{"id":70806,"name":"WormTensor","description":"R package for a Clustering Method for Time-Series Whole-Brain Activity Data of C. elegans","url":"https://github.com/rikenbit/wormtensor","last_synced_at":"2025-09-08T15:10:22.084Z","repository":{"id":37368853,"uuid":"491771057","full_name":"rikenbit/WormTensor","owner":"rikenbit","description":"R package for a Clustering Method for Time-Series Whole-Brain Activity Data of C. elegans","archived":false,"fork":false,"pushed_at":"2025-07-21T16:28:51.000Z","size":5337,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-23T19:48:15.781Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rikenbit.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-05-13T05:40:27.000Z","updated_at":"2025-07-21T16:28:56.000Z","dependencies_parsed_at":"2024-07-23T05:26:44.211Z","dependency_job_id":"d314459f-4156-495f-be15-d9950fbe5ff6","html_url":"https://github.com/rikenbit/WormTensor","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/rikenbit/WormTensor","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","download_url":"https://codeload.github.com/rikenbit/WormTensor/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274202777,"owners_count":25240371,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"rikenbit","name":"RIKEN BiT","uuid":"7158513","kind":"organization","description":"Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research","email":null,"website":"https://bit.riken.jp/","location":"Japan","twitter":"dritoshien","company":null,"icon_url":"https://avatars.githubusercontent.com/u/7158513?v=4","repositories_count":80,"last_synced_at":"2023-12-01T06:00:19.976Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rikenbit","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T07:14:01.098Z","updated_at":"2023-12-01T06:00:21.332Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit/repositories"},"packages":[{"id":5223236,"name":"WormTensor","ecosystem":"cran","description":"A Clustering Method for Time-Series Whole-Brain Activity Data of\n'C. elegans'","homepage":"https://github.com/rikenbit/WormTensor","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/rikenbit/WormTensor","keywords_array":[],"namespace":null,"versions_count":3,"first_release_published_at":"2022-09-08T00:00:00.000Z","latest_release_published_at":"2025-07-21T00:00:00.000Z","latest_release_number":"0.1.2","last_synced_at":"2025-08-23T17:34:45.400Z","created_at":"2022-09-08T09:46:48.373Z","updated_at":"2025-08-24T00:20:11.052Z","registry_url":"https://cran.r-project.org/package=WormTensor","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/WormTensor/WormTensor.pdf","metadata":{},"repo_metadata":{"id":37368853,"uuid":"491771057","full_name":"rikenbit/WormTensor","owner":"rikenbit","description":"R package for a Clustering Method for Time-Series Whole-Brain Activity Data of C. elegans","archived":false,"fork":false,"pushed_at":"2025-07-21T16:28:51.000Z","size":5336,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-07-21T16:43:45.750Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rikenbit.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-05-13T05:40:27.000Z","updated_at":"2025-07-21T16:28:56.000Z","dependencies_parsed_at":"2024-07-23T05:26:44.211Z","dependency_job_id":"d314459f-4156-495f-be15-d9950fbe5ff6","html_url":"https://github.com/rikenbit/WormTensor","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/rikenbit/WormTensor","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","download_url":"https://codeload.github.com/rikenbit/WormTensor/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271760455,"owners_count":24816426,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-23T02:00:09.327Z","response_time":69,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"rikenbit","name":"RIKEN BiT","uuid":"7158513","kind":"organization","description":"Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research","email":null,"website":"https://bit.riken.jp/","location":"Japan","twitter":"dritoshien","company":null,"icon_url":"https://avatars.githubusercontent.com/u/7158513?v=4","repositories_count":80,"last_synced_at":"2023-12-01T06:00:19.976Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rikenbit","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T07:14:01.098Z","updated_at":"2023-12-01T06:00:21.332Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit/repositories"},"tags":[{"name":"v0.1.1","sha":"a9b2bd1cc5e256aea7bad956cdd960a8903c5631","kind":"commit","published_at":"2024-07-23T08:50:27.000Z","download_url":"https://codeload.github.com/rikenbit/WormTensor/tar.gz/v0.1.1","html_url":"https://github.com/rikenbit/WormTensor/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rikenbit/WormTensor@v0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/tags/v0.1.1/manifests"},{"name":"v0.1.0","sha":"c2dbb150b4844bc596ccfa5feca9890f2997e2b8","kind":"commit","published_at":"2022-09-08T09:53:47.000Z","download_url":"https://codeload.github.com/rikenbit/WormTensor/tar.gz/v0.1.0","html_url":"https://github.com/rikenbit/WormTensor/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rikenbit/WormTensor@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2025-08-24T00:20:11.052Z","dependent_packages_count":0,"downloads":255,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":89.3237928256646,"dependent_repos_count":35.45467469080226,"dependent_packages_count":29.796711368051938,"stargazers_count":35.15613893759181,"forks_count":28.830024167180024,"average":43.712268397858125},"purl":"pkg:cran/WormTensor","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/WormTensor","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/WormTensor","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/WormTensor/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-23T17:53:10.090Z","issues_count":24,"pull_requests_count":1,"avg_time_to_close_issue":5225929.875,"avg_time_to_close_pull_request":18.0,"issues_closed_count":24,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":3.0833333333333335,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":12516.0,"past_year_avg_time_to_close_pull_request":18.