{"id":69120,"name":"magic-impute","description":"MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.","url":"https://github.com/krishnaswamylab/magic","last_synced_at":"2025-09-08T14:28:52.273Z","repository":{"id":50749226,"uuid":"64703305","full_name":"KrishnaswamyLab/MAGIC","owner":"KrishnaswamyLab","description":"MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.","archived":false,"fork":false,"pushed_at":"2024-10-03T21:50:55.000Z","size":226856,"stargazers_count":363,"open_issues_count":33,"forks_count":98,"subscribers_count":21,"default_branch":"master","last_synced_at":"2025-07-03T05:05:32.417Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KrishnaswamyLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-08-01T21:35:39.000Z","updated_at":"2025-06-30T08:02:13.000Z","dependencies_parsed_at":"2025-04-08T23:43:07.737Z","dependency_job_id":null,"html_url":"https://github.com/KrishnaswamyLab/MAGIC","commit_stats":null,"previous_names":[],"tags_count":21,"template":false,"template_full_name":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/sbom","scorecard":{"id":80425,"data":{"date":"2025-08-11","repo":{"name":"github.com/KrishnaswamyLab/MAGIC","commit":"3a4ffdbe435716bb3b2fbe78f434c6cdc8dd8d78"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.8,"checks":[{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 0/2 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/deploy.yml:1","Warn: no topLevel permission defined: .github/workflows/pre-commit.yml:1","Warn: no topLevel permission defined: .github/workflows/run_tests.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: GNU General Public License v2.0: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/deploy.yml:17: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/deploy.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/deploy.yml:20: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/deploy.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/deploy.yml:45: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/deploy.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/deploy.yml:54: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/deploy.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pre-commit.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/pre-commit.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pre-commit.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/pre-commit.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pre-commit.yml:33: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/pre-commit.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pre-commit.yml:39: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/pre-commit.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pre-commit.yml:45: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/pre-commit.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pre-commit.yml:48: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/pre-commit.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pre-commit.yml:91: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/pre-commit.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/run_tests.yml:98: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:108: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:111: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:122: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/run_tests.yml:137: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:142: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/run_tests.yml:158: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:169: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/run_tests.yml:28: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:36: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:39: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:44: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/run_tests.yml:80: update your workflow using https://app.stepsecurity.io/secureworkflow/KrishnaswamyLab/MAGIC/run_tests.yml/master?enable=pin","Warn: pipCommand not pinned by hash: .github/workflows/deploy.yml:26","Warn: pipCommand not pinned by hash: .github/workflows/run_tests.yml:52","Warn: pipCommand not pinned by hash: .github/workflows/run_tests.yml:53","Warn: pipCommand not pinned by hash: .github/workflows/run_tests.yml:54","Warn: pipCommand not pinned by hash: .github/workflows/run_tests.yml:66","Warn: pipCommand not pinned by hash: .github/workflows/run_tests.yml:130","Warn: pipCommand not pinned by hash: .github/workflows/run_tests.yml:131","Warn: pipCommand not pinned by hash: .github/workflows/run_tests.yml:132","Info:   0 out of  15 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   9 third-party GitHubAction dependencies pinned","Info:   0 out of   8 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Vulnerabilities","score":0,"reason":"12 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2022-42991 / GHSA-v3c5-jqr6-7qm8","Warn: Project is vulnerable to: PYSEC-2021-856 / GHSA-5545-2q6w-2gh6","Warn: Project is vulnerable to: GHSA-6p56-wp2h-9hxr","Warn: