{"id":70035,"name":"pymummer","description":"Python3 module for running MUMmer and reading the output","url":"https://github.com/sanger-pathogens/pymummer","last_synced_at":"2025-09-08T14:59:16.943Z","repository":{"id":25904821,"uuid":"29345507","full_name":"sanger-pathogens/pymummer","owner":"sanger-pathogens","description":"Python3 module for running MUMmer and reading the output","archived":false,"fork":false,"pushed_at":"2025-03-24T10:01:09.000Z","size":110,"stargazers_count":33,"open_issues_count":4,"forks_count":10,"subscribers_count":12,"default_branch":"master","last_synced_at":"2025-07-31T18:39:26.067Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sanger-pathogens.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-16T11:19:43.000Z","updated_at":"2025-06-05T22:41:01.000Z","dependencies_parsed_at":"2022-08-24T14:16:39.928Z","dependency_job_id":null,"html_url":"https://github.com/sanger-pathogens/pymummer","commit_stats":null,"previous_names":[],"tags_count":18,"template":false,"template_full_name":null,"purl":"pkg:github/sanger-pathogens/pymummer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanger-pathogens","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/sbom","scorecard":{"id":799475,"data":{"date":"2025-08-11","repo":{"name":"github.com/sanger-pathogens/pymummer","commit":"aee67166f959d9fbc5eaa666d9a3b604c8415dc0"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.4,"checks":[{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Code-Review","score":3,"reason":"Found 3/10 approved changesets -- score normalized to 3","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":9,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Warn: project license file does not contain an FSF or OSI license."],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 29 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-23T09:59:26.844Z","repository_id":25904821,"created_at":"2025-08-23T09:59:26.844Z","updated_at":"2025-08-23T09:59:26.844Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274202747,"owners_count":25240371,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"sanger-pathogens","name":"Pathogen Informatics, Wellcome Sanger Institute","uuid":"130803","kind":"organization","description":"","email":null,"website":"http://www.sanger.ac.uk/science/groups/pathogen-informatics","location":"Hinxton, Cambs., UK","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/130803?v=4","repositories_count":54,"last_synced_at":"2023-03-10T20:02:30.795Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sanger-pathogens","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T19:14:58.846Z","updated_at":"2023-03-10T20:02:30.802Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanger-pathogens","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanger-pathogens/repositories"},"packages":[{"id":2877072,"name":"pymummer","ecosystem":"pypi","description":"Wrapper for MUMmer","homepage":null,"licenses":"GPLv3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/sanger-pathogens/pymummer","keywords_array":[],"namespace":null,"versions_count":17,"first_release_published_at":"2015-02-02T16:07:08.000Z","latest_release_published_at":"2025-03-24T10:00:14.000Z","latest_release_number":"0.12.0","last_synced_at":"2025-07-31T16:33:36.925Z","created_at":"2022-04-10T12:15:36.151Z","updated_at":"2025-07-31T16:37:34.772Z","registry_url":"https://pypi.org/project/pymummer/","install_command":"pip install pymummer --index-url https://pypi.org/simple","documentation_url":"https://pymummer.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 4 - Beta","License :: OSI Approved :: GNU General Public License v3 (GPLv3)","Programming Language :: Python :: 3 :: Only","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"pymummer"},"repo_metadata":{"id":25904821,"uuid":"29345507","full_name":"sanger-pathogens/pymummer","owner":"sanger-pathogens","description":"Python3 module for running MUMmer and reading the output","archived":false,"fork":false,"pushed_at":"2025-03-24T10:01:09.000Z","size":110,"stargazers_count":33,"open_issues_count":4,"forks_count":10,"subscribers_count":12,"default_branch":"master","last_synced_at":"2025-06-27T04:05:30.571Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sanger-pathogens.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-16T11:19:43.000Z","updated_at":"2025-06-05T22:41:01.000Z","dependencies_parsed_at":"2022-08-24T14:16:39.928Z","dependency_job_id":null,"html_url":"https://github.com/sanger-pathogens/pymummer","commit_stats":null,"previous_names":[],"tags_count":18,"template":false,"template_full_name":null,"purl":"pkg:github/sanger-pathogens/pymummer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanger-pathogens","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":268072867,"owners_count":24191368,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-31T02:00:08.723Z","response_time":66,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"sanger-pathogens","name":"Pathogen Informatics, Wellcome Sanger Institute","uuid":"130803","kind":"organization","description":"","email":null,"website":"http://www.sanger.ac.uk/science/groups/pathogen-informatics","location":"Hinxton, Cambs., UK","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/130803?v=4","repositories_count":54,"last_synced_at":"2023-03-10T20:02:30.795Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sanger-pathogens","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T19:14:58.846Z","updated_at":"2023-03-10T20:02:30.802Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanger-pathogens","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanger-pathogens/repositories"},"tags":[{"name":"v0.11.0","sha":"fd97bccfbae62719a7247473d73dd6733d4fa903","kind":"commit","published_at":"2019-02-28T10:31:29.