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":8.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/issues","maintainers":[{"login":"yamaken37","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/yamaken37"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/WormTensor/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/WormTensor/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/WormTensor/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/WormTensor/related_packages","maintainers":[{"uuid":"yamaken37.the.answer@gmail.com","login":null,"name":"Kentaro Yamamoto","email":"yamaken37.the.answer@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2022-11-14T17:26:59.002Z","updated_at":"2022-11-14T17:26:59.002Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/yamaken37.the.answer@gmail.com/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"id":726349,"full_name":"rikenbit/WormTensor","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2023-03-09T13:17:04.797Z","updated_at":"2023-03-09T13:17:04.797Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483990,"commits_count":854433418,"contributors_count":31153023,"owners_count":909123,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"rikenbit/WormTensor","html_url":"https://github.com/rikenbit/WormTensor","last_synced_at":"2025-08-23T17:53:10.090Z","status":"error","issues_count":24,"pull_requests_count":1,"avg_time_to_close_issue":5225929.875,"avg_time_to_close_pull_request":18.0,"issues_closed_count":24,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":3.0833333333333335,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":12516.0,"past_year_avg_time_to_close_pull_request":18.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":8.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2023-05-10T23:07:59.692Z","updated_at":"2025-09-01T21:19:02.739Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FWormTensor/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":21,"COLLABORATOR":4},"pull_request_author_associations_count":{"COLLABORATOR":1},"issue_authors":{"kokitsuyuzaki":20,"yamaken37":4,"asardaes":1},"pull_request_authors":{"yamaken37":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10070520,"issues_count":31245065,"pull_requests_count":95403746,"authors_count":10689205,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"yamaken37","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/yamaken37"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"PushEvent":2,"CreateEvent":1},"last_year":{"WatchEvent":1,"PushEvent":2,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-07-12T12:30:43.066Z","updated_at":"2022-07-12T12:30:43.066Z","repository_link":"https://github.com/rikenbit/WormTensor/blob/master/DESCRIPTION","dependencies":[{"id":156323282,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.1.0","direct":true,"kind":"depends","optional":false},{"id":156323283,"package_name":"rTensor","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323284,"package_name":"dtwclust","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323285,"package_name":"clusterSim","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323286,"package_name":"clValid","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323287,"package_name":"aricode","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323288,"package_name":"cluster","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323289,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323290,"package_name":"Rtsne","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323291,"package_name":"uwot","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":156323292,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/build_push_test.yml","sha":null,"kind":"manifest","created_at":"2024-07-23T05:26:43.172Z","updated_at":"2024-07-23T05:26:43.172Z","repository_link":"https://github.com/rikenbit/WormTensor/blob/master/.github/workflows/build_push_test.yml","dependencies":[{"id":19265860268,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19265860269,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19265860270,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2024-07-23T05:26:43.709Z","updated_at":"2024-07-23T05:26:43.709Z","repository_link":"https://github.com/rikenbit/WormTensor/blob/master/Dockerfile","dependencies":[{"id":19265860271,"package_name":"bioconductor/bioconductor_docker","ecosystem":"docker","requirements":"devel","direct":true,"kind":"build","optional":false}]}],"score":null,"created_at":"2025-09-08T11:19:59.891Z","updated_at":"2025-10-07T08:26:00.560Z","avatar_url":"https://github.com/rikenbit.png","language":"R","category":null,"sub_category":null,"monthly_downloads":255,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.7064124"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/70806","html_url":"https://science.ecosyste.ms/projects/70806"}