Project is vulnerable to: PYSEC-2019-108 / GHSA-9fq2-x9r6-wfmf","Warn: Project is vulnerable to: PYSEC-2021-857 / GHSA-f7c7-j99h-c22f","Warn: Project is vulnerable to: GHSA-fpfv-jqm9-f5jm","Warn: Project is vulnerable to: PYSEC-2020-73","Warn: Project is vulnerable to: PYSEC-2020-107 / GHSA-jjw5-xxj6-pcv5","Warn: Project is vulnerable to: PYSEC-2024-110 / GHSA-jw8x-6495-233v","Warn: Project is vulnerable to: PYSEC-2020-108","Warn: Project is vulnerable to: PYSEC-2023-102","Warn: Project is vulnerable to: PYSEC-2023-114"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}}]},"last_synced_at":"2025-08-15T05:43:32.595Z","repository_id":50749226,"created_at":"2025-08-15T05:43:32.595Z","updated_at":"2025-08-15T05:43:32.595Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274197867,"owners_count":25239522,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"KrishnaswamyLab","name":"Krishnaswamy Lab","uuid":"26941417","kind":"organization","description":"","email":"smita.krishnaswamy@yale.edu","website":"https://krishnaswamylab.org","location":"New Haven, CT","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/26941417?v=4","repositories_count":31,"last_synced_at":"2024-12-16T21:32:36.043Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/KrishnaswamyLab","funding_links":[],"total_stars":null,"followers":145,"following":0,"created_at":"2022-11-11T20:32:54.219Z","updated_at":"2024-12-16T21:32:36.043Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab/repositories"},"packages":[{"id":11709696,"name":"github.com/KrishnaswamyLab/MAGIC","ecosystem":"go","description":null,"homepage":null,"licenses":"gpl-2.0","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/KrishnaswamyLab/MAGIC","keywords_array":[],"namespace":null,"versions_count":19,"first_release_published_at":"2025-05-30T10:35:39.298Z","latest_release_published_at":"2021-03-11T16:54:48.000Z","latest_release_number":"v3.0.0+incompatible","last_synced_at":"2025-09-05T05:42:53.802Z","created_at":"2025-05-30T10:33:55.202Z","updated_at":"2025-09-05T05:42:53.802Z","registry_url":"https://pkg.go.dev/github.com/KrishnaswamyLab/MAGIC","install_command":"go get github.com/KrishnaswamyLab/MAGIC","documentation_url":"https://pkg.go.dev/github.com/KrishnaswamyLab/MAGIC#section-documentation","metadata":{},"repo_metadata":{"id":50749226,"uuid":"64703305","full_name":"KrishnaswamyLab/MAGIC","owner":"KrishnaswamyLab","description":"MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.","archived":false,"fork":false,"pushed_at":"2024-10-03T21:50:55.000Z","size":226856,"stargazers_count":360,"open_issues_count":33,"forks_count":96,"subscribers_count":21,"default_branch":"master","last_synced_at":"2025-05-13T03:38:57.567Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KrishnaswamyLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-08-01T21:35:39.000Z","updated_at":"2025-05-07T17:28:33.000Z","dependencies_parsed_at":"2025-04-08T23:43:07.737Z","dependency_job_id":null,"html_url":"https://github.com/KrishnaswamyLab/MAGIC","commit_stats":null,"previous_names":[],"tags_count":21,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":257178033,"owners_count":22501863,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"repo_metadata_updated_at":"2025-05-30T10:43:04.532Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":5.784814001734242,"dependent_packages_count":5.420815499828766,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.602814750781504},"purl":"pkg:golang/github.com/%21krishnaswamy%21lab/%21m%21a%21g%21i%21c","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/KrishnaswamyLab/MAGIC","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/KrishnaswamyLab/MAGIC","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/KrishnaswamyLab/MAGIC/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-05-13T03:34:15.374Z","issues_count":81,"pull_requests_count":32,"avg_time_to_close_issue":5646503.530612245,"avg_time_to_close_pull_request":303939.8064516129,"issues_closed_count":49,"pull_requests_closed_count":31,"pull_request_authors_count":6,"issue_authors_count":73,"avg_comments_per_issue":2.802469135802469,"avg_comments_per_pull_request":0.28125,"merged_pull_requests_count":27,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":37729.0,"past_year_avg_time_to_close_pull_request":414.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.6666666666666666,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/issues","maintainers":[{"login":"dburkhardt","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dburkhardt"},{"login":"dbhaskar92","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"},{"login":"dvdijk","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dvdijk"}],"active_maintainers":[{"login":"dbhaskar92","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FKrishnaswamyLab%2FMAGIC/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FKrishnaswamyLab%2FMAGIC/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FKrishnaswamyLab%2FMAGIC/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FKrishnaswamyLab%2FMAGIC/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