{"id":70087,"name":"pyscenic","description":"pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.","url":"https://github.com/aertslab/pyscenic","last_synced_at":"2025-09-08T15:00:34.732Z","repository":{"id":38291162,"uuid":"124243757","full_name":"aertslab/pySCENIC","owner":"aertslab","description":"pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.","archived":false,"fork":false,"pushed_at":"2025-06-26T09:57:37.000Z","size":36493,"stargazers_count":533,"open_issues_count":230,"forks_count":195,"subscribers_count":17,"default_branch":"master","last_synced_at":"2025-08-27T06:15:23.843Z","etag":null,"topics":["gene-regulatory-network","single-cell","transcription-factors","transcriptomics"],"latest_commit_sha":null,"homepage":"http://scenic.aertslab.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/aertslab.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-03-07T13:57:49.000Z","updated_at":"2025-08-23T23:41:40.000Z","dependencies_parsed_at":"2024-04-08T08:53:24.681Z","dependency_job_id":null,"html_url":"https://github.com/aertslab/pySCENIC","commit_stats":{"total_commits":613,"total_committers":18,"mean_commits":34.05555555555556,"dds":0.3849918433931484,"last_synced_commit":"31d51a1625f12fb3c6e92bc48ecc9d401524c22a"},"previous_names":[],"tags_count":79,"template":false,"template_full_name":null,"purl":"pkg:github/aertslab/pySCENIC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aertslab","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/sbom","scorecard":{"id":169193,"data":{"date":"2025-08-11","repo":{"name":"github.com/aertslab/pySCENIC","commit":"06bafba412792f6efa5a552a23bb221cc3bdea1b"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2,"checks":[{"name":"Code-Review","score":0,"reason":"Found 0/30 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":3,"reason":"0 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 3","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"SAST","score":0,"reason":"no SAST tool detected","details":["Warn: no pull requests merged into dev branch"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: containerImage not pinned by hash: Dockerfile:1","Warn: containerImage not pinned by hash: Dockerfile:29","Warn: containerImage not pinned by hash: pyscenic_with_scanpy.Dockerfile:1","Warn: containerImage not pinned by hash: pyscenic_with_scanpy.Dockerfile:14","Warn: pipCommand not pinned by hash: Dockerfile:17","Warn: pipCommand not pinned by hash: Dockerfile:25-27","Warn: pipCommand not pinned by hash: pyscenic_with_scanpy.Dockerfile:12","Info:   0 out of   4 containerImage dependencies pinned","Info:   0 out of   3 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":0,"reason":"20 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2021-387 / PYSEC-2021-871 / PYSEC-2021-872 / GHSA-hwqr-f3v9-hwxr / GHSA-j8fq-86c5-5v2r","Warn: Project is vulnerable to: PYSEC-2023-163 / GHSA-f73w-4m7g-ch9x","Warn: Project is vulnerable to: PYSEC-2018-34 / GHSA-2fc2-6r4j-p65h","Warn: Project is vulnerable to: PYSEC-2021-856 / GHSA-5545-2q6w-2gh6","Warn: Project is vulnerable to: PYSEC-2019-108 / GHSA-9fq2-x9r6-wfmf","Warn: Project is vulnerable to: PYSEC-2018-33 / GHSA-cw6w-4rcx-xphc","Warn: Project is vulnerable to: PYSEC-2021-857 / GHSA-f7c7-j99h-c22f","Warn: Project is vulnerable to: GHSA-fpfv-jqm9-f5jm","Warn: Project is vulnerable to: PYSEC-2017-1 / GHSA-frgw-fgh6-9g52","Warn: Project is vulnerable to: PYSEC-2020-107 / GHSA-jjw5-xxj6-pcv5","Warn: Project is vulnerable to: PYSEC-2024-110 / GHSA-jw8x-6495-233v","Warn: Project is vulnerable to: PYSEC-2020-108","Warn: Project is vulnerable to: PYSEC-2019-156 / GHSA-xp76-357g-9wqq","Warn: Project is vulnerable to: PYSEC-2023-102","Warn: Project is vulnerable to: PYSEC-2023-114","Warn: Project is vulnerable to: PYSEC-2013-22 / GHSA-27x4-j476-jp5f","Warn: Project is vulnerable to: PYSEC-2025-49 / GHSA-5rjg-fvgr-3xxf","Warn: Project is vulnerable to: GHSA-cx63-2mw6-8hw5","Warn: Project is vulnerable to: PYSEC-2022-43012 / GHSA-r9hx-vwmv-q579","Warn: Project is vulnerable to: PYSEC-2017-74"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}}]},"last_synced_at":"2025-08-16T15:55:04.754Z","repository_id":38291162,"created_at":"2025-08-16T15:55:04.754Z","updated_at":"2025-08-16T15:55:04.754Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274202747,"owners_count":25240371,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"aertslab","name":"aertslab","uuid":"3940817","kind":"organization","description":"","email":null,"website":"https://aertslab.org","location":"Leuven, Belgium","twitter":"steinaerts","company":null,"icon_url":"https://avatars.githubusercontent.com/u/3940817?v=4","repositories_count":67,"last_synced_at":"2023-08-17T03:48:41.794Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/aertslab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T11:27:16.413Z","updated_at":"2023-08-17T03:48:49.988Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aertslab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aertslab/repositories"},"packages":[{"id":2882522,"name":"pyscenic","ecosystem":"pypi","description":"Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.","homepage":"https://github.com/aertslab/pySCENIC","licenses":"GPL-3.0+","normalized_licenses":["GPL-3.0+"],"repository_url":"https://github.com/aertslab/pySCENIC","keywords_array":["single-cell","transcriptomics","gene-regulatory-network","transcription-factors"],"namespace":null,"versions_count":63,"first_release_published_at":"2018-03-16T18:46:05.000Z","latest_release_published_at":"2022-11-21T13:08:18.000Z","latest_release_number":"0.12.1","last_synced_at":"2025-08-26T23:20:37.544Z","created_at":"2022-04-10T12:18:19.780Z","updated_at":"2025-08-27T13:58:16.384Z","registry_url":"https://pypi.org/project/pyscenic/","install_command":"pip install pyscenic --index-url https://pypi.org/simple","documentation_url":"https://pyscenic.