{"id":68590,"name":"ingranalyze","description":"Influence graph analysis, consistency check, diagnosis, repair and prediction","url":"https://github.com/bioasp/ingranalyze","last_synced_at":"2025-09-08T14:12:12.944Z","repository":{"id":14350101,"uuid":"17059688","full_name":"bioasp/ingranalyze","owner":"bioasp","description":"Influence graph analysis, consistency check, diagnosis, repair and prediction","archived":true,"fork":false,"pushed_at":"2021-08-28T05:49:50.000Z","size":86,"stargazers_count":4,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-08-28T17:44:59.513Z","etag":null,"topics":["cell-signalling"],"latest_commit_sha":null,"homepage":"bioasp.github.io/ingranalyze","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bioasp.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGES.txt","contributing":null,"funding":null,"license":"COPYING","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-02-21T15:05:11.000Z","updated_at":"2023-01-28T06:57:34.000Z","dependencies_parsed_at":"2022-09-03T08:32:52.879Z","dependency_job_id":null,"html_url":"https://github.com/bioasp/ingranalyze","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/bioasp/ingranalyze","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioasp","download_url":"https://codeload.github.com/bioasp/ingranalyze/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274196122,"owners_count":25239148,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bioasp","name":"BioASP","uuid":"6709743","kind":"organization","description":"ASP-based software for Systems Biology","email":"bioasp@gmail.com","website":"bioasp.github.io","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6709743?v=4","repositories_count":16,"last_synced_at":"2023-08-10T17:17:31.036Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bioasp","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T23:57:30.510Z","updated_at":"2023-08-10T17:17:34.475Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioasp","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioasp/repositories"},"packages":[{"id":2767134,"name":"ingranalyze","ecosystem":"pypi","description":"Influence graph analysis, consistency check, diagnosis, repair and prediction.","homepage":"http://bioasp.github.io/ingranalyze/","licenses":"GPLv3+","normalized_licenses":["GPL-3.0+"],"repository_url":"https://github.com/bioasp/ingranalyze","keywords_array":[],"namespace":null,"versions_count":10,"first_release_published_at":"2012-12-05T15:55:10.000Z","latest_release_published_at":"2019-03-01T10:12:45.000Z","latest_release_number":"1.5.6","last_synced_at":"2025-08-28T11:49:48.058Z","created_at":"2022-04-10T11:18:49.667Z","updated_at":"2025-08-28T12:18:44.965Z","registry_url":"https://pypi.org/project/ingranalyze/","install_command":"pip install ingranalyze --index-url https://pypi.org/simple","documentation_url":"https://ingranalyze.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":[],"normalized_name":"ingranalyze","project_status":null},"repo_metadata":{"id":14350101,"uuid":"17059688","full_name":"bioasp/ingranalyze","owner":"bioasp","description":"Influence graph analysis, consistency check, diagnosis, repair and prediction","archived":true,"fork":false,"pushed_at":"2021-08-28T05:49:50.000Z","size":86,"stargazers_count":4,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-06-15T10:48:37.390Z","etag":null,"topics":["cell-signalling"],"latest_commit_sha":null,"homepage":"bioasp.github.io/ingranalyze","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bioasp.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGES.txt","contributing":null,"funding":null,"license":"COPYING","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-02-21T15:05:11.000Z","updated_at":"2023-01-28T06:57:34.000Z","dependencies_parsed_at":"2022-09-03T08:32:52.879Z","dependency_job_id":null,"html_url":"https://github.com/bioasp/ingranalyze","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/bioasp/ingranalyze","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioasp","download_url":"https://codeload.github.com/bioasp/ingranalyze/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272498195,"owners_count":24944819,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-28T02:00:10.768Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"bioasp","name":"BioASP","uuid":"6709743","kind":"organization","description":"ASP-based software for Systems Biology","email":"bioasp@gmail.com","website":"bioasp.github.io","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6709743?v=4","repositories_count":16,"last_synced_at":"2023-08-10T17:17:31.036Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bioasp","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T23:57:30.510Z","updated_at":"2023-08-10T17:17:34.475Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioasp","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioasp/repositories"},"tags":[{"name":"ingranalyze-1.5.3","sha":"e4d3a722c827a6f572f2e0e761757a30a1efc668","kind":"commit","published_at":"2014-06-02T07:17:51.000Z","download_url":"https://codeload.github.com/bioasp/ingranalyze/tar.gz/ingranalyze-1.5.3","html_url":"https://github.com/bioasp/ingranalyze/releases/tag/ingranalyze-1.5.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/bioasp/ingranalyze@ingranalyze-1.5.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5.3/manifests"},{"name":"ingranalyze-1.5.2","sha":"3ad0f985b4791c91df5fb953972a1ad5957e97fd","kind":"commit","published_at":"2014-05-21T12:36:50.000Z","download_url":"https://codeload.github.com/bioasp/ingranalyze/tar.gz/ingranalyze-1.5.2","html_url":"https://github.com/bioasp/ingranalyze/releases/tag/ingranalyze-1.