1954234,"maintainers_count":0,"namespaces_count":741771,"keywords_count":109320,"github":"golang","metadata":{"funded_packages_count":49342},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-08T05:47:38.872Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}},{"id":11709697,"name":"github.com/krishnaswamylab/magic","ecosystem":"go","description":null,"homepage":null,"licenses":"gpl-2.0","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/krishnaswamylab/magic","keywords_array":[],"namespace":null,"versions_count":19,"first_release_published_at":"2018-06-30T04:54:35.000Z","latest_release_published_at":"2021-03-11T16:54:48.000Z","latest_release_number":"v3.0.0+incompatible","last_synced_at":"2025-09-05T17:48:30.160Z","created_at":"2025-05-30T10:33:55.340Z","updated_at":"2025-09-05T17:48:30.161Z","registry_url":"https://pkg.go.dev/github.com/krishnaswamylab/magic","install_command":"go get github.com/krishnaswamylab/magic","documentation_url":"https://pkg.go.dev/github.com/krishnaswamylab/magic#section-documentation","metadata":{},"repo_metadata":{"id":50749226,"uuid":"64703305","full_name":"KrishnaswamyLab/MAGIC","owner":"KrishnaswamyLab","description":"MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.","archived":false,"fork":false,"pushed_at":"2024-10-03T21:50:55.000Z","size":226856,"stargazers_count":360,"open_issues_count":33,"forks_count":96,"subscribers_count":21,"default_branch":"master","last_synced_at":"2025-05-13T03:38:57.567Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KrishnaswamyLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-08-01T21:35:39.000Z","updated_at":"2025-05-07T17:28:33.000Z","dependencies_parsed_at":"2025-04-08T23:43:07.737Z","dependency_job_id":null,"html_url":"https://github.com/KrishnaswamyLab/MAGIC","commit_stats":null,"previous_names":[],"tags_count":21,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":257178031,"owners_count":22501862,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"repo_metadata_updated_at":"2025-05-30T10:43:04.556Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":5.784814001734242,"dependent_packages_count":5.420815499828766,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.602814750781504},"purl":"pkg:golang/github.com/krishnaswamylab/magic","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/krishnaswamylab/magic","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/krishnaswamylab/magic","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/krishnaswamylab/magic/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-05-13T03:34:15.374Z","issues_count":81,"pull_requests_count":32,"avg_time_to_close_issue":5646503.530612245,"avg_time_to_close_pull_request":303939.8064516129,"issues_closed_count":49,"pull_requests_closed_count":31,"pull_request_authors_count":6,"issue_authors_count":73,"avg_comments_per_issue":2.802469135802469,"avg_comments_per_pull_request":0.28125,"merged_pull_requests_count":27,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":37729.0,"past_year_avg_time_to_close_pull_request":414.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.6666666666666666,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/issues","maintainers":[{"login":"dburkhardt","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dburkhardt"},{"login":"dbhaskar92","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"},{"login":"dvdijk","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dvdijk"}],"active_maintainers":[{"login":"dbhaskar92","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkrishnaswamylab%2Fmagic/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkrishnaswamylab%2Fmagic/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkrishnaswamylab%2Fmagic/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fkrishnaswamylab%2Fmagic/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1954234,"maintainers_count":0,"namespaces_count":741771,"keywords_count":109320,"github":"golang","metadata":{"funded_packages_count":49342},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-08T05:47:38.872Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}},{"id":2793573,"name":"magic-impute","ecosystem":"pypi","description":"MAGIC","homepage":"https://github.com/KrishnaswamyLab/MAGIC","licenses":"GNU General Public License Version 2","normalized_licenses":["GPL-1.0"],"repository_url":"https://github.com/KrishnaswamyLab/MAGIC","keywords_array":["visualization","big-data","dimensionality-reduction","embedding","manifold-learning","computational-biology"],"namespace":null,"versions_count":15,"first_release_published_at":"2018-07-24T23:12:27.000Z","latest_release_published_at":"2021-03-11T17:49:40.000Z","latest_release_number":"3.0.0","last_synced_at":"2025-08-03T13:03:49.644Z","created_at":"2022-04-10T11:32:01.848Z","updated_at":"2025-08-03T13:03:49.644Z","registry_url":"https://pypi.org/project/magic-impute/","install_command":"pip install magic-impute --index-url https://pypi.org/simple","documentation_url":"https://magic-impute.