{"id":68062,"name":"hicassembler","description":"Software to assemble contigs/scaffolds into chromosomes using Hi-C data","url":"https://github.com/maxplanck-ie/hicassembler","last_synced_at":"2025-09-08T14:03:22.549Z","repository":{"id":57437284,"uuid":"72266031","full_name":"maxplanck-ie/HiCAssembler","owner":"maxplanck-ie","description":"Software to assemble contigs/scaffolds into chromosomes using Hi-C data","archived":false,"fork":false,"pushed_at":"2024-09-26T11:42:19.000Z","size":8712,"stargazers_count":29,"open_issues_count":19,"forks_count":4,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-08-19T06:10:08.908Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/maxplanck-ie.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-10-29T05:04:01.000Z","updated_at":"2025-06-30T15:59:26.000Z","dependencies_parsed_at":"2022-09-11T03:22:03.560Z","dependency_job_id":null,"html_url":"https://github.com/maxplanck-ie/HiCAssembler","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/maxplanck-ie/HiCAssembler","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/maxplanck-ie","download_url":"https://codeload.github.com/maxplanck-ie/HiCAssembler/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/sbom","scorecard":{"id":629883,"data":{"date":"2025-08-11","repo":{"name":"github.com/maxplanck-ie/HiCAssembler","commit":"25dc951240d8d7f69aa8cc85d6516ac8fdccbb8f"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":1.7,"checks":[{"name":"Code-Review","score":0,"reason":"Found 0/16 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"License","score":0,"reason":"license file not detected","details":["Warn: project does not have a license file"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":3,"reason":"7 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2022-42991 / GHSA-v3c5-jqr6-7qm8","Warn: Project is vulnerable to: PYSEC-2021-856 / GHSA-5545-2q6w-2gh6","Warn: Project is vulnerable to: GHSA-6p56-wp2h-9hxr","Warn: Project is vulnerable to: PYSEC-2019-108 / GHSA-9fq2-x9r6-wfmf","Warn: Project is vulnerable to: PYSEC-2021-857 / GHSA-f7c7-j99h-c22f","Warn: Project is vulnerable to: GHSA-fpfv-jqm9-f5jm","Warn: Project is vulnerable to: PYSEC-2017-1 / GHSA-frgw-fgh6-9g52"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 15 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-21T07:34:12.346Z","repository_id":57437284,"created_at":"2025-08-21T07:34:12.346Z","updated_at":"2025-08-21T07:34:12.346Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274196115,"owners_count":25239148,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"maxplanck-ie","name":"Max Planck Institute of Immunobiology and Epigenetics","uuid":"10848522","kind":"organization","description":"","email":null,"website":"https://www.ie-freiburg.mpg.de/","location":"Freiburg, Germany","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/10848522?v=4","repositories_count":35,"last_synced_at":"2024-03-27T12:19:38.769Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/maxplanck-ie","funding_links":[],"total_stars":516,"followers":32,"following":0,"created_at":"2022-11-06T04:21:12.419Z","updated_at":"2024-03-27T12:19:39.659Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/maxplanck-ie","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/maxplanck-ie/repositories"},"packages":[{"id":2758849,"name":"hicassembler","ecosystem":"pypi","description":"Hi-C guided genome assembly","homepage":"https://github.com/maxplanck-ie/HiCAssembler","licenses":"BSD","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/maxplanck-ie/HiCAssembler","keywords_array":[],"namespace":null,"versions_count":2,"first_release_published_at":"2018-11-12T19:53:38.000Z","latest_release_published_at":"2018-11-15T19:23:23.000Z","latest_release_number":"1.1.1","last_synced_at":"2025-08-19T05:49:07.768Z","created_at":"2022-04-10T11:14:39.253Z","updated_at":"2025-08-19T06:25:42.335Z","registry_url":"https://pypi.org/project/hicassembler/","install_command":"pip install hicassembler --index-url https://pypi.org/simple","documentation_url":"https://hicassembler.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 5 - Production/Stable","Environment :: Console","Framework :: Jupyter","Intended Audience :: Developers","Intended Audience :: Science/Research","Natural Language :: English","Operating System :: MacOS :: MacOS X","Operating System :: Microsoft :: Windows","Operating System :: POSIX :: Linux","Programming Language :: Python :: 3","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"hicassembler","project_status":null},"repo_metadata":{"id":57437284,"uuid":"72266031","full_name":"maxplanck-ie/HiCAssembler","owner":"maxplanck-ie","description":"Software to assemble contigs/scaffolds into chromosomes using Hi-C data","archived":false,"fork":false,"pushed_at":"2024-09-26T11:42:19.000Z","size":8712,"stargazers_count":28,"open_issues_count":19,"forks_count":4,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-06-09T09:54:34.612Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/maxplanck-ie.