{"id":68158,"name":"emirge","description":"EMIRGE reconstructs full length ribosomal genes from short read sequencing data.","url":"https://github.com/csmiller/emirge","last_synced_at":"2025-09-08T14:04:56.531Z","repository":{"id":56196100,"uuid":"1647002","full_name":"csmiller/EMIRGE","owner":"csmiller","description":"EMIRGE reconstructs full length ribosomal genes from short read sequencing data.","archived":false,"fork":false,"pushed_at":"2023-09-15T20:48:42.000Z","size":94534,"stargazers_count":38,"open_issues_count":16,"forks_count":26,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-09-06T08:59:16.506Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/csmiller.png","metadata":{"files":{"readme":"README.txt","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2011-04-21T20:01:22.000Z","updated_at":"2025-06-23T18:45:50.000Z","dependencies_parsed_at":"2022-08-15T14:31:05.025Z","dependency_job_id":"b5ac132f-ca93-4c73-bd65-31898ee847fb","html_url":"https://github.com/csmiller/EMIRGE","commit_stats":{"total_commits":73,"total_committers":6,"mean_commits":"12.166666666666666","dds":0.4657534246575342,"last_synced_commit":"b25dbb3726d361bc720ee35872325019b4048980"},"previous_names":[],"tags_count":18,"template":false,"template_full_name":null,"purl":"pkg:github/csmiller/EMIRGE","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/csmiller","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274196116,"owners_count":25239148,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":null,"packages":[{"id":2722815,"name":"emirge","ecosystem":"pypi","description":"EMIRGE reconstructs full length sequences from short sequencing reads","homepage":"https://github.com/csmiller/EMIRGE","licenses":"GPLv3+","normalized_licenses":["GPL-3.0+"],"repository_url":"https://github.com/csmiller/EMIRGE","keywords_array":["rRNA","EM"],"namespace":null,"versions_count":14,"first_release_published_at":"2015-04-06T05:48:59.000Z","latest_release_published_at":"2016-12-03T02:19:35.000Z","latest_release_number":"0.61.1","last_synced_at":"2025-09-05T14:49:08.742Z","created_at":"2022-04-10T10:53:07.720Z","updated_at":"2025-09-06T08:59:17.646Z","registry_url":"https://pypi.org/project/emirge/","install_command":"pip install emirge --index-url https://pypi.org/simple","documentation_url":"https://emirge.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 4 - Beta","Environment :: Console","Intended Audience :: Developers","Intended Audience :: Science/Research","License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)","Operating System :: POSIX","Programming Language :: Cython","Programming Language :: Python :: 2.7","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"emirge","project_status":null},"repo_metadata":{"id":56196100,"uuid":"1647002","full_name":"csmiller/EMIRGE","owner":"csmiller","description":"EMIRGE reconstructs full length ribosomal genes from short read sequencing data.","archived":false,"fork":false,"pushed_at":"2023-09-15T20:48:42.000Z","size":94534,"stargazers_count":38,"open_issues_count":16,"forks_count":26,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-07-28T15:17:01.713Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/csmiller.png","metadata":{"files":{"readme":"README.txt","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2011-04-21T20:01:22.000Z","updated_at":"2025-06-23T18:45:50.000Z","dependencies_parsed_at":"2022-08-15T14:31:05.025Z","dependency_job_id":"b5ac132f-ca93-4c73-bd65-31898ee847fb","html_url":"https://github.com/csmiller/EMIRGE","commit_stats":{"total_commits":73,"total_committers":6,"mean_commits":"12.166666666666666","dds":0.4657534246575342,"last_synced_commit":"b25dbb3726d361bc720ee35872325019b4048980"},"previous_names":[],"tags_count":18,"template":false,"template_full_name":null,"purl":"pkg:github/csmiller/EMIRGE","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/csmiller","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273880228,"owners_count":25184429,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-06T02:00:13.247Z","response_time":2576,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"tags":[{"name":"v0.61.1","sha":"28bacc710d3346052cac6d432e3adaf9515d4519","kind":"commit","published_at":"2016-12-03T02:17:34.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.61.1","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.61.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.61.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.61.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.61.1/manifests"},{"name":"v0.61.0","sha":"b25dbb3726d361bc720ee35872325019b4048980","kind":"commit","published_at":"2016-11-09T20:14:08.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.61.0","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.61.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.61.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.61.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.61.0/manifests"},{"name":"v0.60.4","sha":"3e77fb708a9da8afd23c49973b44ef1558dcf882","kind":"commit","published_at":"2016-10-13T23:31:10.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60.4","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.4/manifests"},{"name":"v0.60.3","sha":"28abb0f8d8ade9ba69807c601d86f732a04f463e","kind":"commit","published_at":"2016-04-01T19:21:26.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60.3","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.3/manifests"},{"name":"v0.60.2","sha":"9c76a172a1d6fd00fda85d5dddc0e3d15e5b6b55","kind":"commit","published_at":"2016-03-18T20:08:51.