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 5 - Production/Stable","Environment :: Console","Framework :: Jupyter","Intended Audience :: Developers","Intended Audience :: Science/Research","Natural Language :: English","Operating System :: MacOS :: MacOS X","Operating System :: Microsoft :: Windows","Operating System :: POSIX :: Linux","Programming Language :: Python :: 2","Programming Language :: Python :: 2.7","Programming Language :: Python :: 3","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"magic-impute"},"repo_metadata":{"id":50749226,"uuid":"64703305","full_name":"KrishnaswamyLab/MAGIC","owner":"KrishnaswamyLab","description":"MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.","archived":false,"fork":false,"pushed_at":"2024-10-03T21:50:55.000Z","size":226856,"stargazers_count":362,"open_issues_count":33,"forks_count":96,"subscribers_count":21,"default_branch":"master","last_synced_at":"2025-05-30T12:29:34.333Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KrishnaswamyLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-08-01T21:35:39.000Z","updated_at":"2025-05-25T09:28:08.000Z","dependencies_parsed_at":"2025-04-08T23:43:07.737Z","dependency_job_id":null,"html_url":"https://github.com/KrishnaswamyLab/MAGIC","commit_stats":null,"previous_names":[],"tags_count":21,"template":false,"template_full_name":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":263264650,"owners_count":23439257,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"KrishnaswamyLab","name":"Krishnaswamy Lab","uuid":"26941417","kind":"organization","description":"","email":"smita.krishnaswamy@yale.edu","website":"https://krishnaswamylab.org","location":"New Haven, CT","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/26941417?v=4","repositories_count":31,"last_synced_at":"2024-12-16T21:32:36.043Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/KrishnaswamyLab","funding_links":[],"total_stars":null,"followers":145,"following":0,"created_at":"2022-11-11T20:32:54.219Z","updated_at":"2024-12-16T21:32:36.043Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrishnaswamyLab/repositories"},"tags":[{"name":"v3.0.0.post1","sha":"3a4ffdbe435716bb3b2fbe78f434c6cdc8dd8d78","kind":"commit","published_at":"2021-03-11T17:48:22.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v3.0.0.post1","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v3.0.0.post1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v3.0.0.post1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v3.0.0.post1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v3.0.0.post1/manifests"},{"name":"v3.0.0","sha":"136169cf46e862a37ed02ef45515a733dd4af56f","kind":"commit","published_at":"2021-03-11T16:54:48.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v3.0.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v3.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v3.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v3.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v3.0.0/manifests"},{"name":"v2.0.4","sha":"0a4f0c6ab88681dd8b99f4e6f7ac55bbe53c09cb","kind":"commit","published_at":"2020-11-02T16:42:04.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v2.0.4","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v2.0.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v2.0.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.4/manifests"},{"name":"v2.0.3","sha":"fae72d9017acbac766d48254da60eb46a118d415","kind":"commit","published_at":"2019-11-18T22:13:45.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v2.0.3","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v2.0.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v2.0.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.3/manifests"},{"name":"v2.0.2","sha":"8b923b6af81bca4dffd29bdfabf3ec172fa93dd3","kind":"commit","published_at":"2019-11-12T18:15:54.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v2.0.2","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v2.0.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v2.0.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.2/manifests"},{"name":"v2.0.1","sha":"2b6a68a0c659575ffe37ba4ad2c313e6bd45d1ce","kind":"commit","published_at":"2019-11-12T16:25:17.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v2.0.1","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v2.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v2.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.1/manifests"},{"name":"v2.0.0","sha":"55c9d891548b53787424c04af6d5168769c7361a","kind":"commit","published_at":"2019-11-12T15:11:04.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v2.0.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v2.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v2.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v2.0.0/manifests"},{"name":"v1.5.7","sha":"5f0c47d4ebc47c52d79d0bf5ab3fbc05f49d8706","kind":"commit","published_at":"2019-10-15T16:33:28.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.5.7","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.5.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.5.