{"id":67436,"name":"amdock","description":"(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina","url":"https://github.com/valdes-tresanco-ms/amdock","last_synced_at":"2025-09-08T13:54:58.741Z","repository":{"id":45193806,"uuid":"122225589","full_name":"Valdes-Tresanco-MS/AMDock","owner":"Valdes-Tresanco-MS","description":"(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina","archived":false,"fork":false,"pushed_at":"2023-08-03T15:27:14.000Z","size":20803,"stargazers_count":70,"open_issues_count":12,"forks_count":19,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-08-28T14:52:26.217Z","etag":null,"topics":["amdock","autodock","autodock4zn","docking","pymol","scoring","vina"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Valdes-Tresanco-MS.png","metadata":{"files":{"readme":"README.md","changelog":"Change_History.md","contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-02-20T16:41:39.000Z","updated_at":"2025-07-18T06:24:53.000Z","dependencies_parsed_at":"2022-08-28T10:20:24.600Z","dependency_job_id":"ee91f5ed-baca-4685-b97d-c1c4e34a3efb","html_url":"https://github.com/Valdes-Tresanco-MS/AMDock","commit_stats":{"total_commits":300,"total_committers":4,"mean_commits":75.0,"dds":0.08666666666666667,"last_synced_commit":"9a0c2acd982ab7445962c97183fdfc0f2b2d8163"},"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/Valdes-Tresanco-MS/AMDock","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Valdes-Tresanco-MS","download_url":"https://codeload.github.com/Valdes-Tresanco-MS/AMDock/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/sbom","scorecard":{"id":147018,"data":{"date":"2025-08-11","repo":{"name":"github.com/Valdes-Tresanco-MS/AMDock","commit":"2fb6726e467063a8d21d80e7a0eb6fe9e6989ea4"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3,"checks":[{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 0/26 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":4,"reason":"binaries present in source code","details":["Warn: binary detected: AMDock/data/autodock4:1","Warn: binary detected: AMDock/data/autodock4_mac:1","Warn: binary detected: AMDock/data/autogrid4:1","Warn: binary detected: AMDock/data/autogrid4_mac:1","Warn: binary detected: AMDock/data/vina:1","Warn: binary detected: AMDock/data/vina_mac:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/python-publish.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":2,"reason":"dependency not pinned by hash detected -- score normalized to 2","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/python-publish.yml:21: update your workflow using https://app.stepsecurity.io/secureworkflow/Valdes-Tresanco-MS/AMDock/python-publish.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/python-publish.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/Valdes-Tresanco-MS/AMDock/python-publish.yml/master?enable=pin","Warn: pipCommand not pinned by hash: .github/workflows/python-publish.yml:28","Warn: pipCommand not pinned by hash: .github/workflows/python-publish.yml:29","Info:   0 out of   2 GitHub-owned GitHubAction dependencies pinned","Info:   1 out of   1 third-party GitHubAction dependencies pinned","Info:   0 out of   2 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 5 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-16T09:35:27.637Z","repository_id":45193806,"created_at":"2025-08-16T09:35:27.638Z","updated_at":"2025-08-16T09:35:27.638Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274196149,"owners_count":25239148,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Valdes-Tresanco-MS","name":"Mario Sergio Valdés Tresanco","uuid":"36672242","kind":"user","description":"P.h.D. in Modeling and Scientific Computing","email":"","website":null,"location":"Colombia","twitter":null,"company":"University of Medellín ","icon_url":"https://avatars.githubusercontent.com/u/36672242?u=eabb08f6f40ea7840f86955d3281bda3e03b069d\u0026v=4","repositories_count":19,"last_synced_at":"2025-09-02T04:27:30.904Z","metadata":{"has_sponsors_listing":true},"html_url":"https://github.com/Valdes-Tresanco-MS","funding_links":["https://github.com/sponsors/Valdes-Tresanco-MS"],"total_stars":382,"followers":160,"following":1,"created_at":"2022-11-15T17:16:24.597Z","updated_at":"2025-09-02T04:27:30.904Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Valdes-Tresanco-MS","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Valdes-Tresanco-MS/repositories"},"packages":[{"id":2638645,"name":"amdock","ecosystem":"pypi","description":"AMDock: Assisted Molecular Docking with Autodock4 and Autodock Vina","homepage":"https://github.com/Valdes-Tresanco-MS/AMDock","licenses":"GPLv3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/Valdes-Tresanco-MS/AMDock","keywords_array":["AMDock","AutoDock Vina","AutoDock4","AutoDock4Zn","Docking"],"namespace":null,"versions_count":2,"first_release_published_at":"2022-01-02T03:02:25.000Z","latest_release_published_at":"2022-01-03T17:40:14.000Z","latest_release_number":"1.6.2","last_synced_at":"2025-08-28T08:35:35.644Z","created_at":"2022-04-10T10:01:26.810Z","updated_at":"2025-08-28T20:39:49.849Z","registry_url":"https://pypi.org/project/amdock/","install_command":"pip install amdock --index-url https://pypi.org/simple","documentation_url":"https://amdock.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":[],"normalized_name":"amdock","project_status":null},"repo_metadata":{"id":45193806,"uuid":"122225589","full_name":"Valdes-Tresanco-MS/AMDock","owner":"Valdes-Tresanco-MS","description":"(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina","archived":false,"fork":false,"pushed_at":"2023-08-03T15:27:14.000Z","size":20803,"stargazers_count":70,"open_issues_count":12,"forks_count":19,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-08-28T14:52:26.217Z","etag":null,"topics":["amdock","autodock","autodock4zn","docking","pymol","scoring","vina"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Valdes-Tresanco-MS.png","metadata":{"files":{"readme":"README.md","changelog":"Change_History.md","contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-02-20T16:41:39.000Z","updated_at":"2025-07-18T06:24:53.000Z","dependencies_parsed_at":"2022-08-28T10:20:24.600Z","dependency_job_id":"ee91f5ed-baca-4685-b97d-c1c4e34a3efb","html_url":"https://github.com/Valdes-Tresanco-MS/AMDock","commit_stats":{"total_commits":300,"total_committers":4,"mean_commits":75.0,"dds":0.08666666666666667,"last_synced_commit":"9a0c2acd982ab7445962c97183fdfc0f2b2d8163"},"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/Valdes-Tresanco-MS/AMDock","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Valdes-Tresanco-MS","download_url":"https://codeload.github.com/Valdes-Tresanco-MS/AMDock/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/sbom","scorecard":{"id":147018,"data":{"date":"2025-08-11","repo":{"name":"github.com/Valdes-Tresanco-MS/AMDock","commit":"2fb6726e467063a8d21d80e7a0eb6fe9e6989ea4"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3,"checks":[{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 0/26 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":4,"reason":"binaries present in source code","details":["Warn: binary detected: AMDock/data/autodock4:1","Warn: binary detected: AMDock/data/autodock4_mac:1","Warn: binary detected: AMDock/data/autogrid4:1","Warn: binary detected: AMDock/data/autogrid4_mac:1","Warn: binary detected: AMDock/data/vina:1","Warn: binary detected: AMDock/data/vina_mac:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/python-publish.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":2,"reason":"dependency not pinned by hash detected -- score normalized to 2","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/python-publish.yml:21: update your workflow using https://app.stepsecurity.io/secureworkflow/Valdes-Tresanco-MS/AMDock/python-publish.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/python-publish.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/Valdes-Tresanco-MS/AMDock/python-publish.yml/master?enable=pin","Warn: pipCommand not pinned by hash: .github/workflows/python-publish.yml:28","Warn: pipCommand not pinned by hash: .github/workflows/python-publish.yml:29","Info:   0 out of   2 GitHub-owned GitHubAction dependencies pinned","Info:   1 out of   1 third-party GitHubAction dependencies pinned","Info:   0 out of   2 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 5 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-16T09:35:27.637Z","repository_id":45193806,"created_at":"2025-08-16T09:35:27.638Z","updated_at":"2025-08-16T09:35:27.638Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272550392,"owners_count":24953719,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-28T02:00:10.768Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"Valdes-Tresanco-MS","name":"Mario