{"id":68703,"name":"itclust","description":"Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis","url":"https://github.com/jianhuupenn/itclust","last_synced_at":"2025-09-08T14:15:47.564Z","repository":{"id":62571875,"uuid":"218794522","full_name":"jianhuupenn/ItClust","owner":"jianhuupenn","description":"Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis","archived":false,"fork":false,"pushed_at":"2022-01-04T16:18:35.000Z","size":84584,"stargazers_count":51,"open_issues_count":1,"forks_count":8,"subscribers_count":4,"default_branch":"master","last_synced_at":"2024-09-24T10:40:22.457Z","etag":null,"topics":["cell-classification","clustering-algorithm","machine-learning","neural-network","rna-seq","single-cell","transfer-learning"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jianhuupenn.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-10-31T15:11:11.000Z","updated_at":"2024-07-13T09:01:23.000Z","dependencies_parsed_at":"2022-11-03T18:26:45.728Z","dependency_job_id":null,"html_url":"https://github.com/jianhuupenn/ItClust","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/jianhuupenn/ItClust","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jianhuupenn","download_url":"https://codeload.github.com/jianhuupenn/ItClust/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/sbom","scorecard":{"id":519700,"data":{"date":"2025-08-11","repo":{"name":"github.com/jianhuupenn/ItClust","commit":"059b8d66d4f15bd79a2db5c9541f32c9685ba502"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.2,"checks":[{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":0,"reason":"Found 0/30 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"SAST","score":0,"reason":"no SAST tool detected","details":["Warn: no pull requests merged into dev branch"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":7,"reason":"binaries present in source code","details":["Warn: binary detected: ItClust_package/dist/ItClust-0.0.5-py3-none-any.whl:1","Warn: binary detected: ItClust_package/dist/ItClust-1.1.0-py3-none-any.whl:1","Warn: binary detected: ItClust_package/dist/ItClust-1.2.0-py3-none-any.whl:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":0,"reason":"license file not detected","details":["Warn: project does not have a license file"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-20T02:40:33.158Z","repository_id":62571875,"created_at":"2025-08-20T02:40:33.158Z","updated_at":"2025-08-20T02:40:33.158Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274196420,"owners_count":25239211,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"jianhuupenn","name":"JianHu","uuid":"26659799","kind":"user","description":"Assistant Professor at the Department of Human Genetics, Emory School of Medicine","email":"","website":"jianhu-lab.org/","location":"Atlanta","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/26659799?u=aeab62967f6da42647ea0b58bdfe40d623f775eb\u0026v=4","repositories_count":3,"last_synced_at":"2023-03-05T07:18:21.402Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/jianhuupenn","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T08:13:27.864Z","updated_at":"2023-03-05T07:18:21.468Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jianhuupenn","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jianhuupenn/repositories"},"packages":[{"id":2770824,"name":"itclust","ecosystem":"pypi","description":"An Iterative Transfer learning algorithm for scRNA-seq Clustering","homepage":"https://github.com/jianhuupenn/ItClust","licenses":"MIT License","normalized_licenses":["MIT"],"repository_url":"https://github.com/jianhuupenn/ItClust","keywords_array":[],"namespace":null,"versions_count":3,"first_release_published_at":"2020-01-09T03:12:26.000Z","latest_release_published_at":"2022-01-04T16:15:36.000Z","latest_release_number":"1.2.0","last_synced_at":"2025-08-13T20:46:02.234Z","created_at":"2022-04-10T11:20:39.536Z","updated_at":"2025-08-13T20:46:02.235Z","registry_url":"https://pypi.org/project/itclust/","install_command":"pip install itclust --index-url https://pypi.org/simple","documentation_url":"https://itclust.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python :: 3"],"normalized_name":"itclust"},"repo_metadata":{"id":62571875,"uuid":"218794522","full_name":"jianhuupenn/ItClust","owner":"jianhuupenn","description":"Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis","archived":false,"fork":false,"pushed_at":"2022-01-04T16:18:35.000Z","size":84584,"stargazers_count":51,"open_issues_count":1,"forks_count":8,"subscribers_count":4,"default_branch":"master","last_synced_at":"2024-08-24T09:53:18.874Z","etag":null,"topics":["cell-classification","clustering-algorithm","machine-learning","neural-network","rna-seq","single-cell","transfer-learning"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jianhuupenn.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-10-31T15:11:11.000Z","updated_at":"2024-07-13T09:01:23.000Z","dependencies_parsed_at":"2022-11-03T18:26:45.728Z","dependency_job_id":null,"html_url":"https://github.com/jianhuupenn/ItClust","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jianhuupenn","download_url":"https://codeload.github.com/jianhuupenn/ItClust/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":219867767,"owners_count":16554362,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"jianhuupenn","name":"JianHu","uuid":"26659799","kind":"user","description":"Assistant Professor at the Department of Human Genetics, Emory School of