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.7/manifests"},{"name":"v1.5.6","sha":"32724af9bc7f86d287ebc65bd4dfae3056b4b18d","kind":"commit","published_at":"2019-10-10T19:55:16.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.5.6","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.5.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.5.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.6/manifests"},{"name":"v1.5.5","sha":"3de3751c47a183626681c9bea147c1954b6ebf5e","kind":"commit","published_at":"2019-04-12T21:57:48.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.5.5","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.5.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.5.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.5/manifests"},{"name":"v1.5.3","sha":"db9c1eb37173e93e23ffdb8e68da32df116118aa","kind":"commit","published_at":"2019-03-18T18:46:30.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.5.3","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.5.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.5.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.3/manifests"},{"name":"v1.5.2","sha":"992fe39c1d268bfc9056770483629c09b4086801","kind":"commit","published_at":"2019-02-23T01:46:17.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.5.2","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.2/manifests"},{"name":"v1.5.1","sha":"df677ff2bff6d91e32bddb0bde8766b82d0ffb2a","kind":"commit","published_at":"2019-02-06T19:11:20.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.5.1","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.5.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.5.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.1/manifests"},{"name":"v1.5.0","sha":"5547e909c4cdb7b1be33366449ce5480f3835978","kind":"commit","published_at":"2019-02-06T18:53:37.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.5.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.5.0/manifests"},{"name":"v1.4.0","sha":"c1fa4ed26b33209966ff6d9879ae9e36966e4464","kind":"commit","published_at":"2018-11-22T17:55:24.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.4.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.4.0/manifests"},{"name":"v1.3.0","sha":"544ec7ef7c2acca34bc8ecec219a0f6fc5dfc333","kind":"commit","published_at":"2018-09-21T21:53:48.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.3.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.3.0/manifests"},{"name":"v1.2.1","sha":"eb3c0b999ba5501c74ab84c050d2a9d8748b96fc","kind":"commit","published_at":"2018-07-24T23:09:24.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.2.1","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.2.1/manifests"},{"name":"v1.2.0","sha":"eb3c0b999ba5501c74ab84c050d2a9d8748b96fc","kind":"commit","published_at":"2018-07-24T23:09:24.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.2.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.2.0/manifests"},{"name":"v1.1.0","sha":"e88d50897f9e5fc8512d71e483755934f47f5b48","kind":"commit","published_at":"2018-07-12T03:24:06.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.1.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.1.0/manifests"},{"name":"v1.0.0","sha":"21f9f768b235e43e83bf0607e8fc4ee888ca6088","kind":"commit","published_at":"2018-06-30T04:54:35.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/v1.0.0","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/v1.0.0/manifests"},{"name":"0.1","sha":"b53d723c05a92405b257c07d4bb85b5ff122df55","kind":"commit","published_at":"2017-03-31T01:29:41.000Z","download_url":"https://codeload.github.com/KrishnaswamyLab/MAGIC/tar.gz/0.1","html_url":"https://github.com/KrishnaswamyLab/MAGIC/releases/tag/0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/KrishnaswamyLab/MAGIC@0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/tags/0.1/manifests"}]},"repo_metadata_updated_at":"2025-07-03T05:05:35.659Z","dependent_packages_count":13,"downloads":1598,"downloads_period":"last-month","dependent_repos_count":22,"rankings":{"downloads":7.182004434233508,"dependent_repos_count":3.1006149948527186,"dependent_packages_count":1.034323787151583,"stargazers_count":3.6614388637850617,"forks_count":4.668739535996173,"docker_downloads_count":1.411745801586588,"average":3.5098112362676055},"purl":"pkg:pypi/magic-impute","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/magic-impute","docker_dependents_count":1,"docker_downloads_count":485,"usage_url":"https://repos.ecosyste.ms/usage/pypi/magic-impute","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/magic-impute/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-05-30T10:43:04.772Z","issues_count":81,"pull_requests_count":32,"avg_time_to_close_issue":5646503.530612245,"avg_time_to_close_pull_request":303939.8064516129,"issues_closed_count":49,"pull_requests_closed_count":31,"pull_request_authors_count":6,"issue_authors_count":73,"avg_comments_per_issue":2.802469135802469,"avg_comments_per_pull_request":0.28125,"merged_pull_requests_count":27,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":37729.0,"past_year_avg_time_to_close_pull_request":414.