{"id":77173,"name":null,"description":" Inferring patient-specific regulatory alterations ","url":"https://github.com/daisybio/DysRegNet_package","last_synced_at":"2025-09-08T20:55:45.417Z","repository":{"id":40261001,"uuid":"449047403","full_name":"daisybio/DysRegNet_package","owner":"daisybio","description":" Inferring patient-specific regulatory alterations ","archived":false,"fork":false,"pushed_at":"2024-12-06T13:57:01.000Z","size":242,"stargazers_count":3,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-08-19T12:28:18.227Z","etag":null,"topics":["bioinformatics","gene-regulatory-network","linear-models","rna-seq","statistics","systems-biology","transcriptomics"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/daisybio.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-01-17T21:01:27.000Z","updated_at":"2025-05-12T08:21:47.000Z","dependencies_parsed_at":"2024-03-21T17:30:33.664Z","dependency_job_id":"dace2d11-b625-47aa-a170-5225825b8939","html_url":"https://github.com/daisybio/DysRegNet_package","commit_stats":null,"previous_names":["daisybio/dysregnet_package","biomedbigdata/dysregnet_package"],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/daisybio/DysRegNet_package","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daisybio%2FDysRegNet_package","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daisybio%2FDysRegNet_package/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daisybio%2FDysRegNet_package/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daisybio%2FDysRegNet_package/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daisybio","download_url":"https://codeload.github.com/daisybio/DysRegNet_package/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daisybio%2FDysRegNet_package/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274231482,"owners_count":25245601,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"daisybio","name":"Data Science in Systems Biology","uuid":"43636148","kind":"organization","description":"The research group Data Science in Systems Biology at the School of Life Sciences, Technical University of Munich","email":"markus.list@tum.de","website":"daisybio.de","location":"Freising, Germany","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/43636148?v=4","repositories_count":1,"last_synced_at":"2024-06-08T09:32:26.432Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/daisybio","funding_links":[],"total_stars":0,"followers":18,"following":0,"created_at":"2022-11-03T18:06:59.709Z","updated_at":"2024-06-08T09:32:27.148Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daisybio","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daisybio/repositories"},"packages":null,"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"daisybio/DysRegNet_package","html_url":"https://github.com/daisybio/DysRegNet_package","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-08T20:55:37.280Z","updated_at":"2025-09-08T20:55:37.280Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daisybio%2FDysRegNet_package","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daisybio%2FDysRegNet_package/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10172081,"issues_count":31993946,"pull_requests_count":100251918,"authors_count":10732524,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"PushEvent":2,"ForkEvent":1},"last_year":{"WatchEvent":1,"PushEvent":2,"ForkEvent":1}},"keywords":["bioinformatics","gene-regulatory-network","linear-models","rna-seq","statistics","systems-biology","transcriptomics"],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-17T19:00:56.930Z","updated_at":"2022-08-17T19:00:56.930Z","repository_link":"https://github.com/daisybio/DysRegNet_package/blob/main/setup.py","dependencies":[{"id":1865458942,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":1865458943,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=","direct":true,"kind":"runtime","optional":false},{"id":1865458944,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":1865458945,"package_name":"statsmodels","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":1865458946,"package_name":"tqdm","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":1865458947,"package_name":"sklearn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/python-publish.yml","sha":null,"kind":"manifest","created_at":"2023-01-28T20:10:20.770Z","updated_at":"2023-01-28T20:10:20.770Z","repository_link":"https://github.com/daisybio/DysRegNet_package/blob/main/.github/workflows/python-publish.yml","dependencies":[{"id":7213808262,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7213808263,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7213808264,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"27b31702a0e7fc50959f5ad993c78deac1bdfc29","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-08T20:51:20.930Z","updated_at":"2025-10-07T08:27:46.035Z","avatar_url":"https://github.com/daisybio.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1111/bph.17395"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/77173","html_url":"https://science.ecosyste.ms/projects/77173"}