{"id":712,"name":"Contextualized","description":"Contextualized: Heterogeneous Modeling Toolbox - Published in JOSS (2024)","url":"https://github.com/cnellington/contextualized","last_synced_at":"2025-09-04T16:08:31.852Z","repository":{"id":36993530,"uuid":"392447369","full_name":"cnellington/Contextualized","owner":"cnellington","description":"An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.","archived":false,"fork":false,"pushed_at":"2025-08-06T04:40:49.000Z","size":100988,"stargazers_count":76,"open_issues_count":39,"forks_count":13,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-09-04T05:29:58.927Z","etag":null,"topics":["bioinformatics","machine-learning","medical-informatics","statistics"],"latest_commit_sha":null,"homepage":"http://contextualized.ml/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cnellington.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-08-03T20:29:06.000Z","updated_at":"2025-08-17T07:50:36.000Z","dependencies_parsed_at":"2023-12-27T01:38:25.780Z","dependency_job_id":"337b8344-bc3a-400e-914d-d61a536d8f67","html_url":"https://github.com/cnellington/Contextualized","commit_stats":{"total_commits":295,"total_committers":6,"mean_commits":"49.166666666666664","dds":0.4203389830508475,"last_synced_commit":"a73c6042b358b59561f6732ac0e9d1636fec8cb9"},"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"purl":"pkg:github/cnellington/Contextualized","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cnellington","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273596977,"owners_count":25134259,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cnellington","name":"Caleb Ellington","uuid":"13963825","kind":"user","description":"Computational Biology PhD Student, \r\nCarnegie Mellon University","email":"","website":"https://calebellington.com/","location":"Pittsburgh, PA","twitter":null,"company":"Carnegie Mellon University","icon_url":"https://avatars.githubusercontent.com/u/13963825?u=63fcd9ea601c54909438f116e44b7a937fea00e3\u0026v=4","repositories_count":8,"last_synced_at":"2023-03-03T06:23:33.120Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cnellington","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T18:43:38.697Z","updated_at":"2023-03-03T06:23:33.208Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cnellington","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cnellington/repositories"},"packages":[{"id":5385654,"name":"contextualized-ml","ecosystem":"pypi","description":"A statistical machine learning toolbox for estimating models, distributions, and functions with sample-specific parameters.","homepage":"https://contextualized.ml/","licenses":"GNU General Public License v3 (GPLv3)","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/cnellington/Contextualized","keywords_array":["contextual modeling","graphical models","machine learning","meta-learning","multitask learning"],"namespace":null,"versions_count":11,"first_release_published_at":"2022-11-02T01:54:20.000Z","latest_release_published_at":"2025-02-02T17:02:56.000Z","latest_release_number":"0.2.9","last_synced_at":"2025-09-03T19:42:41.691Z","created_at":"2022-11-02T02:16:58.790Z","updated_at":"2025-09-04T05:20:50.227Z","registry_url":"https://pypi.org/project/contextualized-ml/","install_command":"pip install contextualized-ml --index-url https://pypi.org/simple","documentation_url":"https://contextualized-ml.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["License :: OSI Approved :: GNU General Public License v3 (GPLv3)","Operating System :: OS Independent","Programming Language :: Python :: 3"],"normalized_name":"contextualized-ml","project_status":null},"repo_metadata":{"id":36993530,"uuid":"392447369","full_name":"cnellington/Contextualized","owner":"cnellington","description":"An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.","archived":false,"fork":false,"pushed_at":"2025-08-06T04:40:49.000Z","size":100988,"stargazers_count":76,"open_issues_count":38,"forks_count":13,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-08-27T23:22:22.038Z","etag":null,"topics":["bioinformatics","machine-learning","medical-informatics","statistics"],"latest_commit_sha":null,"homepage":"http://contextualized.ml/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cnellington.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-08-03T20:29:06.000Z","updated_at":"2025-08-17T07:50:36.000Z","dependencies_parsed_at":"2023-12-27T01:38:25.780Z","dependency_job_id":"337b8344-bc3a-400e-914d-d61a536d8f67","html_url":"https://github.com/cnellington/Contextualized","commit_stats":{"total_commits":295,"total_committers":6,"mean_commits":"49.166666666666664","dds":0.4203389830508475,"last_synced_commit":"a73c6042b358b59561f6732ac0e9d1636fec8cb9"},"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"purl":"pkg:github/cnellington/Contextualized","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cnellington","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273499333,"owners_count":25116858,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"cnellington","name":"Caleb Ellington","uuid":"13963825","kind":"user","description":"Computational Biology PhD Student, \r\nCarnegie Mellon University","email":"","website":"https://calebellington.com/","location":"Pittsburgh, PA","twitter":null,"company":"Carnegie Mellon University","icon_url":"https://avatars.githubusercontent.com/u/13963825?u=63fcd9ea601c54909438f116e44b7a937fea00e3\u0026v=4","repositories_count":8,"last_synced_at":"2023-03-03T06:23:33.120Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cnellington","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T18:43:38.697Z","updated_at":"2023-03-03T06:23:33.208Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cnellington","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cnellington/repositories"},"tags":[{"name":"v0.2.9-1","sha":"68f88c198016ab52d5309620a9714b346e0d41b4","kind":"commit","published_at":"2025-02-02T16:59:56.