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400594,"package_name":"conosPanel","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400595,"package_name":"drat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400596,"package_name":"DESeq2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400597,"package_name":"entropy","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400598,"package_name":"ggrastr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400599,"package_name":"GO.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400600,"package_name":"jsonlite","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400601,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400602,"package_name":"org.Hs.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400603,"package_name":"org.Mm.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400604,"package_name":"p2data","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400605,"package_name":"pagoda2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400606,"package_name":"PMA","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400607,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400608,"package_name":"rhdf5","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400609,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400610,"package_name":"rmumps","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400611,"package_name":"Seurat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400612,"package_name":"shinycssloaders","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400613,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400614,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400615,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400616,"package_name":"uwot","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3026400617,"package_name":"zoo","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":14.443158756291524,"created_at":"2025-09-08T11:18:45.439Z","updated_at":"2025-10-07T08:25:18.881Z","avatar_url":"https://github.com/kharchenkolab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":398,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1038/s41592-019-0466-z"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["single-cell","transcriptomics"],"project_url":"https://science.ecosyste.ms/api/v1/projects/67048","html_url":"https://science.ecosyste.ms/projects/67048"}