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.6666666666666666,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/issues","maintainers":[{"login":"dburkhardt","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dburkhardt"},{"login":"dbhaskar92","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"},{"login":"dvdijk","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dvdijk"}],"active_maintainers":[{"login":"dbhaskar92","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/magic-impute/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/magic-impute/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/magic-impute/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/magic-impute/related_packages","maintainers":[{"uuid":"scottgigante","login":"scottgigante","name":null,"email":null,"url":null,"packages_count":9,"html_url":"https://pypi.org/user/scottgigante/","role":null,"created_at":"2023-02-24T06:47:22.757Z","updated_at":"2023-02-24T06:47:22.757Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/scottgigante/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726163,"maintainers_count":308802,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":607177,"full_name":"KrishnaswamyLab/MAGIC","default_branch":"master","committers":[{"name":"Scott Gigante","email":"scottgigante@gmail.com","login":null,"count":374},{"name":"Pooja Kathail","email":"pk2485@columbia.edu","login":null,"count":98},{"name":"Ngan Vu","email":"ngan.vu@yale.edu","login":null,"count":40},{"name":"dvdijk","email":"davidvandijk@gmail.com","login":null,"count":36},{"name":"Manu Setty","email":"manu.talanki@gmail.com","login":null,"count":34},{"name":"Daniel Dager","email":"daniel.dager@yale.edu","login":null,"count":24},{"name":"Daniel Burkhardt","email":"burkhardt.d.b@gmail.com","login":null,"count":10},{"name":"Scott Gigante","email":"scottgigante","login":"scottgigante","count":5},{"name":"Paul Hoffman","email":"phoffman@nygenome.org","login":null,"count":4},{"name":"Ruchira-Ray","email":"37554073+Ruchira-Ray","login":"Ruchira-Ray","count":4},{"name":"github-actions[bot]","email":"41898282+github-actions[bot]","login":"github-actions[bot]","count":4},{"name":"Fabio Zanini","email":"fabio.zanini@fastmail.fm","login":null,"count":3},{"name":"pkathail","email":"pkathail","login":"pkathail","count":2},{"name":"lkmklsmn","email":"lkmklsmn@gmail.com","login":null,"count":1},{"name":"guilhermesena","email":"guilhermesb14@gmail.com","login":null,"count":1},{"name":"EC2 Default User","email":"ec2-user@ip-172-31-29-235.ec2.internal","login":null,"count":1},{"name":"Cao T","email":"charlietang98@gmail.com","login":null,"count":1},{"name":"Alex Tong","email":"alexanderytong@gmail.com","login":null,"count":1},{"name":"Paul Hoffman","email":"mojaveazure","login":"mojaveazure","count":1}],"total_commits":644,"total_committers":19,"total_bot_commits":4,"total_bot_committers":1,"mean_commits":33.89473684210526,"dds":0.4192546583850931,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:16:45.614Z","last_synced_commit":"3a4ffdbe435716bb3b2fbe78f434c6cdc8dd8d78","created_at":"2023-03-09T07:10:19.964Z","updated_at":"2023-10-25T14:16:45.615Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483974,"commits_count":854376010,"contributors_count":31147219,"owners_count":908957,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"KrishnaswamyLab/MAGIC","html_url":"https://github.com/KrishnaswamyLab/MAGIC","last_synced_at":"2025-08-31T19:24:31.339Z","status":null,"issues_count":81,"pull_requests_count":32,"avg_time_to_close_issue":5646503.530612245,"avg_time_to_close_pull_request":303939.8064516129,"issues_closed_count":49,"pull_requests_closed_count":31,"pull_request_authors_count":6,"issue_authors_count":73,"avg_comments_per_issue":2.802469135802469,"avg_comments_per_pull_request":0.28125,"merged_pull_requests_count":27,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":37729.0,"past_year_avg_time_to_close_pull_request":414.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.6666666666666666,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T17:19:17.900Z","updated_at":"2025-09-02T20:38:24.612Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrishnaswamyLab%2FMAGIC/issues","issue_labels_count":{"question":23,"bug":13,"enhancement":3},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":75,"MEMBER":1,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":23,"MEMBER":9,"NONE":1,"COLLABORATOR":1},"issue_authors":{"HHHit":3,"buutrg":2,"yongjieliu":2,"xingzhongyu":2,"MichaelPeibo":2,"abhay0305":2,"scottgigante":1,"zvittorio":1,"Roger-GOAT":1,"prummer":1,"dagarfield":1,"Natacoman":1,"k326xh":1,"saeedfc":1,"AVitriolo":1,"trumt001":1,"JLTrincado":1,"verma014":1,"Gabby4548":1,"ElenaMerinoTejero":1,"LucaTucciarone":1,"Rainshiney":1,"b-dawes":1,"bitcometz":1,"dburkhardt":1,"milanmlft":1,"yaolutian":1,"LJK1991":1,"tallulandrews":1,"bioguy2018":1,"dustincys":1,"ewitt1093":1,"Lesdormis":1,"iichelhadi":1,"nickcicero18":1,"shengyongniu":1,"andbsp":1,"yamajackr":1,"AmitElad":1,"sam-va":1,"tuoliver":1,"kevin199011":1,"mkuchroo":1,"igordot":