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-10-29T05:04:01.000Z","updated_at":"2025-02-10T22:16:03.000Z","dependencies_parsed_at":"2022-09-11T03:22:03.560Z","dependency_job_id":null,"html_url":"https://github.com/maxplanck-ie/HiCAssembler","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/maxplanck-ie/HiCAssembler","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/maxplanck-ie","download_url":"https://codeload.github.com/maxplanck-ie/HiCAssembler/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271108608,"owners_count":24700571,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-19T02:00:09.176Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"maxplanck-ie","name":"Max Planck Institute of Immunobiology and Epigenetics","uuid":"10848522","kind":"organization","description":"","email":null,"website":"https://www.ie-freiburg.mpg.de/","location":"Freiburg, Germany","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/10848522?v=4","repositories_count":35,"last_synced_at":"2024-03-27T12:19:38.769Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/maxplanck-ie","funding_links":[],"total_stars":516,"followers":32,"following":0,"created_at":"2022-11-06T04:21:12.419Z","updated_at":"2024-03-27T12:19:39.659Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/maxplanck-ie","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/maxplanck-ie/repositories"},"tags":[{"name":"1.1.1","sha":"982acd3d662bc7adbc3f9a960df52624e895f756","kind":"commit","published_at":"2018-11-15T19:04:18.000Z","download_url":"https://codeload.github.com/maxplanck-ie/HiCAssembler/tar.gz/1.1.1","html_url":"https://github.com/maxplanck-ie/HiCAssembler/releases/tag/1.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/maxplanck-ie/HiCAssembler@1.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags/1.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags/1.1.1/manifests"},{"name":"1.1","sha":"76dea7306ebe294ec6f0ea4b60ccb29732709564","kind":"commit","published_at":"2018-11-12T19:43:58.000Z","download_url":"https://codeload.github.com/maxplanck-ie/HiCAssembler/tar.gz/1.1","html_url":"https://github.com/maxplanck-ie/HiCAssembler/releases/tag/1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/maxplanck-ie/HiCAssembler@1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags/1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags/1.1/manifests"},{"name":"1.0","sha":"7a212b1cca3552d3d57665c25f781953592539b3","kind":"commit","published_at":"2018-10-07T08:06:11.000Z","download_url":"https://codeload.github.com/maxplanck-ie/HiCAssembler/tar.gz/1.0","html_url":"https://github.com/maxplanck-ie/HiCAssembler/releases/tag/1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/maxplanck-ie/HiCAssembler@1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags/1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/tags/1.0/manifests"}]},"repo_metadata_updated_at":"2025-08-19T06:25:42.334Z","dependent_packages_count":0,"downloads":20,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":38.42641552165243,"dependent_repos_count":21.727697944596816,"dependent_packages_count":9.995259271770403,"stargazers_count":12.259215242805496,"forks_count":15.338153356582557,"docker_downloads_count":null,"average":19.54934826748154},"purl":"pkg:pypi/hicassembler","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/hicassembler","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/hicassembler","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/hicassembler/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-06-09T09:54:35.591Z","issues_count":19,"pull_requests_count":6,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":95.16666666666667,"issues_closed_count":0,"pull_requests_closed_count":6,"pull_request_authors_count":1,"issue_authors_count":16,"avg_comments_per_issue":2.5789473684210527,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":6,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/issues","maintainers":[{"login":"fidelram","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/fidelram"},{"login":"gtrichard","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gtrichard"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicassembler/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicassembler/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicassembler/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicassembler/related_packages","maintainers":[{"uuid":"Fidel.Ramirez","login":"Fidel.Ramirez","name":null,"email":null,"url":null,"packages_count":4,"html_url":"https://pypi.org/user/Fidel.Ramirez/","role":null,"created_at":"2023-02-24T09:53:37.665Z","updated_at":"2023-02-24T09:53:37.665Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/Fidel.Ramirez/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726150,"maintainers_count":308801,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":592442,"full_name":"maxplanck-ie/HiCAssembler","default_branch":"master","committers":[{"name":"fidelram","email":"fidel.ramirez@gmail.com","login":null,"count":126},{"name":"Fidel