{"id":889,"name":"MiscMetabar","description":"MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis - Published in JOSS (2023)","url":"https://github.com/adrientaudiere/miscmetabar","last_synced_at":"2025-09-04T16:11:26.901Z","repository":{"id":44094040,"uuid":"268765075","full_name":"adrientaudiere/MiscMetabar","owner":"adrientaudiere","description":"R package MiscMetabar: Miscellaneous functions for metabarcoding analysis","archived":false,"fork":false,"pushed_at":"2025-09-02T12:27:59.000Z","size":358256,"stargazers_count":18,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-09-02T19:35:12.589Z","etag":null,"topics":["amplicon","amplicon-sequencing","biodiversity-informatics","ecology","illumina","metabarcoding","ngs-analysis","package","r","r-package","visualization"],"latest_commit_sha":null,"homepage":"https://adrientaudiere.github.io/MiscMetabar/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/adrientaudiere.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"citation.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-06-02T10:02:00.000Z","updated_at":"2025-07-09T14:16:08.000Z","dependencies_parsed_at":"2025-09-02T19:30:04.013Z","dependency_job_id":null,"html_url":"https://github.com/adrientaudiere/MiscMetabar","commit_stats":null,"previous_names":[],"tags_count":31,"template":false,"template_full_name":null,"purl":"pkg:github/adrientaudiere/MiscMetabar","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/adrientaudiere","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273596972,"owners_count":25134262,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"adrientaudiere","name":"Adrien Taudiere","uuid":"6680165","kind":"user","description":"Professional website: https://adrientaudiere.com","email":"","website":"https://adrientaudiere.com","location":null,"twitter":null,"company":"IdEst","icon_url":"https://avatars.githubusercontent.com/u/6680165?u=05279cc37858a09c01acb6e5cc298d457c49e421\u0026v=4","repositories_count":9,"last_synced_at":"2023-08-28T07:42:11.070Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/adrientaudiere","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T23:56:41.178Z","updated_at":"2023-08-28T07:42:11.360Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/adrientaudiere","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/adrientaudiere/repositories"},"packages":[{"id":8888198,"name":"MiscMetabar","ecosystem":"cran","description":"Miscellaneous Functions for Metabarcoding Analysis","homepage":"https://github.com/adrientaudiere/MiscMetabar","licenses":"AGPL-3","normalized_licenses":["AGPL-3.0"],"repository_url":"https://github.com/adrientaudiere/MiscMetabar","keywords_array":[],"namespace":null,"versions_count":9,"first_release_published_at":"2024-02-17T00:00:00.000Z","latest_release_published_at":"2025-06-21T00:00:00.000Z","latest_release_number":"0.14.3","last_synced_at":"2025-09-03T19:48:27.733Z","created_at":"2024-02-17T21:19:38.608Z","updated_at":"2025-09-03T19:48:27.734Z","registry_url":"https://cran.r-project.org/package=MiscMetabar","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/MiscMetabar/MiscMetabar.pdf","metadata":{},"repo_metadata":{"id":44094040,"uuid":"268765075","full_name":"adrientaudiere/MiscMetabar","owner":"adrientaudiere","description":"R package MiscMetabar: Miscellaneous functions for metabarcoding analysis","archived":false,"fork":false,"pushed_at":"2023-12-19T13:27:09.000Z","size":166636,"stargazers_count":7,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2023-12-19T15:56:52.328Z","etag":null,"topics":["ecology","metabarcoding","ngs-analysis","package","r"],"latest_commit_sha":null,"homepage":"https://adrientaudiere.github.io/MiscMetabar/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/adrientaudiere.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"citation.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2020-06-02T10:02:00.000Z","updated_at":"2024-02-10T07:20:07.460Z","dependencies_parsed_at":"2023-12-19T15:56:58.865Z","dependency_job_id":null,"html_url":"https://github.com/adrientaudiere/MiscMetabar","commit_stats":null,"previous_names":[],"tags_count":15,"template":null,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/adrientaudiere","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":217592833,"owners_count":16201538,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"adrientaudiere","name":"Adrien Taudiere","uuid":"6680165","kind":"user","description":"Professional website: https://adrientaudiere.com","email":"","website":"https://adrientaudiere.com","location":null,"twitter":null,"company":"IdEst","icon_url":"https://avatars.githubusercontent.com/u/6680165?u=05279cc37858a09c01acb6e5cc298d457c49e421\u0026v=4","repositories_count":9,"last_synced_at":"2023-08-28T07:42:11.070Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/adrientaudiere","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T23:56:41.178Z","updated_at":"2023-08-28T07:42:11.360Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/adrientaudiere","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/adrientaudiere/repositories"},"tags":[{"name":"v0.7.5-beta","sha":"0053012c2e9bbc78c4a500ee8d0e9845355ca898","kind":"commit","published_at":"2024-02-10T06:43:16.