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.9-1","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.9-1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.9-1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.9-1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.9-1/manifests"},{"name":"v0.2.9","sha":"8dace006de5d37c9a707fdca31e783d0f60c39ed","kind":"commit","published_at":"2025-02-02T16:54:55.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.9","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.9/manifests"},{"name":"v0.2.8-zenodo","sha":"9065efebb5cec306290d28412950cefa53631e5d","kind":"commit","published_at":"2024-05-07T14:56:34.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.8-zenodo","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.8-zenodo","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.8-zenodo","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.8-zenodo","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.8-zenodo/manifests"},{"name":"v0.2.8","sha":"b734627abf9ced5f4e31bfa67af7c2d69c6f516e","kind":"commit","published_at":"2024-05-02T19:54:34.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.8","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.8/manifests"},{"name":"v0.2.7","sha":"b6196a9ad31d8ea7708fe579caa6ee12735da740","kind":"commit","published_at":"2023-12-30T00:06:09.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.7","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.7/manifests"},{"name":"v0.2.6","sha":"40fe5017d03c58963ae49ebeb8f3a7f733e891c2","kind":"commit","published_at":"2023-05-13T21:58:35.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.6","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.6/manifests"},{"name":"v0.2.5","sha":"d00cd16aaeaad6d95b2bae1567cb236f3e2001f7","kind":"commit","published_at":"2023-04-24T19:32:21.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.5","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.5/manifests"},{"name":"v0.2.4","sha":"30cb09c0261899584c61eb93997f1ca8a624ca3e","kind":"commit","published_at":"2022-11-28T21:00:43.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.4","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.4/manifests"},{"name":"v0.2.3","sha":"00dc1293a05ef34374f8157db9fa51a366fa9106","kind":"commit","published_at":"2022-11-20T19:40:12.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.3","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.3/manifests"},{"name":"v0.2.2","sha":"d821522b9a98d6d0e05f3f78932bdfc17700f684","kind":"commit","published_at":"2022-11-07T18:56:11.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.2","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.2/manifests"},{"name":"v0.2.0","sha":"da56222f2f4d537ffee1550e6fcc00aec6ba8d98","kind":"commit","published_at":"2022-10-07T23:34:59.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.2.0","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.2.0/manifests"},{"name":"v0.1.2","sha":"e1b1a06368e025ac7f78f5894e930b9ee7cfd167","kind":"commit","published_at":"2022-06-20T15:05:05.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.1.2","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.1.2/manifests"},{"name":"v0.1.1","sha":"5ba0239983d5ee40c29734bf1124e0b3939be964","kind":"commit","published_at":"2022-05-09T21:15:35.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.1.1","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.1.1/manifests"},{"name":"v0.1.0","sha":"64c2e24148733d1260f21630b9a54f9790cd3a19","kind":"commit","published_at":"2022-04-22T21:26:37.000Z","download_url":"https://codeload.github.com/cnellington/Contextualized/tar.gz/v0.1.0","html_url":"https://github.com/cnellington/Contextualized/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cnellington/Contextualized@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2025-09-04T05:20:50.226Z","dependent_packages_count":0,"downloads":53,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":19.73101393251188,"dependent_repos_count":30.61104109666564,"dependent_packages_count":6.633233862033089,"stargazers_count":10.098404758950783,"forks_count":19.552966834918998,"average":17.32533209701608},"purl":"pkg:pypi/contextualized-ml","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/contextualized-ml","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/contextualized-ml","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/contextualized-ml/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-09-03T22:46:15.677Z","issues_count":61,"pull_requests