Ramirez","email":"ramirez@ie-freiburg.mpg.de","login":null,"count":57},{"name":"GinaRe","email":"34270162+GinaRe","login":"GinaRe","count":4},{"name":"Gina Renschler","email":"renschler@ie-freiburg.mpg.de","login":null,"count":2}],"total_commits":189,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":47.25,"dds":0.33333333333333337,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:09:41.901Z","last_synced_commit":"285986a15646d5085efdb9719f25c20bc4b1383b","created_at":"2023-03-09T06:24:54.619Z","updated_at":"2023-10-25T14:09:41.902Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483987,"commits_count":854371652,"contributors_count":31146699,"owners_count":908917,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"maxplanck-ie/HiCAssembler","html_url":"https://github.com/maxplanck-ie/HiCAssembler","last_synced_at":"2025-08-19T05:52:47.515Z","status":"error","issues_count":19,"pull_requests_count":6,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":95.16666666666667,"issues_closed_count":0,"pull_requests_closed_count":6,"pull_request_authors_count":1,"issue_authors_count":16,"avg_comments_per_issue":2.5789473684210527,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":6,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T15:26:40.041Z","updated_at":"2025-08-19T05:52:47.516Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/maxplanck-ie%2FHiCAssembler/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":18,"COLLABORATOR":1},"pull_request_author_associations_count":{"MEMBER":6},"issue_authors":{"xinwang-bio":3,"dominik-handler":2,"yangxiaofeill":1,"clauderispe":1,"ddelgadillod":1,"nadegeguiglielmoni":1,"zhuangfjnu":1,"ManuPoretti":1,"zhanyinx":1,"MartinLaforest":1,"rob123king":1,"karimi81":1,"gtrichard":1,"yongyiyu":1,"francicco":1,"ens-LCampbell":1},"pull_request_authors":{"fidelram":6},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.204Z","repositories_count":8432811,"issues_count":20170737,"pull_requests_count":49525802,"authors_count":7040408,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"clauderispe":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"fidelram","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/fidelram"},{"login":"gtrichard","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gtrichard"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-09-11T03:22:03.553Z","updated_at":"2022-09-11T03:22:03.553Z","repository_link":"https://github.com/maxplanck-ie/HiCAssembler/blob/master/requirements.txt","dependencies":[{"id":4449890429,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.13.1","direct":true,"kind":"runtime","optional":false},{"id":4449890430,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003e=2.0.0","direct":true,"kind":"runtime","optional":false},{"id":4449890431,"package_name":"pyBigWig","ecosystem":"pypi","requirements":"\u003e=0.3.10","direct":true,"kind":"runtime","optional":false},{"id":4449890432,"package_name":"future","ecosystem":"pypi","requirements":"\u003e=0.16.0","direct":true,"kind":"runtime","optional":false},{"id":4449890433,"package_name":"hicexplorer","ecosystem":"pypi","requirements":"\u003e=2.1.1","direct":true,"kind":"runtime","optional":false},{"id":4449890434,"package_name":"cooler","ecosystem":"pypi","requirements":"\u003e=0.7.6","direct":true,"kind":"runtime","optional":false},{"id":4449890435,"package_name":"networkx","ecosystem":"pypi","requirements":"\u003e=2.1","direct":true,"kind":"runtime","optional":false},{"id":4449890436,"package_name":"versioneer","ecosystem":"pypi","requirements":"\u003e=0.18","direct":true,"kind":"runtime","optional":false},{"id":4449890437,"package_name":"pytest","ecosystem":"pypi","requirements":"\u003e=2.8.1","direct":true,"kind":"runtime","optional":false}]}],"score":8.348537825386098,"created_at":"2025-09-08T11:18:52.744Z","updated_at":"2025-10-07T08:25:29.675Z","avatar_url":"https://github.com/maxplanck-ie.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":20,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1101/gad.328971.119"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/68062","html_url":"https://science.ecosyste.ms/projects/68062"}