1,"xxxcha":1,"millersan":1,"Rohit-Satyam":1,"shmohammadi86":1,"elizabethmcmillan":1,"qubit0":1,"DomenicoSkyWalker89":1,"kuang-da":1,"jphfisher":1,"GeniusYx":1,"StefanosVoglis":1,"slowkow":1,"anemartinezlarrinaga2898":1,"WeiCSong":1,"Winnie09":1,"anacarolinaleote":1,"daliabarkley":1,"petrsh":1,"CYZou":1,"ronammar":1,"yxiao832":1,"chlee-tabin":1,"gokceneraslan":1,"surgebiswas":1,"Dangertrip":1,"mheskett":1},"pull_request_authors":{"scottgigante":22,"dburkhardt":5,"dbhaskar92":4,"dvdijk":1,"softbear":1,"mojaveazure":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10167557,"issues_count":32013306,"pull_requests_count":100263684,"authors_count":10729845,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"question":2,"bug":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":3},"past_year_pull_request_author_associations_count":{"MEMBER":2},"past_year_issue_authors":{"xingzhongyu":2,"elizabethmcmillan":1},"past_year_pull_request_authors":{"dbhaskar92":2},"maintainers":[{"login":"dburkhardt","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dburkhardt"},{"login":"dbhaskar92","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"},{"login":"dvdijk","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dvdijk"}],"active_maintainers":[{"login":"dbhaskar92","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dbhaskar92"}]},"events":{"total":{"IssuesEvent":3,"WatchEvent":28,"IssueCommentEvent":3,"ForkEvent":3},"last_year":{"IssuesEvent":3,"WatchEvent":28,"IssueCommentEvent":3,"ForkEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"Rmagic/DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-02T23:52:29.621Z","updated_at":"2022-09-02T23:52:29.621Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/Rmagic/DESCRIPTION","dependencies":[{"id":3641771454,"package_name":"Matrix","ecosystem":"cran","requirements":"\u003e= 1.2","direct":true,"kind":"depends","optional":false},{"id":3641771455,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.3","direct":true,"kind":"depends","optional":false},{"id":3641771456,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3641771457,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3641771458,"package_name":"reticulate","ecosystem":"cran","requirements":"\u003e= 1.4","direct":true,"kind":"imports","optional":false},{"id":3641771459,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3641771460,"package_name":"phateR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3641771461,"package_name":"readr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3641771462,"package_name":"Seurat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false},{"id":3641771463,"package_name":"viridis","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"pypi","filepath":"Rmagic/.pre-commit.r_requirements.txt","sha":null,"kind":"manifest","created_at":"2022-09-02T23:52:29.660Z","updated_at":"2022-09-02T23:52:29.660Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/Rmagic/.pre-commit.r_requirements.txt","dependencies":[{"id":3641772191,"package_name":"docopt","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772192,"package_name":"styler","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772193,"package_name":"git2r","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772194,"package_name":"lintr","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772195,"package_name":"roxygen2","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772196,"package_name":"precommit","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"python/doc/source/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-09-02T23:52:29.684Z","updated_at":"2022-09-02T23:52:29.684Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/python/doc/source/requirements.txt","dependencies":[{"id":3641772197,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.19.1","direct":true,"kind":"runtime","optional":false},{"id":3641772198,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.14.0","direct":true,"kind":"runtime","optional":false},{"id":3641772199,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=0.25","direct":true,"kind":"runtime","optional":false},{"id":3641772200,"package_name":"scprep","ecosystem":"pypi","requirements":"\u003e=1.0","direct":true,"kind":"runtime","optional":false},{"id":3641772201,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.1.0","direct":true,"kind":"runtime","optional":false},{"id":3641772202,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003e=2.0.1","direct":true,"kind":"runtime","optional":false},{"id":3641772203,"package_name":"future","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772204,"package_name":"graphtools","ecosystem":"pypi","requirements":"\u003e=1.0.0","direct":true,"kind":"runtime","optional":false},{"id":3641772205,"package_name":"sphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772206,"package_name":"sphinxcontrib-napoleon","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"python/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-09-02T23:52:29.701Z","updated_at":"2022-09-02T23:52:29.701Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