_count":131,"avg_time_to_close_issue":13047156.896551725,"avg_time_to_close_pull_request":913327.5772357724,"issues_closed_count":29,"pull_requests_closed_count":123,"pull_request_authors_count":11,"issue_authors_count":7,"avg_comments_per_issue":1.1967213114754098,"avg_comments_per_pull_request":0.8702290076335878,"merged_pull_requests_count":111,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":6,"past_year_pull_requests_count":22,"past_year_avg_time_to_close_issue":1902332.0,"past_year_avg_time_to_close_pull_request":1060524.9411764706,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":17,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":1.6666666666666667,"past_year_avg_comments_per_pull_request":1.5,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":12,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/issues","maintainers":[{"login":"cnellington","count":90,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cnellington"},{"login":"blengerich","count":56,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/blengerich"}],"active_maintainers":[{"login":"cnellington","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cnellington"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/contextualized-ml/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/contextualized-ml/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/contextualized-ml/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/contextualized-ml/related_packages","maintainers":[{"uuid":"calebellington","login":"calebellington","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/calebellington/","role":null,"created_at":"2023-01-09T07:52:24.676Z","updated_at":"2023-01-09T07:52:24.676Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/calebellington/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":724704,"maintainers_count":308189,"namespaces_count":0,"keywords_count":237984,"github":"pypi","metadata":{"funded_packages_count":50481},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-04T05:23:51.177Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":693030,"full_name":"cnellington/Contextualized","default_branch":"main","committers":[{"name":"Caleb Ellington","email":"caleb.n.ellington@gmail.com","login":"cnellington","count":281},{"name":"Ben Lengerich","email":"blengerich@gmail.com","login":"blengerich","count":142},{"name":"Peter Li","email":"peterli@Peters-MacBook-Pro-2.local","login":null,"count":17},{"name":"wtt102","email":"wtt3182@gmail.com","login":"wtt102","count":16},{"name":"aaron10l","email":"aaronalvarez7394@gmail.com","login":"aaron10l","count":15},{"name":"Peter Li","email":"peterli@Mac.lan","login":null,"count":10},{"name":"Andrea Rubbi","email":"AndreaRubbi","login":"AndreaRubbi","count":9},{"name":"juwayni lucman","email":"ljuwayni@gmail.com","login":"juwaynilucman","count":5},{"name":"Peter Li","email":"peterli@wirelessprvnat-172-16-223-43.near.illinois.edu","login":null,"count":5},{"name":"Jason Paul Miller","email":"jasonversamiller@gmail.com","login":"jxmils","count":3},{"name":"Peter Li","email":"peterli@wirelessprvnat-172-16-183-32.near.illinois.edu","login":null,"count":3},{"name":"PaulCCCCCCH","email":"paulcccccch@gmail.com","login":"PaulCCCCCCH","count":2},{"name":"Jannik Deuschel","email":"62434864+JADEUSC","login":"JADEUSC","count":1},{"name":"Baiheng Chen","email":"115507736+BaihengChen","login":"BaihengChen","count":1}],"total_commits":510,"total_committers":14,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":36.42857142857143,"dds":0.4490196078431372,"past_year_committers":[{"name":"Peter Li","email":"peterli@Peters-MacBook-Pro-2.local","login":null,"count":17},{"name":"Caleb Ellington","email":"cellingt@cs.cmu.edu","login":"cnellington","count":14},{"name":"Peter Li","email":"peterli@Mac.lan","login":null,"count":10},{"name":"Peter Li","email":"peterli@wirelessprvnat-172-16-223-43.near.illinois.edu","login":null,"count":5},{"name":"Jason Paul Miller","email":"jasonversamiller@gmail.com","login":"jxmils","count":3},{"name":"Peter Li","email":"peterli@wirelessprvnat-172-16-183-32.near.illinois.edu","login":null,"count":3},{"name":"Baiheng Chen","email":"115507736+BaihengChen","login":"BaihengChen","count":1}],"past_year_total_commits":53,"past_year_total_committers":7,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":7.571428571428571,"past_year_dds":0.679245283018868,"last_synced_at":"2025-08-07T06:02:37.709Z","last_synced_commit":"8102f64773d8f0ffa09f0812b8c640c41b6e0b30","created_at":"2023-03-09T11:30:58.177Z","updated_at":"2025-08-07T06:02:41.090Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.254Z","repositories_count":5479765,"commits_count":853310153,"contributors_count":31095234,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"cnellington/Contextualized","html_url":"https://github.com/cnellington/Contextualized","last_synced_at":"2025-09-03T22:46:15.677Z","status":"active","issues_count":61,"pull_requests_count":131,"avg_time_to_close_issue":13047156.896551725,"avg_time_to_close_pull_request":913327.5772357724,"issues_closed_count":29,"pull_requests_closed_count":123,"pull_request_authors_count":11,"issue_authors_count":7,"avg_comments_per_issue":1.1967213114754098,"avg_comments_per_pull_request":0.8702290076335878,"merged_pull_requests_count":111,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":6,"past_year_pull_requests_count":22,"past_year_avg_time_to_close_issue":1902332.0,"past_year_avg_time_to_close_pull_request":1060524.9411764706,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":17,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":1.6666666666666667,"past_year_avg_comments_per_pull_request":1.5,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":12,"created_at":"2023-05-15T05:20:22.591Z","updated_at":"2025-09-03T22:46:15.677Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cnellington%2FContextualized/issues","issue_labels_count":{"enhancement":21,"bug":6,"good