{"id":69646,"name":"plasflow","description":"Software for prediction of plasmid sequences in metagenomic assemblies","url":"https://github.com/smaegol/plasflow","last_synced_at":"2025-09-08T14:54:48.687Z","repository":{"id":49109872,"uuid":"78748754","full_name":"smaegol/PlasFlow","owner":"smaegol","description":"Software for prediction of plasmid sequences in metagenomic assemblies","archived":false,"fork":false,"pushed_at":"2021-06-28T17:00:50.000Z","size":39513,"stargazers_count":105,"open_issues_count":17,"forks_count":28,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-08-30T01:22:48.986Z","etag":null,"topics":["classification","contigs","fasta","metagenome","metagenome-assembly","metagenomes","plasflow","plasmid","plasmid-sequences","plasmids","prediction","tensorflow"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/smaegol.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-01-12T13:35:45.000Z","updated_at":"2025-08-18T01:52:23.000Z","dependencies_parsed_at":"2022-09-17T00:01:22.235Z","dependency_job_id":null,"html_url":"https://github.com/smaegol/PlasFlow","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/smaegol/PlasFlow","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smaegol","download_url":"https://codeload.github.com/smaegol/PlasFlow/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/sbom","scorecard":{"id":832271,"data":{"date":"2025-08-11","repo":{"name":"github.com/smaegol/PlasFlow","commit":"45604ff637c65f709dabff63e665fa60896be241"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.2,"checks":[{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Code-Review","score":1,"reason":"Found 2/14 approved changesets -- score normalized to 1","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 19 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-23T18:03:44.726Z","repository_id":49109872,"created_at":"2025-08-23T18:03:44.726Z","updated_at":"2025-08-23T18:03:44.726Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274202487,"owners_count":25240368,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"smaegol","name":"Pawel Krawczyk","uuid":"17924760","kind":"user","description":"I am interested in the analysis of all kinds of NGS data, from metagenomics and bacterial genomics, to transcriptomics, TAILseq and long-read sequencing data","email":"","website":null,"location":"Warsaw, Poland","twitter":null,"company":"International Institute of Molecular and Cell BIology","icon_url":"https://avatars.githubusercontent.com/u/17924760?u=a3b204c72ef17b75d0c79d770d649fce76de645d\u0026v=4","repositories_count":2,"last_synced_at":"2023-06-07T12:25:30.876Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/smaegol","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-06-07T12:25:30.877Z","updated_at":"2023-06-07T12:25:30.877Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smaegol","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smaegol/repositories"},"packages":[{"id":2853912,"name":"plasflow","ecosystem":"pypi","description":"PlasFlow - predicting plasmid sequences in metagenomic data","homepage":"https://github.com/smaegol/PlasFlow","licenses":"GPLv3+","normalized_licenses":["GPL-3.0+"],"repository_url":"https://github.com/smaegol/PlasFlow","keywords_array":["plasmid","metagenome","genome","signature","ML"],"namespace":null,"versions_count":4,"first_release_published_at":"2017-11-03T09:58:53.000Z","latest_release_published_at":"2018-05-25T12:43:20.000Z","latest_release_number":"1.1.0","last_synced_at":"2025-08-30T01:02:11.569Z","created_at":"2022-04-10T12:03:59.504Z","updated_at":"2025-08-30T01:36:50.451Z","registry_url":"https://pypi.org/project/plasflow/","install_command":"pip install plasflow --index-url https://pypi.org/simple","documentation_url":"https://plasflow.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 5 - Production/Stable","Environment :: Console","Intended Audience :: Science/Research","License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)","Operating System :: POSIX","Programming Language :: Python :: 3","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"plasflow","project_status":null},"repo_metadata":{"id":49109872,"uuid":"78748754","full_name":"smaegol/PlasFlow","owner":"smaegol","description":"Software for prediction of plasmid sequences in metagenomic assemblies","archived":false,"fork":false,"pushed_at":"2021-06-28T17:00:50.000Z","size":39513,"stargazers_count":104,"open_issues_count":17,"forks_count":28,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-07-21T11:49:30.042Z","etag":null,"topics":["classification","contigs","fasta","metagenome","metagenome-assembly","metagenomes","plasflow","plasmid","plasmid-sequences","plasmids","prediction","tensorflow"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/smaegol.