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 4 - Beta","License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)","Natural Language :: English","Operating System :: POSIX","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Programming Language :: Python :: Implementation :: CPython"],"normalized_name":"pyscenic","project_status":null},"repo_metadata":{"id":38291162,"uuid":"124243757","full_name":"aertslab/pySCENIC","owner":"aertslab","description":"pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.","archived":false,"fork":false,"pushed_at":"2025-06-26T09:57:37.000Z","size":36493,"stargazers_count":533,"open_issues_count":230,"forks_count":195,"subscribers_count":17,"default_branch":"master","last_synced_at":"2025-08-27T06:15:23.843Z","etag":null,"topics":["gene-regulatory-network","single-cell","transcription-factors","transcriptomics"],"latest_commit_sha":null,"homepage":"http://scenic.aertslab.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/aertslab.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-03-07T13:57:49.000Z","updated_at":"2025-08-23T23:41:40.000Z","dependencies_parsed_at":"2024-04-08T08:53:24.681Z","dependency_job_id":null,"html_url":"https://github.com/aertslab/pySCENIC","commit_stats":{"total_commits":613,"total_committers":18,"mean_commits":34.05555555555556,"dds":0.3849918433931484,"last_synced_commit":"31d51a1625f12fb3c6e92bc48ecc9d401524c22a"},"previous_names":[],"tags_count":79,"template":false,"template_full_name":null,"purl":"pkg:github/aertslab/pySCENIC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aertslab","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/sbom","scorecard":{"id":169193,"data":{"date":"2025-08-11","repo":{"name":"github.com/aertslab/pySCENIC","commit":"06bafba412792f6efa5a552a23bb221cc3bdea1b"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2,"checks":[{"name":"Code-Review","score":0,"reason":"Found 0/30 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":3,"reason":"0 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 3","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"SAST","score":0,"reason":"no SAST tool detected","details":["Warn: no pull requests merged into dev branch"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: containerImage not pinned by hash: Dockerfile:1","Warn: containerImage not pinned by hash: Dockerfile:29","Warn: containerImage not pinned by hash: pyscenic_with_scanpy.Dockerfile:1","Warn: containerImage not pinned by hash: pyscenic_with_scanpy.Dockerfile:14","Warn: pipCommand not pinned by hash: Dockerfile:17","Warn: pipCommand not pinned by hash: Dockerfile:25-27","Warn: pipCommand not pinned by hash: pyscenic_with_scanpy.Dockerfile:12","Info:   0 out of   4 containerImage dependencies pinned","Info:   0 out of   3 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":0,"reason":"20 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2021-387 / PYSEC-2021-871 / PYSEC-2021-872 / GHSA-hwqr-f3v9-hwxr / GHSA-j8fq-86c5-5v2r","Warn: Project is vulnerable to: PYSEC-2023-163 / GHSA-f73w-4m7g-ch9x","Warn: Project is vulnerable to: PYSEC-2018-34 / GHSA-2fc2-6r4j-p65h","Warn: Project is vulnerable to: PYSEC-2021-856 / GHSA-5545-2q6w-2gh6","Warn: Project is vulnerable to: PYSEC-2019-108 / GHSA-9fq2-x9r6-wfmf","Warn: Project is vulnerable to: PYSEC-2018-33 / GHSA-cw6w-4rcx-xphc","Warn: Project is vulnerable to: PYSEC-2021-857 / GHSA-f7c7-j99h-c22f","Warn: Project is vulnerable to: GHSA-fpfv-jqm9-f5jm","Warn: Project is vulnerable to: PYSEC-2017-1 / GHSA-frgw-fgh6-9g52","Warn: Project is vulnerable to: PYSEC-2020-107 / GHSA-jjw5-xxj6-pcv5","Warn: Project is vulnerable to: PYSEC-2024-110 / GHSA-jw8x-6495-233v","Warn: Project is vulnerable to: PYSEC-2020-108","Warn: Project is vulnerable to: PYSEC-2019-156 / GHSA-xp76-357g-9wqq","Warn: Project is vulnerable to: PYSEC-2023-102","Warn: Project is vulnerable to: PYSEC-2023-114","Warn: Project is vulnerable to: PYSEC-2013-22 / GHSA-27x4-j476-jp5f","Warn: Project is vulnerable to: PYSEC-2025-49 / GHSA-5rjg-fvgr-3xxf","Warn: Project is vulnerable to: GHSA-cx63-2mw6-8hw5","Warn: Project is vulnerable to: PYSEC-2022-43012 / GHSA-r9hx-vwmv-q579","Warn: Project is vulnerable to: PYSEC-2017-74"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}}]},"last_synced_at":"2025-08-16T15:55:04.754Z","repository_id":38291162,"created_at":"2025-08-16T15:55:04.754Z","updated_at":"2025-08-16T15:55:04.754Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272337944,"owners_count":24916878,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-27T02:00:09.397Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"aertslab","name":"aertslab","uuid":"3940817","kind":"organization","description":"","email":null,"website":"https://aertslab.org","location":"Leuven, Belgium","twitter":"steinaerts","company":null,"icon_url":"https://avatars.githubusercontent.com/u/3940817?v=4","repositories_count":67,"last_synced_at":"2023-08-17T03:48:41.794Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/aertslab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T11:27:16.413Z","updated_at":"2023-08-17T03:48:49.988Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aertslab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aertslab/repositories"},"tags":[{"name":"0.12.1","sha":"ce41b61b6570490949bd12b514e9f6de46d19c1f","kind":"commit","published_at":"2022-11-21T12:46:12.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.12.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.12.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.12.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.12.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.12.1/manifests"},{"name":"0.12.0","sha":"31e8d2fd912cd5e696534d2c263f480d847926a7","kind":"tag","published_at":"2022-08-16T12:35:46.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.12.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.12.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.12.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.12.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.12.0/manifests"},{"name":"0.11.2","sha":"c66455cdc0d736d67963b218a8ebce61dc4eef82","kind":"tag","published_at":"2021-05-07T19:30:13.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.11.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.11.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.11.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.11.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.11.2/manifests"},{"name":"0.11.1","sha":"21d6b180250a21e97c368f031a221e887242fa2d","kind":"commit","published_at":"2021-04-16T14:14:35.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.11.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.11.