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.11.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.11.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.11.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.11.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.11.0/manifests"},{"name":"v0.10.3","sha":"663369862b9c6d02da77d6a5dd22dba8e467422e","kind":"commit","published_at":"2017-08-21T14:13:40.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.10.3","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.10.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.10.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.3/manifests"},{"name":"v0.10.2","sha":"006b59b597729895799b342cbb35376ebd3e534b","kind":"commit","published_at":"2017-02-02T11:53:34.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.10.2","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.10.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.10.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.2/manifests"},{"name":"v0.10.1","sha":"f9e01c5e6e644602d705ee0ff069de98eba98ccd","kind":"commit","published_at":"2016-11-18T10:40:14.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.10.1","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.10.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.10.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.1/manifests"},{"name":"v0.10.0","sha":"53ee96eaa3306988bb441299b8c07d52392ccc02","kind":"commit","published_at":"2016-11-15T11:10:52.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.10.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.10.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.10.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.10.0/manifests"},{"name":"v0.9.0","sha":"3c1dee644dd033f12d9a7f8d56515db1387fc198","kind":"commit","published_at":"2016-10-17T09:25:53.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.9.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.9.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.9.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.9.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.9.0/manifests"},{"name":"v0.8.1","sha":"e25a59ea91ffc7c936678ec713996a34e59a2024","kind":"commit","published_at":"2016-08-23T14:06:43.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.8.1","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.8.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.8.1/manifests"},{"name":"v0.8.0","sha":"f8202f41bfaf9fa33e0bd490dcfac4edf0b9e8c5","kind":"commit","published_at":"2016-08-23T13:29:16.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.8.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.8.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.8.0/manifests"},{"name":"v0.7.1","sha":"de888d6b57781a8f1409b1391a75688976616c73","kind":"commit","published_at":"2016-04-18T15:00:04.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.7.1","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.7.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.7.1/manifests"},{"name":"v0.7.0","sha":"8c02053206a74f0c3ac4181b32735c04cec96df3","kind":"commit","published_at":"2016-02-09T11:43:37.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.7.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.7.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.7.0/manifests"},{"name":"v0.6.1","sha":"64ac2d6acf49b4b5821985214d3d695b73e89bf1","kind":"commit","published_at":"2015-10-19T08:15:46.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.6.1","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.6.1/manifests"},{"name":"v0.6.0","sha":"4f7b682aa03bf814b28f6f02b73d8d357e499aa4","kind":"commit","published_at":"2015-10-14T07:46:42.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.6.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.6.0/manifests"},{"name":"v0.5.0","sha":"0da064103072ff37db14ef6efdf152713a539cfe","kind":"commit","published_at":"2015-10-09T16:04:22.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.5.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.5.0/manifests"},{"name":"v0.4.0","sha":"7f41bfbf8faded0c254141419b33f70d79bb3e20","kind":"commit","published_at":"2015-05-28T10:26:21.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.4.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.4.0/manifests"},{"name":"v0.3.0","sha":"42fa8dac3d289f1ef1fb712f0bb7d76aff8afd13","kind":"commit","published_at":"2015-05-15T07:16:37.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.3.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.3.0/manifests"},{"name":"v0.2.0","sha":"42fa8dac3d289f1ef1fb712f0bb7d76aff8afd13","kind":"commit","published_at":"2015-05-15T07:16:37.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.2.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.2.0/manifests"},{"name":"v0.1.0","sha":"d66e45bf6ece83230ee38dd06f32cb2b8184634b","kind":"commit","published_at":"2015-03-05T13:43:40.