{"id":72403,"name":"spots","description":"Statistical analysis for spatial omics data","url":"https://github.com/stevexniu/spots","last_synced_at":"2025-09-08T15:35:41.682Z","repository":{"id":62459185,"uuid":"486172858","full_name":"stevexniu/spots","owner":"stevexniu","description":"Statistical analysis for spatial omics data","archived":false,"fork":false,"pushed_at":"2022-07-30T03:16:21.000Z","size":40085,"stargazers_count":10,"open_issues_count":0,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2023-10-20T07:11:54.794Z","etag":null,"topics":["rstats","single-cell","spatial-data-analysis","spatial-statistics","spatial-transcriptomics"],"latest_commit_sha":null,"homepage":"https://stevexniu.github.io/spots/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/stevexniu.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2022-04-27T11:57:03.000Z","updated_at":"2023-06-22T20:19:15.000Z","dependencies_parsed_at":"2022-11-02T00:45:28.911Z","dependency_job_id":null,"html_url":"https://github.com/stevexniu/spots","commit_stats":null,"previous_names":[],"tags_count":1,"template":null,"template_full_name":null,"purl":"pkg:github/stevexniu/spots","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stevexniu%2Fspots","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stevexniu%2Fspots/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stevexniu%2Fspots/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stevexniu%2Fspots/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stevexniu","download_url":"https://codeload.github.com/stevexniu/spots/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stevexniu%2Fspots/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274207175,"owners_count":25241370,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"stevexniu","name":"Steve Niu","uuid":"26992078","kind":"user","description":"PhD student at Weill Cornell Medicine","email":"","website":null,"location":"NYC","twitter":"stevexniu","company":"Tri-Institutional PhD Program in Computational Biology \u0026 Medicine","icon_url":"https://avatars.githubusercontent.com/u/26992078?u=9f30d2b6f270c03a19f49bbd83d13800704e9cd2\u0026v=4","repositories_count":2,"last_synced_at":"2023-10-19T23:34:21.880Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/stevexniu","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-10-19T23:34:22.018Z","updated_at":"2023-10-19T23:34:22.018Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stevexniu","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stevexniu/repositories"},"packages":[{"id":4346383,"name":"spots","ecosystem":"cran","description":"Spatial Component Analysis","homepage":null,"licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/stevexniu/spots","keywords_array":[],"namespace":null,"versions_count":1,"first_release_published_at":"2022-05-03T00:00:00.000Z","latest_release_published_at":"2022-05-03T00:00:00.000Z","latest_release_number":"0.1.0","last_synced_at":"2023-10-20T14:32:57.588Z","created_at":"2022-05-03T10:30:23.794Z","updated_at":"2024-11-23T20:35:10.142Z","registry_url":"https://cran.r-project.org/package=spots","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/spots/spots.pdf","metadata":{},"repo_metadata":{},"repo_metadata_updated_at":"2022-11-01T22:50:03.499Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":35.45467469080226,"dependent_packages_count":29.796711368051938,"stargazers_count":null,"forks_count":null,"average":32.6256930294271},"purl":"pkg:cran/spots","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/spots","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/spots","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/spots/dependencies","status":"removed","funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/spots/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/spots/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/spots/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/spots/related_packages","maintainers":[],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"stevexniu/spots","html_url":"https://github.com/stevexniu/spots","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-02T09:20:18.375Z","updated_at":"2025-09-02T09:20:18.375Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/stevexniu%2Fspots","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/stevexniu%2Fspots/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"nkuweili":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10167544,"issues_count":32012554,"pull_requests_count":100260947,"authors_count":10729845,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"nkuweili":1},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["rstats","single-cell","spatial-data-analysis","spatial-statistics","spatial-transcriptomics"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-11-02T00:45:28.573Z","updated_at":"2022-11-02T00:45:28.573Z","repository_link":"https://github.com/stevexniu/spots/blob/main/DESCRIPTION","dependencies":[{"id":6576941749,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0.0","direct":true,"kind":"depends","optional":false},{"id":6576941750,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6576941751,"package_name":"RSpectra","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6576941752,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6576941753,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6576941754,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6576941755,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6576941756,"package_name":"ape","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6576941757,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6576941758,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6576941759,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false},{"id":6576941760,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-08T11:23:11.132Z","updated_at":"2025-10-07T08:26:24.580Z","avatar_url":"https://github.com/stevexniu.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.6918175","https://doi.org/10.1101/2022.03.15.484516"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/72403","html_url":"https://science.ecosyste.ms/projects/72403"}