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/bioasp/ingranalyze@ingranalyze-1.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5.2/manifests"},{"name":"ingranalyze-1.5.1","sha":"9fb645654466f019756e7bfdf6479d4ed7e4728a","kind":"commit","published_at":"2014-03-06T09:26:05.000Z","download_url":"https://codeload.github.com/bioasp/ingranalyze/tar.gz/ingranalyze-1.5.1","html_url":"https://github.com/bioasp/ingranalyze/releases/tag/ingranalyze-1.5.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/bioasp/ingranalyze@ingranalyze-1.5.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5.1/manifests"},{"name":"ingranalyze-1.5","sha":"a83c263a8209405473c8537de387485e3a255921","kind":"commit","published_at":"2014-03-04T11:17:27.000Z","download_url":"https://codeload.github.com/bioasp/ingranalyze/tar.gz/ingranalyze-1.5","html_url":"https://github.com/bioasp/ingranalyze/releases/tag/ingranalyze-1.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/bioasp/ingranalyze@ingranalyze-1.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/tags/ingranalyze-1.5/manifests"}]},"repo_metadata_updated_at":"2025-08-28T12:18:44.965Z","dependent_packages_count":0,"downloads":5,"downloads_period":"last-month","dependent_repos_count":3,"rankings":{"downloads":41.2976678751773,"dependent_repos_count":9.011536963001491,"dependent_packages_count":9.995259271770403,"stargazers_count":23.074103148265795,"forks_count":29.80555336965972,"docker_downloads_count":null,"average":22.63682412557494},"purl":"pkg:pypi/ingranalyze","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/ingranalyze","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/ingranalyze","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/ingranalyze/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-16T21:46:22.853Z","issues_count":2,"pull_requests_count":2,"avg_time_to_close_issue":33512435.5,"avg_time_to_close_pull_request":18.5,"issues_closed_count":2,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":2.5,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/issues","maintainers":[{"login":"sthiele","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sthiele"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ingranalyze/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ingranalyze/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ingranalyze/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ingranalyze/related_packages","maintainers":[{"uuid":"Sven.Thiele","login":"Sven.Thiele","name":null,"email":null,"url":null,"packages_count":11,"html_url":"https://pypi.org/user/Sven.Thiele/","role":null,"created_at":"2023-02-24T11:18:07.079Z","updated_at":"2023-02-24T11:18:07.079Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/Sven.Thiele/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726156,"maintainers_count":308801,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":1405265,"full_name":"bioasp/ingranalyze","default_branch":"master","committers":[{"name":"Sven Thiele","email":"sthiele78@gmail.com","login":null,"count":36},{"name":"Sven Thiele","email":"thieles@pc813.mpi-magdeburg.mpg.de","login":null,"count":2},{"name":"Sven Thiele","email":"sthiele@uni-potsdam.de","login":null,"count":1}],"total_commits":39,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":13.0,"dds":0.07692307692307687,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:12:06.088Z","last_synced_commit":"b3b4509d630af011d279eda80666d38e627b0a1f","created_at":"2023-10-25T14:11:09.678Z","updated_at":"2023-10-25T14:12:06.089Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483987,"commits_count":854371652,"contributors_count":31146699,"owners_count":908917,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"bioasp/ingranalyze","html_url":"https://github.com/bioasp/ingranalyze","last_synced_at":"2025-08-28T12:18:48.429Z","status":"error","issues_count":2,"pull_requests_count":2,"avg_time_to_close_issue":33512435.5,"avg_time_to_close_pull_request":18.5,"issues_closed_count":2,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":2.5,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T15:54:58.744Z","updated_at":"2025-08-28T12:18:48.430Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioasp%2Fingranalyze/issues","issue_labels_count":{"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"MEMBER":1,"NONE":1},"pull_request_author_associations_count":{"MEMBER":2},"issue_authors":{"sthiele":1,"akittas":1},"pull_request_authors":{"sthiele":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10082364,"issues_count":31225876,"pull_requests_count":96082853,"authors_count":10694162,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"sthiele","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sthiele"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["cell-signalling"],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-09-03T08:32:52.739Z","updated_at":"2022-09-03T08:32:52.739Z","repository_link":"https://github.com/bioasp/ingranalyze/blob/master/setup.py","dependencies":[{"id":3672704569,"package_name":"pyasp","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":4.68213122712422,"created_at":"2025-09-08T11:18:56.606Z","updated_at":"2025-10-07T08:25:36.399Z","avatar_url":"https://github.com/bioasp.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":5,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["metabolic-pathways","metabolic-reconstruction"],"project_url":"https://science.ecosyste.ms/api/v1/projects/68590","html_url":"https://science.ecosyste.ms/projects/68590"}