{"id":74956,"name":"alignfigr","description":"Create sequence alignment figures in R","url":"https://github.com/sjspielman/alignfigr","last_synced_at":"2025-09-08T16:26:08.498Z","repository":{"id":25633518,"uuid":"29068837","full_name":"sjspielman/alignfigR","owner":"sjspielman","description":"Create sequence alignment figures in R","archived":false,"fork":false,"pushed_at":"2021-10-18T12:22:13.000Z","size":1383,"stargazers_count":6,"open_issues_count":2,"forks_count":2,"subscribers_count":1,"default_branch":"master","last_synced_at":"2023-08-18T04:10:33.455Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sjspielman.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-10T19:47:27.000Z","updated_at":"2023-08-18T04:10:33.456Z","dependencies_parsed_at":"2022-07-12T09:22:42.728Z","dependency_job_id":null,"html_url":"https://github.com/sjspielman/alignfigR","commit_stats":null,"previous_names":[],"tags_count":0,"template":null,"template_full_name":null,"purl":"pkg:github/sjspielman/alignfigR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sjspielman","download_url":"https://codeload.github.com/sjspielman/alignfigR/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274211602,"owners_count":25242053,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"sjspielman","name":"Stephanie","uuid":"4701111","kind":"user","description":"Computational biologist and data scientist","email":"","website":"https://sjspielman.github.io","location":"Philadelphia, PA","twitter":"stephspiel","company":"@AlexsLemonade ","icon_url":"https://avatars.githubusercontent.com/u/4701111?u=ae2c911f5cc1641872f7d19c3497cab0b0abfb2a\u0026v=4","repositories_count":74,"last_synced_at":"2023-08-18T03:57:40.243Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sjspielman","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T14:11:53.442Z","updated_at":"2023-08-18T03:57:43.862Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sjspielman","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sjspielman/repositories"},"packages":[{"id":439136,"name":"alignfigR","ecosystem":"cran","description":"Visualizing Multiple Sequence Alignments with 'ggplot2'","homepage":"https://github.com/sjspielman/alignfigR","licenses":"GPL-2","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/sjspielman/alignfigR","keywords_array":[],"namespace":null,"versions_count":1,"first_release_published_at":"2018-07-05T00:00:00.000Z","latest_release_published_at":"2018-07-05T00:00:00.000Z","latest_release_number":"0.1.1","last_synced_at":"2023-08-18T04:19:15.312Z","created_at":"2022-04-07T00:10:49.165Z","updated_at":"2024-11-23T20:34:43.304Z","registry_url":"https://cran.r-project.org/package=alignfigR","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/alignfigR/alignfigR.pdf","metadata":{},"repo_metadata":{"uuid":"29068837","full_name":"sjspielman/alignfigR","owner":"sjspielman","description":"Create sequence alignment figures in R","archived":false,"fork":false,"pushed_at":"2021-10-18T12:22:13.000Z","size":1383,"stargazers_count":6,"open_issues_count":2,"forks_count":2,"subscribers_count":0,"default_branch":"master","last_synced_at":"2022-10-14T05:02:39.220Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"logo_url":null,"metadata":{},"created_at":"2015-01-10T19:47:27.000Z","updated_at":"2021-10-18T12:22:16.000Z","dependencies_parsed_at":"2022-07-12T09:22:42.728Z","dependency_job_id":null,"repository_url":"http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR","tags_url":"http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR/tags","manifests_url":"http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR/manifests","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":31362488,"host_url":"http://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"http://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names"},"tags":[]},"repo_metadata_updated_at":"2022-11-01T22:49:17.358Z","dependent_packages_count":0,"downloads":0,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":89.70762450836374,"dependent_repos_count":35.45467469080226,"dependent_packages_count":29.796711368051938,"stargazers_count":21.05387859546036,"forks_count":17.76998531014548,"average":38.75657489456476},"purl":"pkg:cran/alignfigR","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/alignfigR","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/alignfigR","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/alignfigR/dependencies","status":"removed","funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/alignfigR/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/alignfigR/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/alignfigR/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/alignfigR/related_packages","maintainers":[],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"id":725222,"full_name":"sjspielman/alignfigR","default_branch":"master","committers":[{"name":"Stephanie J. Spielman","email":"stephanie.spielman@gmail.com","count":41},{"name":"sjspielman","email":"stephanie.spielman@utexas.edu","count":7},{"name":"Stephanie","email":"spielman@rowan.edu","count":2},{"name":"April Wright","email":"wright.aprilm@gmail.com","count":2},{"name":"Stephanie","email":"stephanie.spielman@temple.edu","count":1}],"total_commits":53,"total_committers":5,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":10.6,"dds":0.2264150943396226,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":"2023-03-20T22:13:21.553Z","last_synced_commit":"287d0d90f24c4d62422dab7a5c95a66aa06c8c85","created_at":"2023-03-09T13:13:21.700Z","updated_at":"2023-09-19T17:45:53.094Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2FalignfigR/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5484412,"commits_count":854605934,"contributors_count":31158184,"owners_count":909540,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"sjspielman/alignfigr","html_url":"https://github.com/sjspielman/alignfigr","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-08T16:25:44.637Z","updated_at":"2025-09-08T16:25:44.637Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2Falignfigr","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sjspielman%2Falignfigr/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10168351,"issues_count":32015117,"pull_requests_count":100242866,"authors_count":10730290,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-07-12T09:22:42.578Z","updated_at":"2022-07-12T09:22:42.578Z","repository_link":"https://github.com/sjspielman/alignfigR/blob/master/DESCRIPTION","dependencies":[{"id":154055594,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.1.1","direct":true,"kind":"depends","optional":false},{"id":154055595,"package_name":"ggplot2","ecosystem":"cran","requirements":"\u003e= 2.1.0","direct":true,"kind":"imports","optional":false},{"id":154055596,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-08T11:28:44.023Z","updated_at":"2025-10-07T08:27:03.012Z","avatar_url":"https://github.com/sjspielman.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["software","bioinformatics","comparative-genomics","evolution","phylogenetics","statistical-methods"],"project_url":"https://science.ecosyste.ms/api/v1/projects/74956","html_url":"https://science.ecosyste.ms/projects/74956"}