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60.2","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2/manifests"},{"name":"v0.60.2a6","sha":"b09e7ba8afb38bf371ecabfbbcd887bfb6286b83","kind":"commit","published_at":"2016-03-18T07:26:25.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60.2a6","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60.2a6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60.2a6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2a6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2a6/manifests"},{"name":"v0.60.2a5","sha":"6b3d7ca63842a87a7c395d9c81cd745b285d402f","kind":"commit","published_at":"2016-03-18T07:04:26.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60.2a5","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60.2a5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60.2a5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2a5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2a5/manifests"},{"name":"v0.60.2a4","sha":"2218a3e8706a51c562d3978bed612956c9c89e44","kind":"commit","published_at":"2016-03-18T04:29:53.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60.2a4","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60.2a4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60.2a4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2a4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.2a4/manifests"},{"name":"v0.60.1","sha":"aa905f8f34750eaa72b11d6387c4a7c40d058b0d","kind":"commit","published_at":"2016-02-26T00:59:21.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60.1","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60.1/manifests"},{"name":"v0.60","sha":"335bb6ffb2c7c35b4776a2ea2f3aea05392faa59","kind":"tag","published_at":"2012-08-09T17:32:58.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.60","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.60","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.60","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.60/manifests"},{"name":"v0.50","sha":"b3ab71ccdf9de2f4225cd22fe16f7487ed89282c","kind":"tag","published_at":"2012-07-04T04:37:08.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.50","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.50","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.50","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.50","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.50/manifests"},{"name":"v0.5","sha":"b3ab71ccdf9de2f4225cd22fe16f7487ed89282c","kind":"tag","published_at":"2012-07-04T04:37:08.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.5","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.5/manifests"},{"name":"v0.32","sha":"1077acc8291ee1c8b59289c22dd6bef9b6c181e9","kind":"tag","published_at":"2011-09-08T23:47:40.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.32","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.32","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.32","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.32","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.32/manifests"},{"name":"v0.30","sha":"f7c1f4baced24cb55ad2d306d5d8b1f49b3801cb","kind":"tag","published_at":"2011-08-12T21:29:53.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.30","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.30","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.30","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.30","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.30/manifests"},{"name":"v0.23","sha":"fb580edb8d60a9567f9b16ccbc62323c770496ba","kind":"tag","published_at":"2011-08-01T05:26:47.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.23","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.23","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.23","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.23","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.23/manifests"},{"name":"v0.22","sha":"f6e6bab59f3fea2fc4b7284de5414e3edd360199","kind":"tag","published_at":"2011-08-01T03:33:33.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.22","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.22","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.22","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.22","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.22/manifests"},{"name":"v0.21","sha":"945f6eef2ec00f42d4f82d023a34ebebaee2905a","kind":"tag","published_at":"2011-04-25T21:15:12.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.21","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.21","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.21","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.21","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.21/manifests"},{"name":"v0.2","sha":"ceb018ecee1c13091d518bf9e2b635083c179492","kind":"tag","published_at":"2011-04-21T19:42:23.000Z","download_url":"https://codeload.github.com/csmiller/EMIRGE/tar.gz/v0.2","html_url":"https://github.com/csmiller/EMIRGE/releases/tag/v0.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/csmiller/EMIRGE@v0.