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-01-12T13:35:45.000Z","updated_at":"2025-07-10T17:31:29.000Z","dependencies_parsed_at":"2022-09-17T00:01:22.235Z","dependency_job_id":null,"html_url":"https://github.com/smaegol/PlasFlow","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/smaegol/PlasFlow","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smaegol","download_url":"https://codeload.github.com/smaegol/PlasFlow/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/sbom","scorecard":{"id":832271,"data":{"date":"2025-08-11","repo":{"name":"github.com/smaegol/PlasFlow","commit":"45604ff637c65f709dabff63e665fa60896be241"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.2,"checks":[{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Code-Review","score":1,"reason":"Found 2/14 approved changesets -- score normalized to 1","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 19 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-23T18:03:44.726Z","repository_id":49109872,"created_at":"2025-08-23T18:03:44.726Z","updated_at":"2025-08-23T18:03:44.726Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272789933,"owners_count":24993399,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-29T02:00:10.610Z","response_time":87,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"smaegol","name":"Pawel Krawczyk","uuid":"17924760","kind":"user","description":"I am interested in the analysis of all kinds of NGS data, from metagenomics and bacterial genomics, to transcriptomics, TAILseq and long-read sequencing data","email":"","website":null,"location":"Warsaw, Poland","twitter":null,"company":"International Institute of Molecular and Cell BIology","icon_url":"https://avatars.githubusercontent.com/u/17924760?u=a3b204c72ef17b75d0c79d770d649fce76de645d\u0026v=4","repositories_count":2,"last_synced_at":"2023-06-07T12:25:30.876Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/smaegol","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-06-07T12:25:30.877Z","updated_at":"2023-06-07T12:25:30.877Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smaegol","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smaegol/repositories"},"tags":[{"name":"v1.1","sha":"13dec863fb9e70806834a5f2036435f78d7f1f1d","kind":"commit","published_at":"2018-05-25T11:18:22.000Z","download_url":"https://codeload.github.com/smaegol/PlasFlow/tar.gz/v1.1","html_url":"https://github.com/smaegol/PlasFlow/releases/tag/v1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/smaegol/PlasFlow@v1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/tags/v1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/tags/v1.1/manifests"},{"name":"v1.0.7","sha":"8612e34af10ef2a7cb1a51c35581984c5d9b2983","kind":"commit","published_at":"2017-11-03T13:32:25.000Z","download_url":"https://codeload.github.com/smaegol/PlasFlow/tar.gz/v1.0.7","html_url":"https://github.com/smaegol/PlasFlow/releases/tag/v1.0.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/smaegol/PlasFlow@v1.0.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/tags/v1.0.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/tags/v1.0.7/manifests"}]},"repo_metadata_updated_at":"2025-08-30T01:36:50.451Z","dependent_packages_count":0,"downloads":54,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":28.2912334532928,"dependent_repos_count":21.544734775075646,"dependent_packages_count":10.119285352930213,"stargazers_count":7.6136030824119185,"forks_count":7.390051634129875,"docker_downloads_count":null,"average":14.99178165956809},"purl":"pkg:pypi/plasflow","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/plasflow","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/plasflow","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/plasflow/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-21T11:32:23.642Z","issues_count":42,"pull_requests_count":7,"avg_time_to_close_issue":3848668.72,"avg_time_to_close_pull_request":12347168.285714285,"issues_closed_count":25,"pull_requests_closed_count":7,"pull_request