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.11.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.11.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.11.1/manifests"},{"name":"0.11.0","sha":"001c9ad25f93bb63702de5c3ba52f2f44048d9b2","kind":"tag","published_at":"2021-02-10T13:50:24.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.11.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.11.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.11.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.11.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.11.0/manifests"},{"name":"0.10.4","sha":"436561fd6179ececdf8ae6faa6da3dc4963a11e6","kind":"commit","published_at":"2020-11-24T10:40:43.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.10.4","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.10.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.10.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.4/manifests"},{"name":"0.10.3","sha":"5daccba0dae3a82f764741fcd28779259de7956f","kind":"commit","published_at":"2020-07-17T14:20:01.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.10.3","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.10.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.10.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.3/manifests"},{"name":"0.10.2","sha":"264fc7e2e807a08f8d6a630f913b4ca7ea8a9d59","kind":"commit","published_at":"2020-06-05T10:19:25.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.10.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.10.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.10.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.2/manifests"},{"name":"0.10.1","sha":"0ef011985e4fab9e17915d178f388a334976aaf9","kind":"commit","published_at":"2020-05-17T19:26:07.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.10.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.10.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.10.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.1/manifests"},{"name":"0.10.0","sha":"3de37cbd1925a920e120b586f0eebaff98b408ff","kind":"tag","published_at":"2020-02-27T17:33:52.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.10.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.10.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.10.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.10.0/manifests"},{"name":"0.9.19","sha":"8974d39bef26e3700336d20ffbaa780dd048f0ce","kind":"tag","published_at":"2019-10-09T19:15:13.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.19","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.19","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.19","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.19","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.19/manifests"},{"name":"0.9.18","sha":"affb1d83af403a2fc306bfd188fce02e75fc5f2b","kind":"tag","published_at":"2019-09-25T12:50:54.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.18","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.18","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.18","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.18","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.18/manifests"},{"name":"0.9.17","sha":"f8f3d9a6eee48e2e2784db5c67276a59181a3875","kind":"tag","published_at":"2019-09-19T09:55:30.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.17","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.17","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.17","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.17","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.17/manifests"},{"name":"0.9.16","sha":"937bab084f44185709047b5774674fbeff6a33cc","kind":"tag","published_at":"2019-08-21T11:50:15.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.16","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.16","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.16","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.16","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.16/manifests"},{"name":"0.9.15","sha":"778356f4e0d7b511e6720c128d315a30ce87f179","kind":"tag","published_at":"2019-07-28T18:47:05.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.15","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.15","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.15","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.15","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.15/manifests"},{"name":"0.9.14","sha":"1a7a6f18bbd3ae87bd295ee9cd4111d98d5c0c17","kind":"tag","published_at":"2019-07-12T17:27:10.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.14","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.14","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.14","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.14","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.14/manifests"},{"name":"0.9.13","sha":"105de7ed44a60bf34646a1b5e85db0cd3a6d50ae","kind":"tag","published_at":"2019-07-07T13:41:03.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.13","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.13","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.13","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.13","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.13/manifests"},{"name":"0.9.12","sha":"118f45481b60b6624fa787bb8402e13653d46bd6","kind":"tag","published_at":"2019-07-07T12:32:27.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.12","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.12/manifests"},{"name":"0.9.11","sha":"4f6f4066204d825dcb8ecffb48689660188f4914","kind":"tag","published_at":"2019-06-23T12:14:24.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.11","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.11/manifests"},{"name":"0.9.10","sha":"715a87bb87e0208c4674451bbfae2fba08be756c","kind":"tag","published_at":"2019-06-14T12:40:08.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.10","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.10","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.10","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.10","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.10/manifests"},{"name":"0.9.9","sha":"320f66c8c88f357aa251abc2b15d0e7f3922038b","kind":"tag","published_at":"2019-05-10T18:35:03.