{"id":71303,"name":"clockSim","description":"R package for circadian clock gene network simulation","url":"https://github.com/yeyuan98/clocksim","last_synced_at":"2025-09-08T15:17:55.739Z","repository":{"id":278506206,"uuid":"932979628","full_name":"yeyuan98/clockSim","owner":"yeyuan98","description":"R package for circadian clock gene network simulation","archived":false,"fork":false,"pushed_at":"2025-04-22T19:41:59.000Z","size":261,"stargazers_count":1,"open_issues_count":1,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-08-30T01:45:21.118Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/yeyuan98.png","metadata":{"files":{"readme":null,"changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-02-14T22:03:20.000Z","updated_at":"2025-07-15T21:01:56.000Z","dependencies_parsed_at":"2025-03-23T16:21:24.144Z","dependency_job_id":"ab4a34da-dca5-498a-b123-0da5d76f5212","html_url":"https://github.com/yeyuan98/clockSim","commit_stats":null,"previous_names":["yeyuan98/clocksim"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/yeyuan98/clockSim","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/yeyuan98","download_url":"https://codeload.github.com/yeyuan98/clockSim/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274203375,"owners_count":25240507,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"yeyuan98","name":"Ye Yuan","uuid":"62569917","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":"University of Michigan, Ann Arbor","icon_url":"https://avatars.githubusercontent.com/u/62569917?v=4","repositories_count":1,"last_synced_at":"2023-07-06T21:27:59.489Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/yeyuan98","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-06T21:27:59.501Z","updated_at":"2023-07-06T21:27:59.501Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/yeyuan98","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/yeyuan98/repositories"},"packages":[{"id":11527153,"name":"clockSim","ecosystem":"cran","description":"Streamlined Simulation of Circadian Gene Networks","homepage":"https://github.com/yeyuan98/clockSim","licenses":"GPL (≥ 3)","normalized_licenses":["CNRI-Python-GPL-Compatible"],"repository_url":"https://github.com/yeyuan98/clockSim","keywords_array":[],"namespace":null,"versions_count":2,"first_release_published_at":"2025-04-07T00:00:00.000Z","latest_release_published_at":"2025-04-22T00:00:00.000Z","latest_release_number":"0.1.2","last_synced_at":"2025-08-30T01:34:44.843Z","created_at":"2025-04-07T16:33:05.930Z","updated_at":"2025-08-30T01:38:53.735Z","registry_url":"https://cran.r-project.org/package=clockSim","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/clockSim/clockSim.pdf","metadata":{},"repo_metadata":{"id":278506206,"uuid":"932979628","full_name":"yeyuan98/clockSim","owner":"yeyuan98","description":"R package for circadian clock gene network simulation","archived":false,"fork":false,"pushed_at":"2025-04-22T19:41:59.000Z","size":261,"stargazers_count":1,"open_issues_count":1,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-07-29T01:42:08.027Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/yeyuan98.png","metadata":{"files":{"readme":null,"changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-02-14T22:03:20.000Z","updated_at":"2025-07-15T21:01:56.000Z","dependencies_parsed_at":"2025-03-23T16:21:24.144Z","dependency_job_id":"ab4a34da-dca5-498a-b123-0da5d76f5212","html_url":"https://github.com/yeyuan98/clockSim","commit_stats":null,"previous_names":["yeyuan98/clocksim"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/yeyuan98/clockSim","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/yeyuan98","download_url":"https://codeload.github.com/yeyuan98/clockSim/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272792785,"owners_count":24993827,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-29T02:00:10.610Z","response_time":87,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"yeyuan98","name":"Ye Yuan","uuid":"62569917","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":"University of Michigan, Ann Arbor","icon_url":"https://avatars.githubusercontent.com/u/62569917?v=4","repositories_count":1,"last_synced_at":"2023-07-06T21:27:59.489Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/yeyuan98","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-06T21:27:59.501Z","updated_at":"2023-07-06T21:27:59.501Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/yeyuan98","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/yeyuan98/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-30T01:38:53.735Z","dependent_packages_count":0,"downloads":548,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":86.7726751315217,"dependent_repos_count":33.03271231359519,"dependent_packages_count":26.8146038526957,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":48.8733304326042},"purl":"pkg:cran/clockSim","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/clockSim","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/clockSim","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/clockSim/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/clockSim/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/clockSim/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/clockSim/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/clockSim/related_packages","maintainers":[{"uuid":"yeyu@umich.edu","login":null,"name":"Ye Yuan","email":"yeyu@umich.edu","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2025-04-07T16:35:09.483Z","updated_at":"2025-04-07T16:35:09.483Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/yeyu@umich.edu/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"yeyuan98/clockSim","html_url":"https://github.com/yeyuan98/clockSim","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T00:42:54.695Z","updated_at":"2025-08-31T03:36:43.458Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/yeyuan98%2FclockSim/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":2},"pull_request_author_associations_count":{},"issue_authors":{"yeyuan98":2},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10167544,"issues_count":32012554,"pull_requests_count":100260947,"authors_count":10729845,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"OWNER":2},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"yeyuan98":2},"past_year_pull_request_authors":{},"maintainers":[{"login":"yeyuan98","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/yeyuan98"}],"active_maintainers":[{"login":"yeyuan98","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/yeyuan98"}]},"events":{"total":{"IssuesEvent":3,"IssueCommentEvent":1,"PushEvent":10,"PullRequestEvent":1,"ForkEvent":1,"CreateEvent":2},"last_year":{"IssuesEvent":3,"IssueCommentEvent":1,"PushEvent":10,"PullRequestEvent":1,"ForkEvent":1,"CreateEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2025-02-20T06:38:57.668Z","updated_at":"2025-02-20T06:38:57.668Z","repository_link":"https://github.com/yeyuan98/clockSim/blob/main/DESCRIPTION","dependencies":[{"id":21953617260,"package_name":"bench","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618233,"package_name":"dde","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618249,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618289,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618291,"package_name":"lomb","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618292,"package_name":"odin","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618322,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618324,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":21953618435,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":21953618436,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-08T11:21:10.151Z","updated_at":"2025-10-07T08:26:08.608Z","avatar_url":"https://github.com/yeyuan98.png","language":"C","category":null,"sub_category":null,"monthly_downloads":548,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/71303","html_url":"https://science.ecosyste.ms/projects/71303"}