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.1.0","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.1.0/manifests"},{"name":"v0.0.2","sha":"12748ded0c499e69e2e5bebe920ada6366641314","kind":"commit","published_at":"2015-02-02T16:05:04.000Z","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/v0.0.2","html_url":"https://github.com/sanger-pathogens/pymummer/releases/tag/v0.0.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sanger-pathogens/pymummer@v0.0.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.0.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags/v0.0.2/manifests"}]},"repo_metadata_updated_at":"2025-07-31T16:37:34.771Z","dependent_packages_count":0,"downloads":1054,"downloads_period":"last-month","dependent_repos_count":17,"rankings":{"downloads":12.816886000687077,"dependent_repos_count":3.5177508493206395,"dependent_packages_count":10.002282794063202,"stargazers_count":12.435330564640662,"forks_count":10.522822531915098,"docker_downloads_count":1.1954613901650666,"average":8.415089021798623},"purl":"pkg:pypi/pymummer","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/pymummer","docker_dependents_count":1,"docker_downloads_count":6888,"usage_url":"https://repos.ecosyste.ms/usage/pypi/pymummer","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/pymummer/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-06-27T06:02:37.686Z","issues_count":7,"pull_requests_count":34,"avg_time_to_close_issue":44081300.0,"avg_time_to_close_pull_request":2307036.117647059,"issues_closed_count":3,"pull_requests_closed_count":34,"pull_request_authors_count":7,"issue_authors_count":6,"avg_comments_per_issue":1.8571428571428572,"avg_comments_per_pull_request":0.23529411764705882,"merged_pull_requests_count":33,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":79339.0,"past_year_avg_time_to_close_pull_request":42277.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":4.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pymummer/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pymummer/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pymummer/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pymummer/related_packages","maintainers":[{"uuid":"sanger-pathogens","login":"sanger-pathogens","name":null,"email":null,"url":null,"packages_count":13,"html_url":"https://pypi.org/user/sanger-pathogens/","role":null,"created_at":"2023-02-25T04:37:45.699Z","updated_at":"2023-02-25T04:37:45.699Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/sanger-pathogens/packages"},{"uuid":"martinghunt","login":"martinghunt","name":null,"email":null,"url":null,"packages_count":11,"html_url":"https://pypi.org/user/martinghunt/","role":null,"created_at":"2023-02-25T04:37:45.670Z","updated_at":"2023-02-25T04:37:45.670Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/martinghunt/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726167,"maintainers_count":308804,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}},{"id":8860238,"name":"py-pymummer","ecosystem":"spack","description":"Python3 module for running MUMmer and reading the output\n","homepage":"https://github.com/sanger-pathogens/pymummer","licenses":"[]","normalized_licenses":["Other"],"repository_url":"https://github.com/sanger-pathogens/pymummer","keywords_array":[],"namespace":null,"versions_count":10,"first_release_published_at":"2024-02-05T05:18:46.193Z","latest_release_published_at":"2024-02-05T05:18:46.193Z","latest_release_number":"0.11.0","last_synced_at":"2025-08-31T04:01:43.412Z","created_at":"2024-02-05T05:18:45.707Z","updated_at":"2025-08-31T04:01:43.412Z","registry_url":"https://packages.spack.io/package.html?name=py-pymummer","install_command":"spack install py-pymummer","documentation_url":null,"metadata":{},"repo_metadata":{"uuid":"29345507","full_name":"sanger-pathogens/pymummer","owner":"sanger-pathogens","description":"Python3 module for running MUMmer and reading the output","archived":false,"fork":false,"pushed_at":"2022-06-15T03:15:14.000Z","size":84,"stargazers_count":25,"open_issues_count":5,"forks_count":11,"subscribers_count":15,"default_branch":"master","last_synced_at":"2023-11-20T12:20:26.834Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sanger-pathogens.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-16T11:19:43.000Z","updated_at":"2023-11-18T16:58:48.000Z","dependencies_parsed_at":"2022-08-24T14:16:39.928Z","dependency_job_id":null,"html_url":"https://github.com/sanger-pathogens/pymummer","commit_stats":null,"previous_names":[],"tags_count":18,"template":null,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanger-pathogens","download_url":"https://codeload.github.com/sanger-pathogens/pymummer/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":184451479,"owners_count":11524693,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"repo_metadata_updated_at":"2024-02-05T05:18:46.923Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":0.0,"dependent_packages_count":57.29632945389436,"stargazers_count":25.012787723785166,"forks_count":24.62915601023018,"docker_downloads_count":null,"average":26.734568296977425},"purl":"pkg:spack/py-pymummer","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/spack/py-pymummer","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/spack/py-pymummer","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/spack/py-pymummer/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2023-11-20T12:20:30.021Z","