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.9","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.9/manifests"},{"name":"0.9.8","sha":"c07dd2ebb1e34a73c8aead788c5ab4d1f71228bd","kind":"tag","published_at":"2019-04-29T19:10:47.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.8","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.8/manifests"},{"name":"0.9.7","sha":"543fdd0270587dcf7805ba2a28f2b1da8397a698","kind":"tag","published_at":"2019-03-21T08:11:29.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.7","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.7/manifests"},{"name":"0.9.6","sha":"d9a2106bfbafa4b03f3452e823efa99bef45bc0a","kind":"tag","published_at":"2019-03-10T07:52:39.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.6","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.6/manifests"},{"name":"0.9.5","sha":"c5e7ef149ab07a38b86c2c8f3db944117fc87c37","kind":"tag","published_at":"2019-02-12T16:07:40.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.5","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.5/manifests"},{"name":"0.9.4","sha":"fd27f4a0fa8caff8ab18372f312fe7d3aca1ad83","kind":"tag","published_at":"2019-01-24T17:45:12.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.4","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.4/manifests"},{"name":"0.9.3","sha":"ca23423fedfc86d032c8ffc3c0160b1cd2a16d10","kind":"tag","published_at":"2019-01-16T19:43:33.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.3","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.3/manifests"},{"name":"0.9.2","sha":"0824283de2ce7ffa728dd48da33d1d81061b884a","kind":"tag","published_at":"2019-01-14T20:05:11.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.2/manifests"},{"name":"0.9.1","sha":"8678f352a888db86840acaa0950f470af90758c7","kind":"tag","published_at":"2018-12-20T10:27:09.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.1/manifests"},{"name":"0.9.0","sha":"447956ba0f2c54b218c351783ab8e9133d1f0848","kind":"tag","published_at":"2018-12-18T12:33:52.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.9.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.9.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.9.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.9.0/manifests"},{"name":"0.8.16","sha":"e1c470d9a687637091b98cf20abe5ed47baa2784","kind":"tag","published_at":"2018-12-04T13:13:30.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.16","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.16","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.16","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.16","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.16/manifests"},{"name":"0.8.15","sha":"10368b97af2574a40ea9562da3a0a32f571e9c5a","kind":"tag","published_at":"2018-12-04T12:10:19.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.15","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.15","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.15","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.15","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.15/manifests"},{"name":"0.8.14","sha":"c56f83f5f7cde600764d13d3c4cfc84ff0eb23ef","kind":"tag","published_at":"2018-11-29T12:50:03.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.14","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.14","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.14","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.14","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.14/manifests"},{"name":"0.8.13","sha":"e4cd5f9387697fa1044c3828c7b5e2191ac53b24","kind":"tag","published_at":"2018-11-28T20:01:10.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.13","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.13","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.13","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.13","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.13/manifests"},{"name":"0.8.12","sha":"8c3ab67f1b3102b2db5b3222fb845a35846abdb3","kind":"tag","published_at":"2018-11-26T19:03:44.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.12","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.12/manifests"},{"name":"0.8.11","sha":"b8a31760a9814ee1e2f9714073f07be3ded95857","kind":"tag","published_at":"2018-11-05T19:36:10.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.11","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.11/manifests"},{"name":"0.8.10","sha":"25d8fd72d59d0d0a4d950cb17c83c05b46e77111","kind":"tag","published_at":"2018-11-05T07:57:07.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.10","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.10","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.10","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.10","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.10/manifests"},{"name":"0.8.9","sha":"84e9ebe6f566342afef61afdd2af780a4b3c5bc2","kind":"tag","published_at":"2018-08-22T07:41:25.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.9","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.9/manifests"},{"name":"0.8.8","sha":"26cd309bb4240c40e823351eab6acb1f9175bd63","kind":"tag","published_at":"2018-08-02T08:04:26.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.8","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.8/manifests"},{"name":"0.8.7","sha":"264b0d323ffd66f6349aeef7f0340e46003796f3","kind":"tag","published_at":"2018-07-12T14:01:06.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.7","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.7/manifests"},{"name":"0.8.6","sha":"aa4fff5128a255ed12511b1d92fab69e3e62efd8","kind":"tag","published_at":"2018-06-27T12:34:11.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.6","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.6/manifests"},{"name":"0.8.5","sha":"3c09bbc6edfd1a01a521d2ab048df337572e970f","kind":"tag","published_at":"2018-06-14T08:28:53.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.5","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.5/manifests"},{"name":"0.8.4","sha":"40e35a616c03bf67a0d7035553149526af112543","kind":"tag","published_at":"2018-05-03T17:15:44.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.4","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.4/manifests"},{"name":"0.8.3","sha":"363676135db567b9cd6a727d3a7863c9096d0902","kind":"tag","published_at":"2018-05-02T07:06:27.