_authors_count":3,"issue_authors_count":35,"avg_comments_per_issue":1.880952380952381,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":6,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/issues","maintainers":[{"login":"smaegol","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/smaegol"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/plasflow/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/plasflow/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/plasflow/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/plasflow/related_packages","maintainers":[{"uuid":"smaegol","login":"smaegol","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/smaegol/","role":null,"created_at":"2023-02-25T00:57:51.278Z","updated_at":"2023-02-25T00:57:51.278Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/smaegol/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726167,"maintainers_count":308802,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":629993,"full_name":"smaegol/PlasFlow","default_branch":"master","committers":[{"name":"smaegol","email":"p.krawczyk@ibb.waw.pl","login":"smaegol","count":59},{"name":"David Danko","email":"dcdanko@gmail.com","login":"dcdanko","count":13},{"name":"Pawel Krawczyk","email":"smaegol@baron.adz.ibb.waw.pl","login":null,"count":7},{"name":"Gopal Peddinti","email":"cugopal@gmail.com","login":"gopalpeddinti","count":1}],"total_commits":80,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":20.0,"dds":0.26249999999999996,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-07-21T12:24:58.860Z","last_synced_commit":"45604ff637c65f709dabff63e665fa60896be241","created_at":"2023-03-09T08:20:47.430Z","updated_at":"2025-07-21T12:24:58.860Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483992,"commits_count":854420992,"contributors_count":31151709,"owners_count":909079,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"smaegol/PlasFlow","html_url":"https://github.com/smaegol/PlasFlow","last_synced_at":"2025-08-30T01:17:51.188Z","status":"error","issues_count":42,"pull_requests_count":7,"avg_time_to_close_issue":3848668.72,"avg_time_to_close_pull_request":12347168.285714285,"issues_closed_count":25,"pull_requests_closed_count":7,"pull_request_authors_count":3,"issue_authors_count":35,"avg_comments_per_issue":1.880952380952381,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":6,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T20:16:48.901Z","updated_at":"2025-08-31T00:11:17.047Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/smaegol%2FPlasFlow/issues","issue_labels_count":{"help wanted":4,"question":3,"enhancement":2,"bug":1,"wontfix":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":40,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"OWNER":5,"CONTRIBUTOR":2},"issue_authors":{"BurinkiWU":3,"Timmywang1":3,"HuRef":2,"SaraiFinks":2,"jpjh":1,"wanjinhu":1,"ilkaybuysal":1,"lisa4109":1,"lowandrew":1,"ltcall":1,"orctyr":1,"dpellow":1,"DianaKarina":1,"yuxuanlan":1,"jnesme":1,"csawye01":1,"dcdanko":1,"sustc-xylab":1,"tenguzame":1,"astrophys":1,"lmsolden":1,"yzzhang68":1,"Xiaohui-Z":1,"Arzhura":1,"Riselya":1,"dgkurt":1,"5658www638":1,"Handymanalan":1,"wangyujie000":1,"feilongzh":1,"kmdgr123":1,"cinaljess":1,"bernt-matthias":1,"bfjia":1,"palomo11":1},"pull_request_authors":{"smaegol":5,"gopalpeddinti":1,"dcdanko":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10026604,"issues_count":30445490,"pull_requests_count":90339401,"authors_count":10305781,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"kmdgr123":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"smaegol","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/smaegol"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":6,"IssueCommentEvent":2},"last_year":{"IssuesEvent":1,"WatchEvent":6,"IssueCommentEvent":2}},"keywords":["classification","contigs","fasta","metagenome","metagenome-assembly","metagenomes","plasflow","plasmid","plasmid-sequences","plasmids","prediction","tensorflow"],"dependencies":[],"score":10.215667096588296,"created_at":"2025-09-08T11:19:03.231Z","updated_at":"2025-10-07T08:25:48.110Z","avatar_url":"https://github.com/smaegol.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":54,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/nar/gkx1321"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/69646","html_url":"https://science.ecosyste.ms/projects/69646"}