issues_count":5,"pull_requests_count":33,"avg_time_to_close_issue":15997469.0,"avg_time_to_close_pull_request":72353.78125,"issues_closed_count":1,"pull_requests_closed_count":32,"pull_request_authors_count":7,"issue_authors_count":5,"avg_comments_per_issue":1.2,"avg_comments_per_pull_request":0.06060606060606061,"merged_pull_requests_count":31,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/issues"},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-pymummer/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-pymummer/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-pymummer/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-pymummer/related_packages","maintainers":[{"uuid":"adamjstewart","login":"adamjstewart","name":null,"email":null,"url":"https://github.com/adamjstewart","packages_count":2170,"html_url":null,"role":null,"created_at":"2024-02-05T05:18:46.864Z","updated_at":"2024-02-05T05:18:46.864Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/maintainers/adamjstewart/packages"}],"registry":{"name":"spack.io","url":"https://packages.spack.io","ecosystem":"spack","default":true,"packages_count":8772,"maintainers_count":926,"namespaces_count":0,"keywords_count":3681,"github":"spack","metadata":{"funded_packages_count":405},"icon_url":"https://github.com/spack.png","created_at":"2022-04-04T15:19:23.514Z","updated_at":"2025-09-08T06:56:36.288Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/namespaces"}}],"commits":{"id":638724,"full_name":"sanger-pathogens/pymummer","default_branch":"master","committers":[{"name":"martinghunt","email":"martin.g.hunt@gmail.com","login":null,"count":37},{"name":"Martin Hunt","email":"mh12@sanger.ac.uk","login":null,"count":18},{"name":"Ben Taylor","email":"ben.taylor@sanger.ac.uk","login":null,"count":5},{"name":"nds","email":"nds@sanger.ac.uk","login":null,"count":5},{"name":"Sara Sjunnebo","email":"ss44@sanger.ac.uk","login":null,"count":3},{"name":"andrewjpage","email":"andrewjpage@gmail.com","login":null,"count":2},{"name":"Adam Taranto","email":"adam.p.taranto@gmail.com","login":null,"count":1}],"total_commits":71,"total_committers":7,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":10.142857142857142,"dds":0.47887323943661975,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:38:39.137Z","last_synced_commit":"fd97bccfbae62719a7247473d73dd6733d4fa903","created_at":"2023-03-09T08:46:00.412Z","updated_at":"2023-10-25T14:38:39.138Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483992,"commits_count":854420992,"contributors_count":31151709,"owners_count":909079,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"sanger-pathogens/pymummer","html_url":"https://github.com/sanger-pathogens/pymummer","last_synced_at":"2025-07-31T16:42:44.805Z","status":"error","issues_count":7,"pull_requests_count":34,"avg_time_to_close_issue":44081300.0,"avg_time_to_close_pull_request":2307036.117647059,"issues_closed_count":3,"pull_requests_closed_count":34,"pull_request_authors_count":7,"issue_authors_count":6,"avg_comments_per_issue":1.8571428571428572,"avg_comments_per_pull_request":0.23529411764705882,"merged_pull_requests_count":33,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":79339.0,"past_year_avg_time_to_close_pull_request":42277.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":4.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2023-05-14T21:32:30.280Z","updated_at":"2025-09-02T18:42:12.524Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fpymummer/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":4,"CONTRIBUTOR":2},"pull_request_author_associations_count":{"CONTRIBUTOR":34,"NONE":2},"issue_authors":{"Adamtaranto":2,"wlh1234":1,"notestaff":1,"mthang":1,"zmunro":1},"pull_request_authors":{"martinghunt":22,"nds":4,"ssjunnebo":3,"Adamtaranto":3,"rpetit3":2,"bewt85":1,"nagesh4193":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10167544,"issues_count":32012554,"pull_requests_count":100260947,"authors_count":10729845,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"CONTRIBUTOR":2},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":2},"past_year_issue_authors":{"Adamtaranto":2},"past_year_pull_request_authors":{"Adamtaranto":2},"maintainers":[],"active_maintainers":[]},"events":{"total":{"CreateEvent":1,"ReleaseEvent":1,"IssuesEvent":3,"WatchEvent":7,"IssueCommentEvent":11,"MemberEvent":2,"PushEvent":2,"PullRequestEvent":3},"last_year":{"CreateEvent":1,"ReleaseEvent":1,"IssuesEvent":3,"WatchEvent":7,"IssueCommentEvent":11,"MemberEvent":2,"PushEvent":2,"PullRequestEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-24T14:16:39.836Z","updated_at":"2022-08-24T14:16:39.836Z","repository_link":"https://github.com/sanger-pathogens/pymummer/blob/master/setup.py","dependencies":[{"id":2504910500,"package_name":"pyfastaq","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":14.539389153956982,"created_at":"2025-09-08T11:19:05.842Z","updated_at":"2025-10-07T08:25:52.497Z","avatar_url":"https://github.com/sanger-pathogens.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":1054,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioinformatics","genomics","bioinformatics-pipeline","global-health","infectious-diseases","next-generation-sequencing","pathogen","research","sequencing","telomere"],"project_url":"https://science.ecosyste.ms/api/v1/projects/70035","html_url":"https://science.ecosyste.ms/projects/70035"}