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/tags/v0.2/manifests"}]},"repo_metadata_updated_at":"2025-09-06T08:59:17.646Z","dependent_packages_count":0,"downloads":12,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":35.86513629842181,"dependent_repos_count":67.39416964611944,"dependent_packages_count":10.032368031403879,"stargazers_count":10.542860805461325,"forks_count":7.21673745838595,"docker_downloads_count":null,"average":26.210254447958484},"purl":"pkg:pypi/emirge","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/emirge","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/emirge","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/emirge/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-28T15:11:47.706Z","issues_count":33,"pull_requests_count":8,"avg_time_to_close_issue":26607696.157894738,"avg_time_to_close_pull_request":25486262.166666668,"issues_closed_count":19,"pull_requests_closed_count":6,"pull_request_authors_count":5,"issue_authors_count":20,"avg_comments_per_issue":1.4242424242424243,"avg_comments_per_pull_request":0.75,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/issues","maintainers":[{"login":"csmiller","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/csmiller"},{"login":"epruesse","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/epruesse"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/emirge/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/emirge/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/emirge/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/emirge/related_packages","maintainers":[{"uuid":"Chris.Miller","login":"Chris.Miller","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/Chris.Miller/","role":null,"created_at":"2023-02-24T03:56:12.854Z","updated_at":"2023-02-24T03:56:12.854Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/Chris.Miller/packages"},{"uuid":"epruesse","login":"epruesse","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/epruesse/","role":null,"created_at":"2023-02-24T03:56:12.861Z","updated_at":"2023-02-24T03:56:12.861Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/epruesse/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726156,"maintainers_count":308801,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":573736,"full_name":"csmiller/EMIRGE","default_branch":"master","committers":[{"name":"Chris Miller","email":"csmiller@berkeley.edu","login":null,"count":39},{"name":"Elmar Pruesse","email":"elmar.pruesse@ucdenver.edu","login":null,"count":19},{"name":"Chris Miller","email":"christopher.s.miller@ucdenver.edu","login":null,"count":12},{"name":"Chris Miller","email":"csmiller@gmail.com","login":null,"count":1},{"name":"Chris Miller","email":"chris.miller@ucdenver.edu","login":null,"count":1},{"name":"Elmar Pruesse","email":"epruesse","login":"epruesse","count":1}],"total_commits":73,"total_committers":6,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":12.166666666666666,"dds":0.4657534246575342,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:02:40.706Z","last_synced_commit":"b25dbb3726d361bc720ee35872325019b4048980","created_at":"2023-03-09T05:32:41.932Z","updated_at":"2023-10-25T14:02:40.707Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"csmiller/EMIRGE","html_url":"https://github.com/csmiller/EMIRGE","last_synced_at":"2025-07-28T15:11:47.706Z","status":"error","issues_count":33,"pull_requests_count":8,"avg_time_to_close_issue":26607696.157894738,"avg_time_to_close_pull_request":25486262.166666668,"issues_closed_count":19,"pull_requests_closed_count":6,"pull_request_authors_count":5,"issue_authors_count":20,"avg_comments_per_issue":1.4242424242424243,"avg_comments_per_pull_request":0.75,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T13:28:52.094Z","updated_at":"2025-07-28T15:11:47.707Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/csmiller%2FEMIRGE/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":24,"OWNER":9},"pull_request_author_associations_count":{"NONE":5,"COLLABORATOR":3},"issue_authors":{"csmiller":9,"ppericard":3,"kgwin1":2,"jvollme":2,"yxxue":2,"Arkadiy-Garber":1,"audy":1,"ctSkennerton":1,"rmueller35":1,"ETaSky":1,"TheOneHyer":1,"JMBattista":1,"domenico-simone":1,"tseemann":1,"cmorganl":1,"mlhoggard":1,"andersgs":1,"rbeinart":1,"fangly":1,"aslett1":1},"pull_request_authors":{"epruesse":3,"luispedro":2,"danillo-alvarenga":1,"andersgs":1,"jgolob":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10166699,"issues_count":32013288,"pull_requests_count":100268859,"authors_count":10729412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"csmiller","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/csmiller"},{"login":"epruesse","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/epruesse"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-15T14:31:03.824Z","updated_at":"2022-08-15T14:31:03.824Z","repository_link":"https://github.com/csmiller/EMIRGE/blob/master/requirements.txt","dependencies":[{"id":1791045918,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":1791045919,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":1791045920,"package_name":"pysam","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":1791045921,"package_name":"biopython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-15T14:31:04.204Z","updated_at":"2022-08-15T14:31:04.204Z","repository_link":"https://github.com/csmiller/EMIRGE/blob/master/setup.py","dependencies":[{"id":1791051456,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":8.419800845407588,"created_at":"2025-09-08T11:18:53.639Z","updated_at":"2025-10-07T08:25:30.243Z","avatar_url":"https://github.com/csmiller.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":12,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/68158","html_url":"https://science.ecosyste.ms/projects/68158"}