Sergio Valdés Tresanco","uuid":"36672242","kind":"user","description":"P.h.D. in Modeling and Scientific Computing","email":"","website":null,"location":"Colombia","twitter":null,"company":"University of Medellín ","icon_url":"https://avatars.githubusercontent.com/u/36672242?u=eabb08f6f40ea7840f86955d3281bda3e03b069d\u0026v=4","repositories_count":19,"last_synced_at":"2025-08-25T22:46:35.826Z","metadata":{"has_sponsors_listing":true},"html_url":"https://github.com/Valdes-Tresanco-MS","funding_links":["https://github.com/sponsors/Valdes-Tresanco-MS"],"total_stars":382,"followers":160,"following":1,"created_at":"2022-11-15T17:16:24.597Z","updated_at":"2025-08-25T22:46:35.827Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Valdes-Tresanco-MS","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Valdes-Tresanco-MS/repositories"},"tags":[{"name":"1.6.2","sha":"649171da9dd98985f68cf82d8b3fe11543dfbc00","kind":"commit","published_at":"2022-01-02T23:02:01.000Z","download_url":"https://codeload.github.com/Valdes-Tresanco-MS/AMDock/tar.gz/1.6.2","html_url":"https://github.com/Valdes-Tresanco-MS/AMDock/releases/tag/1.6.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Valdes-Tresanco-MS/AMDock@1.6.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags/1.6.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags/1.6.2/manifests"},{"name":"1.6.1","sha":"a6cc7ef9be6309390e139649a0ddc3fa18bb7b6d","kind":"commit","published_at":"2022-01-02T03:00:30.000Z","download_url":"https://codeload.github.com/Valdes-Tresanco-MS/AMDock/tar.gz/1.6.1","html_url":"https://github.com/Valdes-Tresanco-MS/AMDock/releases/tag/1.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Valdes-Tresanco-MS/AMDock@1.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags/1.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags/1.6.1/manifests"},{"name":"v1.5.2","sha":"5a846f0250754580ce48a1c96b137910d2b89f77","kind":"commit","published_at":"2021-05-18T20:15:17.000Z","download_url":"https://codeload.github.com/Valdes-Tresanco-MS/AMDock/tar.gz/v1.5.2","html_url":"https://github.com/Valdes-Tresanco-MS/AMDock/releases/tag/v1.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Valdes-Tresanco-MS/AMDock@v1.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags/v1.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/tags/v1.5.2/manifests"}]},"repo_metadata_updated_at":"2025-08-28T20:39:49.849Z","dependent_packages_count":0,"downloads":91,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":22.124310301286418,"dependent_repos_count":21.66152068531463,"dependent_packages_count":10.032368031403879,"stargazers_count":9.517560137588529,"forks_count":9.324862793709457,"docker_downloads_count":null,"average":14.53212438986058},"purl":"pkg:pypi/amdock","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/amdock","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/amdock","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/amdock/dependencies","status":null,"funding_links":["https://github.com/sponsors/Valdes-Tresanco-MS"],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-28T09:24:19.982Z","issues_count":28,"pull_requests_count":5,"avg_time_to_close_issue":17659504.875,"avg_time_to_close_pull_request":66.6,"issues_closed_count":16,"pull_requests_closed_count":5,"pull_request_authors_count":1,"issue_authors_count":22,"avg_comments_per_issue":2.3214285714285716,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":5,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/issues","maintainers":[{"login":"Valdes-Tresanco-MS","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Valdes-Tresanco-MS"},{"login":"marioernestovaldes","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/marioernestovaldes"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/amdock/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/amdock/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/amdock/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/amdock/related_packages","maintainers":[{"uuid":"Valdes-Tresanco-MS","login":"Valdes-Tresanco-MS","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/Valdes-Tresanco-MS/","role":null,"created_at":"2023-02-23T15:46:34.862Z","updated_at":"2023-02-23T15:46:34.862Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/Valdes-Tresanco-MS/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726150,"maintainers_count":308801,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":534063,"full_name":"Valdes-Tresanco-MS/AMDock","default_branch":"master","committers":[{"name":"Mario