{"id":808520,"name":"Enhancing short-read sequencing simulation: Updates to NEAT","description":"Enhancing short-read sequencing simulation: Updates to NEAT - Published in JOSS (2026)","url":"https://github.com/ncsa/neat","last_synced_at":"2026-05-04T12:00:27.923Z","repository":{"id":37501225,"uuid":"349561691","full_name":"ncsa/NEAT","owner":"ncsa","description":"NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.","archived":false,"fork":false,"pushed_at":"2026-05-04T08:18:30.000Z","size":153774,"stargazers_count":71,"open_issues_count":7,"forks_count":24,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-05-04T10:23:22.480Z","etag":null,"topics":["bioinformatics","bioinformatics-tool"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ncsa.png","metadata":{"files":{"readme":"README.md","changelog":"ChangeLog.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2021-03-19T21:40:14.000Z","updated_at":"2026-05-03T16:23:10.000Z","dependencies_parsed_at":"2023-01-29T22:46:03.303Z","dependency_job_id":"f0494ed7-ee6a-41ae-9bba-914a75f0ce09","html_url":"https://github.com/ncsa/NEAT","commit_stats":null,"previous_names":[],"tags_count":28,"template":false,"template_full_name":null,"purl":"pkg:github/ncsa/NEAT","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ncsa%2FNEAT","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ncsa%2FNEAT/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ncsa%2FNEAT/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ncsa%2FNEAT/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ncsa","download_url":"https://codeload.github.com/ncsa/NEAT/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ncsa%2FNEAT/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32606413,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-04T10:08:07.713Z","status":"ssl_error","status_checked_at":"2026-05-04T10:08:02.005Z","response_time":58,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":null,"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"ncsa/NEAT","html_url":"https://github.com/ncsa/NEAT","last_synced_at":"2026-05-03T17:05:59.899Z","status":null,"issues_count":49,"pull_requests_count":36,"avg_time_to_close_issue":31197072.470588237,"avg_time_to_close_pull_request":917897.75,"issues_closed_count":34,"pull_requests_closed_count":28,"pull_request_authors_count":5,"issue_authors_count":29,"avg_comments_per_issue":3.2448979591836733,"avg_comments_per_pull_request":0.16666666666666666,"merged_pull_requests_count":23,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":5,"past_year_pull_requests_count":8,"past_year_avg_time_to_close_issue":87381.0,"past_year_avg_time_to_close_pull_request":15932.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":4,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.2,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":3,"created_at":"2025-08-29T13:17:13.735Z","updated_at":"2026-05-03T17:05:59.900Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ncsa%2FNEAT","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ncsa%2FNEAT/issues","issue_labels_count":{"bug":14,"enhancement":3,"question":1,"duplicate":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":40,"COLLABORATOR":9},"pull_request_author_associations_count":{"COLLABORATOR":31,"NONE":5},"issue_authors":{"joshfactorial":9,"dani-ture":5,"nilchia":3,"mattbird567":3,"aldosr":2,"chenyenchung":2,"jelisavetailic":2,"shafayetrahat":2,"jlmarlo":1,"yaroslovakia":1,"Npaffen":1,"sfragkoul":1,"destinymullens":1,"ananya-0729":1,"lukatop":1,"alyssa-ab":1,"yvanw":1,"xmy1990":1,"NuriaQueralt":1,"georgiiprovisor":1,"ShadeNiece":1,"PratyushTandale":1,"giobus75":1,"harrytchild":1,"wm75":1,"MarcNiebel":1,"gwct":1,"DrinnanSante":1,"MTDouglas":1},"pull_request_authors":{"joshfactorial":28,"keshav-gandhi":3,"zlian1758":3,"chenyenchung":1,"nailikS":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-05-04T00:00:36.985Z","repositories_count":14502146,"issues_count":34273016,"pull_requests_count":112298089,"authors_count":11254431,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":4,"COLLABORATOR":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":6,"NONE":2},"past_year_issue_authors":{"chenyenchung":2,"joshfactorial":1,"mattbird567":1,"ShadeNiece":1},"past_year_pull_request_authors":{"joshfactorial":5,"chenyenchung":1,"keshav-gandhi":1,"nailikS":1},"maintainers":[{"login":"joshfactorial","count":37,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/joshfactorial"},{"login":"keshav-gandhi","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/keshav-gandhi"}],"active_maintainers":[{"login":"joshfactorial","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/joshfactorial"},{"login":"keshav-gandhi","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/keshav-gandhi"}]},"events":{"total":{"ReleaseEvent":4,"DeleteEvent":44,"PullRequestEvent":50,"ForkEvent":5,"IssuesEvent":52,"WatchEvent":13,"IssueCommentEvent":88,"PushEvent":182,"PullRequestReviewCommentEvent":11,"PullRequestReviewEvent":15,"CreateEvent":42},"last_year":{"ReleaseEvent":1,"DeleteEvent":37,"PullRequestEvent":30,"ForkEvent":4,"IssuesEvent":33,"WatchEvent":8,"IssueCommentEvent":42,"PushEvent":118,"PullRequestReviewEvent":13,"PullRequestReviewCommentEvent":11,"CreateEvent":31}},"keywords":["bioinformatics","bioinformatics-tool"],"dependencies":null,"score":null,"created_at":"2026-05-04T12:00:06.025Z","updated_at":"2026-05-06T17:00:08.776Z","avatar_url":"https://github.com/ncsa.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1371/journal.pone.0167047"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/808520","html_url":"https://science.ecosyste.ms/projects/808520"}