Medicine","email":"","website":"jianhu-lab.org/","location":"Atlanta","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/26659799?u=aeab62967f6da42647ea0b58bdfe40d623f775eb\u0026v=4","repositories_count":3,"last_synced_at":"2023-03-05T07:18:21.402Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/jianhuupenn","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T08:13:27.864Z","updated_at":"2023-03-05T07:18:21.468Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jianhuupenn","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jianhuupenn/repositories"},"tags":[{"name":"V1.0.0","sha":"f4942b422374a21593a74bc17582f8fb843c7774","kind":"commit","published_at":"2020-07-06T16:30:46.000Z","download_url":"https://codeload.github.com/jianhuupenn/ItClust/tar.gz/V1.0.0","html_url":"https://github.com/jianhuupenn/ItClust/releases/tag/V1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/tags/V1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/tags/V1.0.0/manifests"}]},"repo_metadata_updated_at":"2024-09-24T10:40:23.319Z","dependent_packages_count":0,"downloads":33,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":53.41796106535745,"dependent_repos_count":21.727697944596816,"dependent_packages_count":9.995259271770403,"stargazers_count":9.511156505945912,"forks_count":11.941745150387414,"docker_downloads_count":null,"average":21.3187639876116},"purl":"pkg:pypi/itclust","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/itclust","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/itclust","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/itclust/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2024-08-24T09:48:00.619Z","issues_count":15,"pull_requests_count":1,"avg_time_to_close_issue":1624908.5,"avg_time_to_close_pull_request":14.0,"issues_closed_count":14,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":9,"avg_comments_per_issue":6.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/issues","maintainers":[{"login":"jianhuupenn","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jianhuupenn"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/itclust/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/itclust/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/itclust/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/itclust/related_packages","maintainers":[{"uuid":"jianhu","login":"jianhu","name":null,"email":null,"url":null,"packages_count":3,"html_url":"https://pypi.org/user/jianhu/","role":null,"created_at":"2023-02-24T11:56:21.321Z","updated_at":"2023-02-24T11:56:21.321Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/jianhu/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726156,"maintainers_count":308801,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":597231,"full_name":"jianhuupenn/ItClust","default_branch":"master","committers":[{"name":"JianHu","email":"jianhu@pennmedicine.upenn.edu","login":null,"count":42},{"name":"JianHu","email":"26659799+jianhuupenn","login":"jianhuupenn","count":38},{"name":"JianHu","email":"jianhu@mail.med.upenn.edu","login":null,"count":11}],"total_commits":91,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":30.333333333333332,"dds":0.5384615384615384,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:13:11.821Z","last_synced_commit":"059b8d66d4f15bd79a2db5c9541f32c9685ba502","created_at":"2023-03-09T06:38:30.265Z","updated_at":"2023-10-25T14:13:11.822Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483987,"commits_count":854371652,"contributors_count":31146699,"owners_count":908917,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"jianhuupenn/ItClust","html_url":"https://github.com/jianhuupenn/ItClust","last_synced_at":"2024-09-24T10:40:25.246Z","status":null,"issues_count":15,"pull_requests_count":1,"avg_time_to_close_issue":1624908.5,"avg_time_to_close_pull_request":14.0,"issues_closed_count":14,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":9,"avg_comments_per_issue":6.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T16:07:27.663Z","updated_at":"2024-09-24T10:40:25.246Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jianhuupenn%2FItClust/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":15},"pull_request_author_associations_count":{"OWNER":1},"issue_authors":{"bitcometz":4,"mvis1231":3,"cartal":2,"wzqwtt":1,"qingnanl":1,"mydkzgj":1,"Ci-TJ":1,"Qiuchizhai":1,"mohit1997":1},"pull_request_authors":{"jianhuupenn":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10114861,"issues_count":31630370,"pull_requests_count":98376188,"authors_count":10708428,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"jianhuupenn","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jianhuupenn"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":3,"ForkEvent":1,"CreateEvent":1},"last_year":{"WatchEvent":3,"ForkEvent":1,"CreateEvent":1}},"keywords":["cell-classification","clustering-algorithm","machine-learning","neural-network","rna-seq","single-cell","transfer-learning"],"dependencies":[{"ecosystem":"pypi","filepath":"ItClust_package/ItClust.egg-info/requires.txt","sha":null,"kind":"manifest","created_at":"2022-11-03T18:26:45.254Z","updated_at":"2022-11-03T18:26:45.254Z","repository_link":"https://github.com/jianhuupenn/ItClust/blob/master/ItClust_package/ItClust.egg-info/requires.txt","dependencies":[{"id":6585620137,"package_name":"keras","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6585620138,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6585620139,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6585620140,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6585620141,"package_name":"scanpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6585620142,"package_name":"anndata","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6585620143,"package_name":"natsort","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6585620144,"package_name":"sklearn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"ItClust_package/setup.py","sha":null,"kind":"manifest","created_at":"2022-11-03T18:26:45.521Z","updated_at":"2022-11-03T18:26:45.521Z","repository_link":"https://github.com/jianhuupenn/ItClust/blob/master/ItClust_package/setup.py","dependencies":[{"id":6585620145,"package_name":"keras","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":8.605204068738951,"created_at":"2025-09-08T11:18:57.446Z","updated_at":"2025-10-07T08:25:37.915Z","avatar_url":"https://github.com/jianhuupenn.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":33,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1038/s42256-020-00233-7"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/68703","html_url":"https://science.ecosyste.ms/projects/68703"}