/python/requirements.txt","dependencies":[{"id":3641772207,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.14.0","direct":true,"kind":"runtime","optional":false},{"id":3641772208,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.1.0","direct":true,"kind":"runtime","optional":false},{"id":3641772209,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=0.25","direct":true,"kind":"runtime","optional":false},{"id":3641772210,"package_name":"scprep","ecosystem":"pypi","requirements":"\u003e=1.0","direct":true,"kind":"runtime","optional":false},{"id":3641772211,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772212,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.19.1","direct":true,"kind":"runtime","optional":false},{"id":3641772213,"package_name":"future","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772214,"package_name":"tasklogger","ecosystem":"pypi","requirements":"\u003e=1.0.0","direct":true,"kind":"runtime","optional":false},{"id":3641772215,"package_name":"graphtools","ecosystem":"pypi","requirements":"\u003e=1.4.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"python/setup.py","sha":null,"kind":"manifest","created_at":"2022-09-02T23:52:29.718Z","updated_at":"2022-09-02T23:52:29.718Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/python/setup.py","dependencies":[{"id":3641772243,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.14.0","direct":true,"kind":"runtime","optional":false},{"id":3641772244,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.1.0","direct":true,"kind":"runtime","optional":false},{"id":3641772245,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772246,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.19.1","direct":true,"kind":"runtime","optional":false},{"id":3641772247,"package_name":"future","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3641772248,"package_name":"tasklogger","ecosystem":"pypi","requirements":"\u003e=1.0.0","direct":true,"kind":"runtime","optional":false},{"id":3641772249,"package_name":"graphtools","ecosystem":"pypi","requirements":"\u003e=1.4.0","direct":true,"kind":"runtime","optional":false},{"id":3641772250,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=0.25","direct":true,"kind":"runtime","optional":false},{"id":3641772251,"package_name":"scprep","ecosystem":"pypi","requirements":"\u003e=1.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/deploy.yml","sha":null,"kind":"manifest","created_at":"2025-04-08T23:43:07.425Z","updated_at":"2025-04-08T23:43:07.425Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/.github/workflows/deploy.yml","dependencies":[{"id":22605046983,"package_name":"actions/checkout","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":22605046984,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22605046985,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pre-commit.yml","sha":null,"kind":"manifest","created_at":"2025-04-08T23:43:07.479Z","updated_at":"2025-04-08T23:43:07.479Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/.github/workflows/pre-commit.yml","dependencies":[{"id":22605046986,"package_name":"styfle/cancel-workflow-action","ecosystem":"actions","requirements":"0.6.0","direct":true,"kind":"composite","optional":false},{"id":22605046987,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22605046988,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22605046989,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22605046990,"package_name":"pre-commit/action","ecosystem":"actions","requirements":"v2.0.0","direct":true,"kind":"composite","optional":false},{"id":22605046991,"package_name":"ad-m/github-push-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/run_tests.yml","sha":null,"kind":"manifest","created_at":"2025-04-08T23:43:07.533Z","updated_at":"2025-04-08T23:43:07.533Z","repository_link":"https://github.com/KrishnaswamyLab/MAGIC/blob/master/.github/workflows/run_tests.yml","dependencies":[{"id":22605046992,"package_name":"styfle/cancel-workflow-action","ecosystem":"actions","requirements":"0.6.0","direct":true,"kind":"composite","optional":false},{"id":22605046993,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22605046994,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22605046995,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22605046996,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":22605046997,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":22605046998,"package_name":"r-lib/actions/setup-tinytex","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":16.585024558086978,"created_at":"2025-09-08T11:18:59.811Z","updated_at":"2025-10-07T08:25:42.528Z","avatar_url":"https://github.com/KrishnaswamyLab.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":1598,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioinformatics","human-cell-atlas","single-cell-genomics","single-cell-rna-seq","scrna-seq-analysis","report","autograder","hack","animal","standardization"],"project_url":"https://science.ecosyste.ms/api/v1/projects/69120","html_url":"https://science.ecosyste.ms/projects/69120"}