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.5-beta","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.5-beta","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.5-beta","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.5-beta/manifests"},{"name":"v.0.7.5-alpha","sha":"0053012c2e9bbc78c4a500ee8d0e9845355ca898","kind":"commit","published_at":"2024-02-10T06:43:16.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v.0.7.5-alpha","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v.0.7.5-alpha","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v.0.7.5-alpha","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v.0.7.5-alpha/manifests"},{"name":"v0.7.5","sha":"e862ec51a04c5fd27b2af77335fc97c48fb4ea3e","kind":"commit","published_at":"2024-02-10T06:08:09.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.5","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.5","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.5/manifests"},{"name":"v0.7.4","sha":"14da7e57313b554d85433e54ab21c84ede2c65f8","kind":"commit","published_at":"2024-02-09T14:10:56.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.4","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.4","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.4/manifests"},{"name":"v0.7.3","sha":"e81237da10409a8c4f34656d3b75c7d9c117a32c","kind":"commit","published_at":"2024-02-07T14:13:40.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.3","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.3/manifests"},{"name":"v0.7.2-alpha","sha":"4cf7b3f8d53b708eb97f58faad3fbc15a22a6bad","kind":"commit","published_at":"2024-02-07T12:18:46.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.2-alpha","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.2-alpha","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.2-alpha","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.2-alpha/manifests"},{"name":"v0.7.2","sha":"0cfdd98d3a8fb787cfa523814315b58834c281b4","kind":"commit","published_at":"2024-02-07T10:42:58.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.2","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.2","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.2/manifests"},{"name":"v0.7.1","sha":"8b417a49846befff6c422630e79150340c8f3a44","kind":"commit","published_at":"2024-02-06T21:43:21.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.1","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.1/manifests"},{"name":"v0.7.0","sha":"304d0fc5461e0d776430b70ece4cc72f76ecbde4","kind":"commit","published_at":"2024-02-06T09:57:20.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.7.0","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.7.0/manifests"},{"name":"v0.6.1","sha":"e6958216d114e172b67bae97728d555d664adf92","kind":"commit","published_at":"2024-01-23T07:53:23.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.6.1","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.6.1/manifests"},{"name":"v0.6.0","sha":"62353036af8924cdaed0f4ee6eccfa6ffe3fe5a6","kind":"commit","published_at":"2024-01-22T14:14:39.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.6.0","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.6.0/manifests"},{"name":"v0.52","sha":"dd6ec66616b5b66600eb62576d8e4a10108d3618","kind":"commit","published_at":"2023-12-13T11:43:31.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.52","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.52","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.52","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.52/manifests"},{"name":"v0.41","sha":"026e5a794dff5ac2d60fd31f0a9f75bbad64649c","kind":"commit","published_at":"2023-10-10T15:27:10.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.41","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.41","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.41","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.41/manifests"},{"name":"v.0.3","sha":"939338b5b3b445b1c407a10512fd4918d03f54cd","kind":"commit","published_at":"2023-03-13T15:24:12.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v.0.3","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v.0.3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v.0.