first issue":5,"documentation":4},"pull_request_labels_count":{"codex":2,"enhancement":1},"issue_author_associations_count":{"OWNER":33,"COLLABORATOR":22,"NONE":6},"pull_request_author_associations_count":{"OWNER":57,"COLLABORATOR":34,"CONTRIBUTOR":21,"NONE":19},"issue_authors":{"cnellington":33,"blengerich":22,"alexanderchang1":2,"vexvexctor":1,"abhinadduri":1,"BaihengChen":1,"holl-":1},"pull_request_authors":{"cnellington":57,"blengerich":34,"CheeseLee888":12,"aaron10l":10,"wtt102":6,"juwaynilucman":4,"jxmils":2,"BaihengChen":2,"fabian-s":2,"AndreaRubbi":1,"Samuel-WM":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10077562,"issues_count":31305350,"pull_requests_count":95961714,"authors_count":10691973,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"codex":2},"past_year_issue_author_associations_count":{"NONE":3,"OWNER":3},"past_year_pull_request_author_associations_count":{"NONE":15,"OWNER":5,"CONTRIBUTOR":2},"past_year_issue_authors":{"cnellington":3,"alexanderchang1":2,"BaihengChen":1},"past_year_pull_request_authors":{"CheeseLee888":12,"cnellington":5,"jxmils":2,"BaihengChen":2,"Samuel-WM":1},"maintainers":[{"login":"cnellington","count":90,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cnellington"},{"login":"blengerich","count":56,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/blengerich"}],"active_maintainers":[{"login":"cnellington","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cnellington"}]},"events":{"total":{"CreateEvent":5,"ReleaseEvent":1,"IssuesEvent":2,"WatchEvent":8,"DeleteEvent":2,"IssueCommentEvent":27,"PushEvent":23,"PullRequestReviewCommentEvent":31,"PullRequestReviewEvent":28,"PullRequestEvent":18,"ForkEvent":6},"last_year":{"CreateEvent":5,"ReleaseEvent":1,"IssuesEvent":2,"WatchEvent":8,"DeleteEvent":2,"IssueCommentEvent":27,"PushEvent":23,"PullRequestReviewCommentEvent":31,"PullRequestReviewEvent":28,"PullRequestEvent":18,"ForkEvent":6}},"keywords":["bioinformatics","machine-learning","medical-informatics","statistics"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/pylint.yml","sha":null,"kind":"manifest","created_at":"2023-01-17T12:00:57.788Z","updated_at":"2023-01-17T12:00:57.788Z","repository_link":"https://github.com/cnellington/Contextualized/blob/main/.github/workflows/pylint.yml","dependencies":[{"id":6988070506,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":6988070509,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/unit-test.yml","sha":null,"kind":"manifest","created_at":"2023-01-17T12:00:58.489Z","updated_at":"2023-01-17T12:00:58.489Z","repository_link":"https://github.com/cnellington/Contextualized/blob/main/.github/workflows/unit-test.yml","dependencies":[{"id":6988073890,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":6988073896,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2023-01-17T12:00:58.670Z","updated_at":"2023-01-17T12:00:58.670Z","repository_link":"https://github.com/cnellington/Contextualized/blob/main/docs/requirements.txt","dependencies":[{"id":6988075045,"package_name":"jupyter-book","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6988075046,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":6988075047,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-12-27T01:38:23.419Z","updated_at":"2023-12-27T01:38:23.419Z","repository_link":"https://github.com/cnellington/Contextualized/blob/main/pyproject.toml","dependencies":[{"id":15293565108,"package_name":"pytorch-lightning","ecosystem":"pypi","requirements":"\u003c=1.9.4","direct":true,"kind":"runtime","optional":false},{"id":15293565109,"package_name":"torch","ecosystem":"pypi","requirements":"\u003c=1.13.1","direct":true,"kind":"runtime","optional":false},{"id":15293565110,"package_name":"torchvision","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":15293565111,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":15293565112,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":15293565113,"package_name":"igraph","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":15293565114,"package_name":"dill","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":15293565115,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":11.372973504542783,"created_at":"2025-09-04T09:17:38.373Z","updated_at":"2025-10-07T08:04:26.933Z","avatar_url":"https://github.com/cnellington.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":53,"funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.06469"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/712","html_url":"https://science.ecosyste.ms/projects/712"}