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.3","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.3/manifests"},{"name":"0.8.2","sha":"0aa72ee4ff7d9b461bf3e113238349a1b24f15d6","kind":"tag","published_at":"2018-05-01T06:11:50.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.2/manifests"},{"name":"0.8.1","sha":"7f1cd400ff1b2e74cb8bd46dc6574c8e10739d60","kind":"tag","published_at":"2018-04-28T18:58:53.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.1/manifests"},{"name":"0.8.0","sha":"575c1369e7bc6b4a7bb5644d90a63b0e104f02d4","kind":"tag","published_at":"2018-04-27T13:21:01.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.8.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.8.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.8.0/manifests"},{"name":"0.7.2","sha":"f6b0f77e521910abf6d93c87faace61746d3d576","kind":"tag","published_at":"2018-04-23T10:25:52.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.7.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.7.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.7.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.7.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.7.2/manifests"},{"name":"0.7.1","sha":"e594dbef9e2dfe09ee466f6bd961bd63cb46b86c","kind":"tag","published_at":"2018-04-18T13:32:22.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.7.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.7.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.7.1/manifests"},{"name":"0.7.0","sha":"6951b6a8f935686c987cdd4c738e60674a58f857","kind":"tag","published_at":"2018-04-17T07:26:28.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.7.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.7.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.7.0/manifests"},{"name":"0.6.14","sha":"c61605ed9318608a2be3454565f7d29bbccf850d","kind":"tag","published_at":"2018-04-05T18:08:05.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.14","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.14","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.14","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.14","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.14/manifests"},{"name":"0.6.12","sha":"66eefdd9af893aa5a4c943f7795e654b88393a35","kind":"tag","published_at":"2018-03-27T07:37:30.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.12","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.12/manifests"},{"name":"0.6.11","sha":"0fca428ea8b6e771b0bacdc9cd22151c8722fd26","kind":"tag","published_at":"2018-03-26T18:27:41.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.11","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.11/manifests"},{"name":"0.6.10","sha":"dfffb4441549209eff3fdd071f4861ed670509cb","kind":"tag","published_at":"2018-03-23T08:38:57.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.10","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.10","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.10","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.10","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.10/manifests"},{"name":"0.6.9","sha":"75264fdbcc4aa45a3ddfed27065371046d9f4483","kind":"tag","published_at":"2018-03-22T14:32:23.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.9","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.9/manifests"},{"name":"0.6.8","sha":"d255ce0cfd89a22bfa612213da0ba5e1a6de0f44","kind":"tag","published_at":"2018-03-22T10:33:37.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.8","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.8/manifests"},{"name":"0.6.7","sha":"99198f2b7f7d1d30956fb987d0dc79cda07ed54e","kind":"tag","published_at":"2018-03-20T16:05:06.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.7","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.7/manifests"},{"name":"0.6.6","sha":"442eb7510623072e3fac7da437671e406c05eca9","kind":"tag","published_at":"2018-03-20T14:47:20.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.6","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.6/manifests"},{"name":"0.6.5","sha":"5732fddfc2ed6e821abb01785e6b5ba1e6e5a44a","kind":"tag","published_at":"2018-03-19T12:43:00.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.5","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.5/manifests"},{"name":"0.6.4","sha":"10af76f7eb8db309866c1918d961533dbb906812","kind":"tag","published_at":"2018-03-17T11:03:57.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.4","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.4/manifests"},{"name":"0.6.3","sha":"6465d89fa6c4fb2db5f8c169b9f89531cfc39418","kind":"tag","published_at":"2018-03-16T20:25:59.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.3","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.3/manifests"},{"name":"0.6.2","sha":"dd54a61386659022137e3f1e57017b7f9510c8b2","kind":"tag","published_at":"2018-03-16T20:09:36.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.2/manifests"},{"name":"0.6.1","sha":"67ca50ce8ca3a0ab1f057f5bd8c8d7bd3173d8d1","kind":"tag","published_at":"2018-03-16T18:36:54.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.1/manifests"},{"name":"0.6.0","sha":"3102c8a4c74ebbfc596adb7508e7b9bbc0da017c","kind":"tag","published_at":"2018-03-16T13:08:08.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.6.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.6.0/manifests"},{"name":"0.5.7","sha":"bb971b8f4712230cc775bbdd52436bccb0a14cf1","kind":"tag","published_at":"2018-03-08T19:59:27.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.7","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.7/manifests"},{"name":"0.5.6","sha":"1c68ea6807baf18ea668668fe6889efbf2dfc9de","kind":"tag","published_at":"2018-03-08T19:27:26.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.6","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.6/manifests"},{"name":"0.5.5","sha":"8f9648d5ecd6110759020248fe1814078933e5a6","kind":"tag","published_at":"2018-03-08T13:05:41.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.5","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.5/manifests"},{"name":"0.5.4","sha":"227bda4f1fe83003953ae15c42fe8326e21ef5cf","kind":"tag","published_at":"2018-03-07T19:14:16.