{"id":71966,"name":"Vicus","description":"Vicus: Exploiting local structures to improve network-based analysis of biological data","url":"https://github.com/rikenbit/vicus","last_synced_at":"2025-09-08T15:27:48.295Z","repository":{"id":148309484,"uuid":"617712827","full_name":"rikenbit/Vicus","owner":"rikenbit","description":"Vicus: Exploiting local structures to improve network-based analysis of biological data","archived":false,"fork":false,"pushed_at":"2023-03-24T09:57:23.000Z","size":241,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-08-11T03:21:23.746Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rikenbit.png","metadata":{},"created_at":"2023-03-23T00:27:33.000Z","updated_at":"2023-07-25T00:34:10.000Z","dependencies_parsed_at":"2023-05-19T17:45:21.638Z","dependency_job_id":null,"html_url":"https://github.com/rikenbit/Vicus","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/rikenbit/Vicus","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","download_url":"https://codeload.github.com/rikenbit/Vicus/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274205234,"owners_count":25240941,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"rikenbit","name":"RIKEN BiT","uuid":"7158513","kind":"organization","description":"Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research","email":null,"website":"https://bit.riken.jp/","location":"Japan","twitter":"dritoshien","company":null,"icon_url":"https://avatars.githubusercontent.com/u/7158513?v=4","repositories_count":80,"last_synced_at":"2023-12-01T06:00:19.976Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rikenbit","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T07:14:01.098Z","updated_at":"2023-12-01T06:00:21.332Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit/repositories"},"packages":[{"id":6689752,"name":"Vicus","ecosystem":"cran","description":"Exploiting Local Structures to Improve Network-Based Analysis of\nBiological Data","homepage":"https://github.com/rikenbit/Vicus","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/rikenbit/Vicus","keywords_array":[],"namespace":null,"versions_count":1,"first_release_published_at":"2023-03-23T00:00:00.000Z","latest_release_published_at":"2023-03-23T00:00:00.000Z","latest_release_number":"0.99.0","last_synced_at":"2025-08-11T01:50:11.951Z","created_at":"2023-03-23T20:03:13.167Z","updated_at":"2025-08-11T03:11:53.357Z","registry_url":"https://cran.r-project.org/package=Vicus","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/Vicus/Vicus.pdf","metadata":{},"repo_metadata":{"id":148309484,"uuid":"617712827","full_name":"rikenbit/Vicus","owner":"rikenbit","description":"Vicus: Exploiting local structures to improve network-based analysis of biological data","archived":false,"fork":false,"pushed_at":"2023-03-24T09:57:23.000Z","size":241,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-07-09T19:55:39.478Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rikenbit.png","metadata":{},"created_at":"2023-03-23T00:27:33.000Z","updated_at":"2023-07-25T00:34:10.000Z","dependencies_parsed_at":"2023-05-19T17:45:21.638Z","dependency_job_id":null,"html_url":"https://github.com/rikenbit/Vicus","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/rikenbit/Vicus","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","download_url":"https://codeload.github.com/rikenbit/Vicus/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2FVicus/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":269824229,"owners_count":24480958,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-11T02:00:10.019Z","response_time":75,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"rikenbit","name":"RIKEN BiT","uuid":"7158513","kind":"organization","description":"Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research","email":null,"website":"https://bit.riken.jp/","location":"Japan","twitter":"dritoshien","company":null,"icon_url":"https://avatars.githubusercontent.com/u/7158513?v=4","repositories_count":80,"last_synced_at":"2023-12-01T06:00:19.976Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rikenbit","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T07:14:01.098Z","updated_at":"2023-12-01T06:00:21.332Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rikenbit/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-11T03:11:53.356Z","dependent_packages_count":0,"downloads":193,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":89.63654456712315,"dependent_repos_count":35.45467469080226,"dependent_packages_count":29.796711368051938,"stargazers_count":null,"forks_count":null,"average":51.62931020865911},"purl":"pkg:cran/Vicus","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/Vicus","docker_dependents_count":1,"docker_downloads_count":37,"usage_url":"https://repos.ecosyste.ms/usage/cran/Vicus","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/Vicus/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/Vicus/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/Vicus/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/Vicus/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/Vicus/related_packages","maintainers":[{"uuid":"k.t.the-answer@hotmail.co.jp","login":null,"name":"Koki Tsuyuzaki","email":"k.t.the-answer@hotmail.co.jp","url":null,"packages_count":11,"html_url":null,"role":null,"created_at":"2023-03-24T16:17:35.546Z","updated_at":"2023-03-24T16:17:35.546Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/k.t.the-answer@hotmail.co.jp/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"rikenbit/vicus","html_url":"https://github.com/rikenbit/vicus","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-08T15:27:23.516Z","updated_at":"2025-09-08T15:27:23.516Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2Fvicus","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rikenbit%2Fvicus/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10167544,"issues_count":32012554,"pull_requests_count":100260947,"authors_count":10729845,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/build_test_push.yml","sha":null,"kind":"manifest","created_at":"2023-05-19T17:45:21.185Z","updated_at":"2023-05-19T17:45:21.185Z","repository_link":"https://github.com/rikenbit/Vicus/blob/main/.github/workflows/build_test_push.yml","dependencies":[{"id":9802911317,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":9802911321,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":9802911324,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-05-19T17:45:21.284Z","updated_at":"2023-05-19T17:45:21.284Z","repository_link":"https://github.com/rikenbit/Vicus/blob/main/DESCRIPTION","dependencies":[{"id":9802912052,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.4.0","direct":true,"kind":"depends","optional":false},{"id":9802912053,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":9802912054,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":9802912055,"package_name":"RANN","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":9802912056,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":9802912057,"package_name":"RSpectra","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":9802912060,"package_name":"scatterplot3d","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":9802912063,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":9802912065,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":9802912066,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-05-19T17:45:21.525Z","updated_at":"2023-05-19T17:45:21.525Z","repository_link":"https://github.com/rikenbit/Vicus/blob/main/Dockerfile","dependencies":[{"id":9802914318,"package_name":"bioconductor/bioconductor_docker","ecosystem":"docker","requirements":"devel","direct":true,"kind":"build","optional":false}]}],"score":null,"created_at":"2025-09-08T11:22:34.258Z","updated_at":"2025-10-07T08:26:18.205Z","avatar_url":"https://github.com/rikenbit.png","language":"HTML","category":null,"sub_category":null,"monthly_downloads":193,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/71966","html_url":"https://science.ecosyste.ms/projects/71966"}