{"id":9259,"name":"2024-chelicerate-phylogenomics-peptides","description":"Analyzes the outputs of the chelicerate noveltree run and subsequent trait-mapping for association with host detection suppression (phylo-profiling) and predicts peptides from those proteins","url":"https://github.com/arcadia-science/2024-chelicerate-phylogenomics-peptides","last_synced_at":"2025-09-04T20:26:00.194Z","repository":{"id":292414042,"uuid":"785879538","full_name":"Arcadia-Science/2024-chelicerate-phylogenomics-peptides","owner":"Arcadia-Science","description":"Analyzes the outputs of the chelicerate noveltree run and subsequent trait-mapping for association with host detection suppression (phylo-profiling) and predicts peptides from those proteins","archived":false,"fork":false,"pushed_at":"2025-05-09T20:25:40.000Z","size":106737,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-05-09T20:47:10.678Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Arcadia-Science.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-04-12T20:29:12.000Z","updated_at":"2025-05-09T20:25:44.000Z","dependencies_parsed_at":"2025-05-09T20:57:26.059Z","dependency_job_id":null,"html_url":"https://github.com/Arcadia-Science/2024-chelicerate-phylogenomics-peptides","commit_stats":null,"previous_names":["arcadia-science/2024-chelicerate-phylogenomics-peptides"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/Arcadia-Science/2024-chelicerate-phylogenomics-peptides","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Arcadia-Science%2F2024-chelicerate-phylogenomics-peptides","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Arcadia-Science%2F2024-chelicerate-phylogenomics-peptides/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Arcadia-Science%2F2024-chelicerate-phylogenomics-peptides/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Arcadia-Science%2F2024-chelicerate-phylogenomics-peptides/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Arcadia-Science","download_url":"https://codeload.github.com/Arcadia-Science/2024-chelicerate-phylogenomics-peptides/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Arcadia-Science%2F2024-chelicerate-phylogenomics-peptides/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273667469,"owners_count":25146581,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Arcadia-Science","name":"Arcadia Science","uuid":"104392636","kind":"organization","description":"","email":null,"website":"https://www.arcadiascience.com/","location":"United States of America","twitter":"ArcadiaScience","company":null,"icon_url":"https://avatars.githubusercontent.com/u/104392636?v=4","repositories_count":16,"last_synced_at":"2023-03-08T19:20:39.673Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Arcadia-Science","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-18T09:34:27.268Z","updated_at":"2023-03-08T19:20:39.696Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Arcadia-Science","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Arcadia-Science/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"Arcadia-Science/2024-chelicerate-phylogenomics-peptides","html_url":"https://github.com/Arcadia-Science/2024-chelicerate-phylogenomics-peptides","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T04:49:19.195Z","updated_at":"2025-08-31T04:49:19.195Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Arcadia-Science%2F2024-chelicerate-phylogenomics-peptides","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Arcadia-Science%2F2024-chelicerate-phylogenomics-peptides/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"MEMBER":1},"issue_authors":{},"pull_request_authors":{"taylorreiter":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10081055,"issues_count":31277800,"pull_requests_count":96105963,"authors_count":10693660,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"MEMBER":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"taylorreiter":1},"maintainers":[{"login":"taylorreiter","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/taylorreiter"}],"active_maintainers":[{"login":"taylorreiter","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/taylorreiter"}]},"events":{"total":{"ReleaseEvent":1,"DeleteEvent":1,"PushEvent":2,"PublicEvent":1,"PullRequestEvent":1,"PullRequestReviewEvent":1,"CreateEvent":1},"last_year":{"ReleaseEvent":1,"DeleteEvent":1,"PushEvent":2,"PublicEvent":1,"PullRequestEvent":1,"PullRequestReviewEvent":1,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/lint.yml","sha":null,"kind":"manifest","created_at":"2025-05-09T20:57:22.386Z","updated_at":"2025-05-09T20:57:22.386Z","repository_link":"https://github.com/Arcadia-Science/2024-chelicerate-phylogenomics-peptides/blob/main/.github/workflows/lint.yml","dependencies":[{"id":23059073181,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":23059073182,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/run-demo-pipeline.yml","sha":null,"kind":"manifest","created_at":"2025-05-09T20:57:22.672Z","updated_at":"2025-05-09T20:57:22.672Z","repository_link":"https://github.com/Arcadia-Science/2024-chelicerate-phylogenomics-peptides/blob/main/.github/workflows/run-demo-pipeline.yml","dependencies":[{"id":23059073260,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":23059073261,"package_name":"snakemake/snakemake-github-action","ecosystem":"actions","requirements":"v1.24.0","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-05-09T20:57:25.909Z","updated_at":"2025-05-09T20:57:25.909Z","repository_link":"https://github.com/Arcadia-Science/2024-chelicerate-phylogenomics-peptides/blob/main/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:50:30.680Z","updated_at":"2025-10-07T08:06:31.497Z","avatar_url":"https://github.com/Arcadia-Science.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/https://doi.org/10.57844/arcadia-gfhy-d2f3"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/9259","html_url":"https://science.ecosyste.ms/projects/9259","bibtex_url":"https://science.ecosyste.ms/projects/9259/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/9259/export.apalike"}