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.4","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.4/manifests"},{"name":"0.5.3","sha":"13ce58f4507481be2d725e9c9cde664f0d3fe141","kind":"tag","published_at":"2018-03-07T12:46:11.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.3","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.3/manifests"},{"name":"0.5.2","sha":"8df36a86f9dd4585061b430dfe6cc7fc2d62c0cb","kind":"tag","published_at":"2018-03-06T11:35:57.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.2/manifests"},{"name":"0.5.1","sha":"b8062b67ae202a729c284eebf45e344dfe202b6a","kind":"tag","published_at":"2018-03-05T17:42:34.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.1/manifests"},{"name":"0.5.0","sha":"8d521f55882f447327c385b81abda9730f2bde19","kind":"tag","published_at":"2018-03-05T17:28:07.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.5.0","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.5.0/manifests"},{"name":"0.4.3","sha":"b99a2c0dae7afaedcb722b212a87e33dda73585d","kind":"tag","published_at":"2018-02-11T18:33:35.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.4.3","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.4.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.4.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4.3/manifests"},{"name":"0.4.2","sha":"f08793123ba25963e1a5d812c3cd59c9aefc110e","kind":"tag","published_at":"2018-02-11T15:56:01.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.4.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.4.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.4.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4.2/manifests"},{"name":"0.4.1","sha":"2e507af31d4222427903ed9264b0164b0fe40393","kind":"tag","published_at":"2018-02-11T15:19:45.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.4.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4.1/manifests"},{"name":"0.4","sha":"9c1e7c60d4846f2b0ccb156884c8f3ebd248f923","kind":"tag","published_at":"2018-02-11T15:07:16.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.4","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.4/manifests"},{"name":"0.3","sha":"f8637f2aa7dfe299c29df08eb81ec86596c23175","kind":"tag","published_at":"2018-02-09T18:34:05.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.3","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.3/manifests"},{"name":"0.2","sha":"54687742d354e7d6d7e83228d493c82951b5130e","kind":"tag","published_at":"2018-01-25T08:46:04.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.2","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.2/manifests"},{"name":"0.1","sha":"3c52e7cc6933b830dd729a867dd0db7abc796122","kind":"tag","published_at":"2018-01-25T08:33:29.000Z","download_url":"https://codeload.github.com/aertslab/pySCENIC/tar.gz/0.1","html_url":"https://github.com/aertslab/pySCENIC/releases/tag/0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aertslab/pySCENIC@0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/tags/0.1/manifests"}]},"repo_metadata_updated_at":"2025-08-27T13:58:16.384Z","dependent_packages_count":6,"downloads":4173,"downloads_period":"last-month","dependent_repos_count":14,"rankings":{"downloads":6.598320427527539,"dependent_repos_count":3.872059026130084,"dependent_packages_count":2.341654710664754,"stargazers_count":3.442141266671258,"forks_count":3.834300373616157,"docker_downloads_count":3.1220281319303727,"average":3.868417322756694},"purl":"pkg:pypi/pyscenic","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/pyscenic","docker_dependents_count":4,"docker_downloads_count":461,"usage_url":"https://repos.ecosyste.ms/usage/pypi/pyscenic","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/pyscenic/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-26T23:27:56.994Z","issues_count":251,"pull_requests_count":14,"avg_time_to_close_issue":3301413.1860465114,"avg_time_to_close_pull_request":9522287.166666666,"issues_closed_count":86,"pull_requests_closed_count":12,"pull_request_authors_count":5,"issue_authors_count":191,"avg_comments_per_issue":2.7051792828685257,"avg_comments_per_pull_request":1.1428571428571428,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":8,"past_year_issues_count":61,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":978501.1111111111,"past_year_avg_time_to_close_pull_request":82.0,"past_year_issues_closed_count":9,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":41,"past_year_avg_comments_per_issue":1.639344262295082,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pyscenic/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pyscenic/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pyscenic/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pyscenic/related_packages","maintainers":[{"uuid":"cflerin","login":"cflerin","name":null,"email":null,"url":null,"packages_count":3,"html_url":"https://pypi.org/user/cflerin/","role":null,"created_at":"2023-01-19T18:47:48.326Z","updated_at":"2023-01-19T18:47:48.326Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/cflerin/packages"},{"uuid":"ghuls","login":"ghuls","name":null,"email":null,"url":null,"packages_count":4,"html_url":"https://pypi.org/user/ghuls/","role":null,"created_at":"2023-01-19T18:47:48.342Z","updated_at":"2023-01-19T18:47:48.342Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/ghuls/packages"},{"uuid":"bram.vandesande","login":"bram.vandesande","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/bram.vandesande/","role":null,"created_at":"2023-01-19T18:47:48.308Z","updated_at":"2023-01-19T18:47:48.308Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/bram.vandesande/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726167,"maintainers_count":308804,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":640778,"full_name":"aertslab/pySCENIC","default_branch":"master","committers":[{"name":"bramvandesande","email":"vandesande.bram@gmail.com","login":null,"count":377},{"name":"Chris Flerin","email":"ccflerin@gmail.com","login":null,"count":119},{"name":"Gert Hulselmans","email":"gert.hulselmans@kuleuven.be","login":null,"count":45},{"name":"Bram Van de Sande","email":"bram.vandesande@ucb.com","login":null,"count":15},{"name":"Gert Hulselmans","email":"gert.hulselmans@kuleuven.vib.be","login":null,"count":14},{"name":"Carmen Bravo","email":"carmen.bravogonzalezblas@kuleuven.be","login":null,"count":11},{"name":"Bram