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v.0.3/manifests"},{"name":"v0.23","sha":"9fa4d47f14e83f2e2548bab56aba6ada6cada4b4","kind":"commit","published_at":"2023-02-02T17:09:29.000Z","download_url":"https://codeload.github.com/adrientaudiere/MiscMetabar/tar.gz/v0.23","html_url":"https://github.com/adrientaudiere/MiscMetabar/releases/tag/v0.23","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.23","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/tags/v0.23/manifests"}]},"repo_metadata_updated_at":"2024-09-02T17:52:31.355Z","dependent_packages_count":0,"downloads":707,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":84.74997818308752,"dependent_repos_count":36.15935072868488,"dependent_packages_count":28.20490444192338,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":49.704744451231925},"purl":"pkg:cran/MiscMetabar","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/MiscMetabar","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/MiscMetabar","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/MiscMetabar/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/MiscMetabar/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/MiscMetabar/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/MiscMetabar/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/MiscMetabar/related_packages","maintainers":[{"uuid":"adrien.taudiere@zaclys.net","login":null,"name":"Adrien Taudière","email":"adrien.taudiere@zaclys.net","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2024-02-17T21:19:39.816Z","updated_at":"2024-02-17T21:19:39.816Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/adrien.taudiere@zaclys.net/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26169,"maintainers_count":14292,"namespaces_count":0,"keywords_count":8317,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-04T07:00:40.033Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"id":9624970,"full_name":"adrientaudiere/MiscMetabar","default_branch":"master","committers":[{"name":"Adrien Taudiere","email":"adrien.taudiere@tutanota.com","login":"adrientaudiere","count":496},{"name":"adrien","email":"adrien@leGarsBelou","login":null,"count":8},{"name":"adrien","email":"adrien@leGarsBelou.leGarsBelou","login":null,"count":6},{"name":"Markus Ankenbrand","email":"markus@ankenbrand.me","login":"iimog","count":1}],"total_commits":511,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":127.75,"dds":0.02935420743639927,"past_year_committers":[{"name":"Adrien Taudière","email":"adrien.taudiere@zaclys.net","login":"adrientaudiere","count":51},{"name":"adrien","email":"adrien@leGarsBelou","login":null,"count":8},{"name":"adrien","email":"adrien@leGarsBelou.leGarsBelou","login":null,"count":6}],"past_year_total_commits":65,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":21.666666666666668,"past_year_dds":0.2153846153846154,"last_synced_at":"2025-08-07T06:05:59.864Z","last_synced_commit":"a6a8159b024056267bb11e6b0d3b657f97a76c7a","created_at":"2025-04-11T10:56:52.406Z","updated_at":"2025-08-07T06:05:59.864Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-27T00:00:29.048Z","repositories_count":5479765,"commits_count":853308191,"contributors_count":31095157,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"adrientaudiere/MiscMetabar","html_url":"https://github.com/adrientaudiere/MiscMetabar","last_synced_at":"2025-08-31T11:25:45.311Z","status":null,"issues_count":18,"pull_requests_count":92,"avg_time_to_close_issue":295541.17647058825,"avg_time_to_close_pull_request":10885.714285714286,"issues_closed_count":17,"pull_requests_closed_count":91,"pull_request_authors_count":2,"issue_authors_count":8,"avg_comments_per_issue":2.2777777777777777,"avg_comments_per_pull_request":0.03260869565217391,"merged_pull_requests_count":86,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":26,"past_year_avg_time_to_close_issue":284921.0,"past_year_avg_time_to_close_pull_request":100.64,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":25,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":25,"created_at":"2025-04-11T10:56:53.661Z","updated_at":"2025-09-03T04:12:32.947Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/adrientaudiere%2FMiscMetabar/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":9,"CONTRIBUTOR":7,"OWNER":2},"pull_request_author_associations_count":{"OWNER":110,"CONTRIBUTOR":1},"issue_authors":{"iimog":7,"tkchafin":4,"adrientaudiere":2,"gabyr2":1,"ddsjoberg":1,"Julie-lmq":1,"RachBioHaz":1,"garanceleroy":1},"pull_request_authors":{"adrientaudiere":110,"iimog":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10068975,"issues_count":31218164,"pull_requests_count":95228988,"authors_count":10688649,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":2},"past_year_pull_request_author_associations_count":{"OWNER":33},"past_year_issue_authors":{"Julie-lmq":1,"RachBioHaz":1},"past_year_pull_request_authors":{"adrientaudiere":33},"maintainers":[{"login":"adrientaudiere","count":112,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adrientaudiere"}],"active_maintainers":[{"login":"adrientaudiere","count":33,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adrientaudiere"}]},"events":{"total":{"CreateEvent":5,"ReleaseEvent":5,"IssuesEvent":2,"WatchEvent":4,"IssueCommentEvent":4,"PushEvent":41,"PullRequestEvent":19},"last_year":{"CreateEvent":5,"ReleaseEvent":5,"IssuesEvent":2,"WatchEvent":4,"IssueCommentEvent":4,"PushEvent":41,"PullRequestEvent":19}},"keywords":["amplicon","amplicon-sequencing","biodiversity-informatics","ecology","illumina","metabarcoding","ngs-analysis","package","r","r-package","visualization"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-19T04:00:29.955Z","updated_at":"2022-09-19T04:00:29.955Z","repository_link":"https://github.com/adrientaudiere/MiscMetabar/blob/master/DESCRIPTION","dependencies":[{"id":5381225576,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.5.0","direct":true,"kind":"depends","optional":false},{"id":5381225577,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5381225578,"package_name":"phyloseq","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5381225579,"package_name":"dada2","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5381225580,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5381225581,"package_name":"lifecycle","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5381225582,"package_name":"lulu","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225583,"package_name":"metacoder","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225584,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225585,"package_name":"vegan","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225586,"package_name":"mixtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225587,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225588,"package_name":"DECIPHER","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225589,"package_name":"DESeq2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225590,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225591,"package_name":"circlize","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225592,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225593,"package_name":"gridExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225594,"package_name":"here","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225595,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225596,"package_name":"multcompView","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225597,"package_name":"networkD3","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225598,"package_name":"pbapply","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225599,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225600,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225601,"package_name":"speedyseq","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225602,"package_name":"venneuler","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225603,"package_name":"viridis","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5381225604,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pkgdown.yaml","sha":null,"kind":"manifest","created_at":"2023-02-14T18:16:00.513Z","updated_at":"2023-02-14T18:16:00.513Z","repository_link":"https://github.com/adrientaudiere/MiscMetabar/blob/master/.github/workflows/pkgdown.yaml","dependencies":[{"id":7665640120,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7665640122,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7665640123,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7665640125,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7665640132,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"v4.4.1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2023-12-18T14:44:04.950Z","updated_at":"2023-12-18T14:44:04.950Z","repository_link":"https://github.com/adrientaudiere/MiscMetabar/blob/master/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":15162988987,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15162988992,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15162988996,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15162988999,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15162989002,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/draft-pdf.yaml","sha":null,"kind":"manifest","created_at":"2023-12-18T14:44:04.983Z","updated_at":"2023-12-18T14:44:04.983Z","repository_link":"https://github.com/adrientaudiere/MiscMetabar/blob/master/.github/workflows/draft-pdf.yaml","dependencies":[{"id":15162989460,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15162989463,"package_name":"openjournals/openjournals-draft-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":15162989467,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-coverage.yaml","sha":null,"kind":"manifest","created_at":"2023-12-18T14:44:05.004Z","updated_at":"2023-12-18T14:44:05.004Z","repository_link":"https://github.com/adrientaudiere/MiscMetabar/blob/master/.github/workflows/test-coverage.yaml","dependencies":[{"id":15162989771,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15162989776,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15162989780,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15162989782,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]}],"score":10.839110212709775,"created_at":"2025-09-04T09:17:40.790Z","updated_at":"2025-10-07T08:04:28.170Z","avatar_url":"https://github.com/adrientaudiere.png","language":"R","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":707,"funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.06038"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/889","html_url":"https://science.ecosyste.ms/projects/889","bibtex_url":"https://science.ecosyste.ms/projects/889/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/889/export.apalike"}