Sergio Valdés Tresanco","email":"mariosergiovaldes145@gmail.com","login":null,"count":275},{"name":"Valdes-Tresanco-MS","email":"36672242+Valdes-Tresanco-MS","login":"Valdes-Tresanco-MS","count":20},{"name":"Mario E. Valdes-Tresanco","email":"46581661+marioernestovaldes","login":"marioernestovaldes","count":4},{"name":"mario","email":"mario.valdeztresanco.ucalgary.ca","login":null,"count":2}],"total_commits":301,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":75.25,"dds":0.08637873754152825,"past_year_committers":[{"name":"Mario S. Valdés","email":"mariosergiovaldes145@gmail.com","login":null,"count":1}],"past_year_total_commits":1,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":1.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:51:40.062Z","last_synced_commit":"2fb6726e467063a8d21d80e7a0eb6fe9e6989ea4","created_at":"2023-03-09T03:55:19.789Z","updated_at":"2023-10-25T13:51:40.063Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5484000,"commits_count":854343132,"contributors_count":31144857,"owners_count":908866,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Valdes-Tresanco-MS/AMDock","html_url":"https://github.com/Valdes-Tresanco-MS/AMDock","last_synced_at":"2025-08-28T09:24:19.982Z","status":"error","issues_count":28,"pull_requests_count":5,"avg_time_to_close_issue":17659504.875,"avg_time_to_close_pull_request":66.6,"issues_closed_count":16,"pull_requests_closed_count":5,"pull_request_authors_count":1,"issue_authors_count":22,"avg_comments_per_issue":2.3214285714285716,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":5,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T08:51:34.628Z","updated_at":"2025-09-03T05:02:27.209Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Valdes-Tresanco-MS%2FAMDock/issues","issue_labels_count":{"bug":4,"enhancement":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":23,"OWNER":3,"COLLABORATOR":2},"pull_request_author_associations_count":{"OWNER":5},"issue_authors":{"Valdes-Tresanco-MS":3,"houdini69":2,"debanjansen48":2,"truatpasteurdotfr":2,"marioernestovaldes":2,"Narsil-A":1,"about0blank":1,"seal28":1,"hima111997":1,"avinashkarkada":1,"jhh1492":1,"drbenedictpaul":1,"Ramstein":1,"Oxeda":1,"galeo":1,"pjmartel":1,"deepakshilkar":1,"shrijoshi20":1,"nayanmondal1337":1,"Tangbbmc":1,"ggoetten":1,"rjrich":1},"pull_request_authors":{"Valdes-Tresanco-MS":5},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10117187,"issues_count":31659705,"pull_requests_count":98542721,"authors_count":10708861,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":2},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"Narsil-A":1,"Oxeda":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"Valdes-Tresanco-MS","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Valdes-Tresanco-MS"},{"login":"marioernestovaldes","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/marioernestovaldes"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":2,"WatchEvent":9,"IssueCommentEvent":1,"ForkEvent":2},"last_year":{"IssuesEvent":2,"WatchEvent":9,"IssueCommentEvent":1,"ForkEvent":2}},"keywords":["amdock","autodock","autodock4zn","docking","pymol","scoring","vina"],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-28T10:20:24.511Z","updated_at":"2022-08-28T10:20:24.511Z","repository_link":"https://github.com/Valdes-Tresanco-MS/AMDock/blob/master/setup.py","dependencies":[{"id":3031695573,"package_name":"PyQt5","ecosystem":"pypi","requirements":"\u003e=5.15.4","direct":true,"kind":"runtime","optional":false}]}],"score":10.3256131015374,"created_at":"2025-09-08T11:18:47.873Z","updated_at":"2025-10-07T08:25:23.644Z","avatar_url":"https://github.com/Valdes-Tresanco-MS.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":91,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1186/s13062-020-00267-2"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/67436","html_url":"https://science.ecosyste.ms/projects/67436"}