Van de Sande","email":"bramvds","login":"bramvds","count":7},{"name":"Chris Campbell Flerin","email":"CCFlerin@gmail.com","login":null,"count":4},{"name":"dweemx","email":"maxime.dewaegeneer@kuleuven.vib.be","login":null,"count":4},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":4},{"name":"Sara Aibar","email":"20438544+s-aibar","login":"s-aibar","count":3},{"name":"cbravo","email":"carmenbravogb@gmail.com","login":null,"count":2},{"name":"simonvh","email":"simon.vanheeringen@gmail.com","login":null,"count":2},{"name":"PascalP","email":"pascal-git","login":"pascal-git","count":2},{"name":"u0125489","email":"u0125489@gbw-s-seq10.luna.kuleuven.be","login":null,"count":1},{"name":"Lorena Mendez","email":"pjc1108@gmail.com","login":null,"count":1},{"name":"Carlos Enriquez","email":"carlos.enriquez9896@gmail.com","login":null,"count":1},{"name":"dweemx","email":"maxime.dewaegeneer@kuleuven.be","login":null,"count":1}],"total_commits":613,"total_committers":18,"total_bot_commits":4,"total_bot_committers":1,"mean_commits":34.05555555555556,"dds":0.3849918433931484,"past_year_committers":[{"name":"Gert Hulselmans","email":"gert.hulselmans@kuleuven.be","login":null,"count":26},{"name":"Carlos Enriquez","email":"carlos.enriquez9896@gmail.com","login":null,"count":1}],"past_year_total_commits":27,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":13.5,"past_year_dds":0.03703703703703709,"last_synced_at":"2023-10-25T14:41:14.117Z","last_synced_commit":"31d51a1625f12fb3c6e92bc48ecc9d401524c22a","created_at":"2023-03-09T08:52:31.402Z","updated_at":"2023-10-25T14:41:14.118Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-07T00:00:09.744Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"aertslab/pySCENIC","html_url":"https://github.com/aertslab/pySCENIC","last_synced_at":"2025-08-31T09:29:21.333Z","status":null,"issues_count":249,"pull_requests_count":15,"avg_time_to_close_issue":3367588.8095238097,"avg_time_to_close_pull_request":8789806.076923076,"issues_closed_count":84,"pull_requests_closed_count":13,"pull_request_authors_count":5,"issue_authors_count":190,"avg_comments_per_issue":2.674698795180723,"avg_comments_per_pull_request":1.0666666666666667,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":8,"past_year_issues_count":54,"past_year_pull_requests_count":3,"past_year_avg_time_to_close_issue":998114.7142857143,"past_year_avg_time_to_close_pull_request":65.66666666666667,"past_year_issues_closed_count":7,"past_year_pull_requests_closed_count":3,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":36,"past_year_avg_comments_per_issue":0.9629629629629629,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T21:52:36.313Z","updated_at":"2025-09-03T03:55:33.201Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/aertslab%2FpySCENIC/issues","issue_labels_count":{"bug":149,"question":44,"results":12,"python":2,"duplicate":1},"pull_request_labels_count":{"dependencies":8},"issue_author_associations_count":{"NONE":252,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":9,"NONE":6},"issue_authors":{"KOBE24DUNK":7,"wangjiawen2013":7,"Sirin24":5,"Erfan1369":5,"yulchen810":4,"JensFGG":4,"rayajallad":4,"GeneVector5":3,"Flu09":3,"Sayyam-Shah":3,"stefanerb89":2,"ken-chen-18":2,"robertzeibich":2,"baptisteavot-ukdri":2,"apal6":2,"AnjaliS1":2,"juhi-ku":2,"li-xuyang28":2,"CampingOnSeabed":2,"hbandukw":2,"Fugwaaaa":2,"Liripo":2,"qijt123":2,"liliyuan001":2,"hyjforesight":2,"Tripfantasy":2,"Su870":2,"ggruenhagen3":2,"Li-ZhiD":2,"Sophielsn":2,"mcsimenc":2,"CCCKW":2,"Sa753":2,"xyang2uchicago":2,"chenfengQAQ":1,"pcm32":1,"mengfeiwangdmu":1,"jakob-arnold":1,"nasjr08":1,"bitcometz":1,"noranekonobokkusu":1,"zznx":1,"mt98":1,"colin893":1,"bvaldebenitom":1,"jklupup":1,"charlesgwellem":1,"whoisleehom":1,"Always-Stude":1,"maaraujo10":1,"YOUWEIQINGHUAN":1,"fangshansh":1,"Dragonlongzhilin":1,"JewelBanik":1,"frenkiboy":1,"StevenTur":1,"tuqiang2014":1,"oligomyeggo":1,"RunyuXia":1,"Dingpw":1,"jeongdo801":1,"MarcusLCC":1,"yllahmu":1,"amberqiong":1,"smanne07":1,"xgqyoung":1,"FionaMoon":1,"LiorBaryo":1,"malosreet":1,"strawberry789":1,"M-jk22":1,"cchen22":1,"Chun-Hao025":1,"Tianran1":1,"realzehuali":1,"danielgchen":1,"MikeEterman":1,"aterceros":1,"watermelontreesjs":1,"thereallda":1,"qiruicheng":1,"TobiTekath":1,"Prathyusha-konda":1,"Quentin-bioinfo":1,"jiangzh-coder":1,"gaelcge":1,"fouerghi":1,"AAA-3":1,"carlos-a-enriquez":1,"lexuziandyu":1,"wariobrega":1,"zehualilab":1,"Ashone1992":1,"radiasso":1,"biostu24":1,"arunchakra":1,"Mira0507":1,"ishwarvh":1,"ojikj2019":1,"QianLLLL":1,"deevdevil88":1,"holazzh":1,"ChrisSteel-bio":1,"northNomad":1,"execbbbr":1,"PauBadiaM":1,"lucygarner":1,"leeanapeters":1,"seemak21":1,"JRZL123":1,"c5creative":1,"sunnyzwu":1,"LacquerHed":1,"eblchen":1,"BanafshehKhaki":1,"crotoc":1,"jung233":1,"huangtao-china":1,"Shiywa":1,"ASNbioinf":1,"farhad-zare":1,"Beki-seq":1,"hansong798":1,"SYSUMSD":1,"Shin8a":1,"mehrankr":1,"nitinnarwade":1,"Ijoanito":1,"zzzseeu":1,"tilofrei":1,"youwh1996":1,"fizwit":1,"yanwuanxin":1,"husain223":1,"Sophia409":1,"strawberry098":1,"redbybeing":1,"juniajvs":1,"Li-mengjie":1,"dmalzl":1,"JPcerapio":1,"Achiraa":1,"xiaodiYan":1,"anyang-kevin":1,"RolantusdataExp":1,"jesswhitts":1,"fbrundu":1,"bapoorva":1,"zhangdong360":1,"yixxx091":1,"angelica-varesi":1,"chengwenxuan1997":1,"Famingzhao":1,"ruoyeruolan":1,"iammrtza":1,"tuanpham96":1,"mchua4":1,"daweibushen":1,"xujie1020":1,"Jiayi-Zheng":1,"wbrett87":1,"ronyripan":1,"tutu256":1,"saeedfc":1,"npees1":1,"caodudu":1,"LinearParadox":1,"shangguandong1996":1,"amiramarouf":1,"honghh2018":1,"socialtree-yt":1,"HelloWorldLTY":1,"xiangyupan":1,"loelj":1,"stanaka6":1,"zhrmxxs":1,"HaixJiang":1,"Marinnane":1,"lpalvin":1,"YangLi-Bio":1,"VincentGardeux":1,"chrarnold":1,"twoneu":1,"MGMCN":1,"lindaseong":1,"rojinsafavi":1,"alyamahmoud":1,"chentongouc":1,"wuxiangning":1,"SBata":1,"jnmaciuch":1,"Xicici-Yan":1,"zhongguodiyidao":1,"gloriafight":1},"pull_request_authors":{"dependabot[bot]":8,"sabeck123":3,"carlos-a-enriquez":2,"MGMCN":1,"pcm32":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10072086,"issues_count":31257663,"pull_requests_count":95517173,"authors_count":10689807,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":28,"question":10},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":53},"past_year_pull_request_author_associations_count":{"NONE":3},"past_year_issue_authors":{"yulchen810":4,"Sirin24":4,"rayajallad":4,"xyang2uchicago":2,"apal6":2,"baptisteavot-ukdri":2,"CampingOnSeabed":2,"juhi-ku":2,"Sophielsn":2,"Fugwaaaa":2,"robertzeibich":2,"Li-ZhiD":1,"npees1":1,"PauBadiaM":1,"radiasso":1,"redbybeing":1,"RunyuXia":1,"SYSUMSD":1,"tuanpham96":1,"wuxiangning":1,"zznx":1,"li-xuyang28":1,"LiorBaryo":1,"jklupup":1,"jakob-arnold":1,"huangtao-china":1,"holazzh":1,"Flu09":1,"Chun-Hao025":1,"ChrisSteel-bio":1,"chenfengQAQ":1,"aterceros":1,"Ashone1992":1,"anyang-kevin":1,"amiramarouf":1,"Achiraa":1},"past_year_pull_request_authors":{"sabeck123":3},"maintainers":[],"active_maintainers":[]},"events":{"total":{"CommitCommentEvent":1,"IssuesEvent":34,"WatchEvent":89,"IssueCommentEvent":95,"PushEvent":1,"PullRequestEvent":2,"ForkEvent":19},"last_year":{"CommitCommentEvent":1,"IssuesEvent":34,"WatchEvent":89,"IssueCommentEvent":95,"PushEvent":1,"PullRequestEvent":2,"ForkEvent":19}},"keywords":["gene-regulatory-network","single-cell","transcription-factors","transcriptomics"],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.doc.txt","sha":null,"kind":"manifest","created_at":"2022-07-21T21:32:46.240Z","updated_at":"2022-07-21T21:32:46.240Z","repository_link":"https://github.com/aertslab/pySCENIC/blob/master/requirements.doc.txt","dependencies":[{"id":353267733,"package_name":"sphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353267734,"package_name":"sphinx_rtd_theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353267735,"package_name":"restructuredtext_lint","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-07-21T21:32:46.783Z","updated_at":"2022-07-21T21:32:46.783Z","repository_link":"https://github.com/aertslab/pySCENIC/blob/master/requirements.txt","dependencies":[{"id":353273095,"package_name":"ctxcore","ecosystem":"pypi","requirements":"\u003e=0.2.0","direct":true,"kind":"runtime","optional":false},{"id":353273096,"package_name":"cytoolz","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273097,"package_name":"multiprocessing_on_dill","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273098,"package_name":"llvmlite","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273099,"package_name":"numba","ecosystem":"pypi","requirements":"\u003e=0.51.2","direct":true,"kind":"runtime","optional":false},{"id":353273100,"package_name":"attrs","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273101,"package_name":"frozendict","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273102,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273103,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=1.3.5","direct":true,"kind":"runtime","optional":false},{"id":353273104,"package_name":"cloudpickle","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273105,"package_name":"dask","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273106,"package_name":"distributed","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273107,"package_name":"arboreto","ecosystem":"pypi","requirements":"\u003e=0.1.6","direct":true,"kind":"runtime","optional":false},{"id":353273108,"package_name":"boltons","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273109,"package_name":"setuptools","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273110,"package_name":"pyyaml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273111,"package_name":"tqdm","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273112,"package_name":"interlap","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273113,"package_name":"umap-learn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273114,"package_name":"loompy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273115,"package_name":"networkx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273116,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273117,"package_name":"fsspec","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273118,"package_name":"requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273119,"package_name":"aiohttp","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":353273120,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.22.2","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-10-20T16:22:52.288Z","updated_at":"2023-10-20T16:22:52.288Z","repository_link":"https://github.com/aertslab/pySCENIC/blob/master/Dockerfile","dependencies":[{"id":14264729106,"package_name":"python","ecosystem":"docker","requirements":"3.10.6-slim-bullseye","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"requirements_docker_with_scanpy.txt","sha":null,"kind":"manifest","created_at":"2023-10-20T16:22:52.299Z","updated_at":"2023-10-20T16:22:52.299Z","repository_link":"https://github.com/aertslab/pySCENIC/blob/master/requirements_docker_with_scanpy.txt","dependencies":[{"id":14264729107,"package_name":"scanpy","ecosystem":"pypi","requirements":"==1.9.1","direct":true,"kind":"runtime","optional":false},{"id":14264729633,"package_name":"louvain","ecosystem":"pypi","requirements":"==0.7.1","direct":true,"kind":"runtime","optional":false},{"id":14264730176,"package_name":"MulticoreTSNE","ecosystem":"pypi","requirements":"==0.1","direct":true,"kind":"runtime","optional":false},{"id":14264730679,"package_name":"papermill","ecosystem":"pypi","requirements":"==2.3.4","direct":true,"kind":"runtime","optional":false},{"id":14264730680,"package_name":"ipykernel","ecosystem":"pypi","requirements":"==6.15.1","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2023-10-20T16:22:56.556Z","updated_at":"2023-10-20T16:22:56.556Z","repository_link":"https://github.com/aertslab/pySCENIC/blob/master/setup.py","dependencies":[]}],"score":17.974615085553364,"created_at":"2025-09-08T11:19:05.998Z","updated_at":"2025-10-07T08:25:53.333Z","avatar_url":"https://github.com/aertslab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":4173,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1038/nmeth.4463","https://doi.org/10.1371/journal.pone.0012776","https://doi.org/10.1038/s41596-020-0336-2"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["genomics","interactive","serializer","cycles","packaging","network-simulation","shellcodes","hacking","autograding","observability"],"project_url":"https://science.ecosyste.ms/api/v1/projects/70087","html_url":"https://science.ecosyste.ms/projects/70087"}