LDDS 46% confidence

LDDS: Python package for computing and visualizing Lagrangian Descriptors for Dynamical Systems - Published in JOSS (2021)

Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models 46% confidence

Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models - Published in JOSS (2019)

ESAT 46% confidence

ESAT: Environmental Source Apportionment Toolkit Python package - Published in JOSS (2024)

SMART 46% confidence

SMART: Spatial Modeling Algorithms for Reactions and Transport - Published in JOSS (2023)

CUDA-METRO 45% confidence

CUDA-METRO: Parallel Metropolis Monte Carlo for 2D Atomistic Spin Texture Simulation - Published in JOSS (2025)

MODULO 45% confidence

MODULO: A Python toolbox for data-driven modal decomposition - Published in JOSS (2024)

PathSim - A System Simulation Framework 45% confidence

PathSim - A System Simulation Framework - Published in JOSS (2025)

pyPLNmodels 45% confidence

pyPLNmodels: A Python package to analyze multivariate high-dimensional count data - Published in JOSS (2024)

Metrics As Scores 45% confidence

Metrics As Scores: A Tool- and Analysis Suite and Interactive Application for Exploring Context-Dependent Distributions - Published in JOSS (2023)

multipers 45% confidence

multipers: Multiparameter Persistence for Machine Learning - Published in JOSS (2024)

bwsample 44% confidence

bwsample: Processing Best-Worst Scaling data - Published in JOSS (2021)

pyfeats 44% confidence

[GitHub 2021] Open source software for image feature extraction.

qgs 44% confidence

qgs: A flexible Python framework of reduced-order multiscale climate models - Published in JOSS (2020)

rFBP 43% confidence

rFBP: Replicated Focusing Belief Propagation algorithm - Published in JOSS (2020)

ASTE 43% confidence

ASTE: An artificial solver testing environment for partitioned coupling with preCICE - Published in JOSS (2024)

pySRURGS - a python package for symbolic regression by uniform random global search 43% confidence

pySRURGS - a python package for symbolic regression by uniform random global search - Published in JOSS (2019)

HARE 43% confidence

HARE: A Python workflow for analyzing genomic feature enrichment in GWAS datasets - Published in JOSS (2024)

Diart 43% confidence

Diart: A Python Library for Real-Time Speaker Diarization - Published in JOSS (2024)

SolarSpatialTools 43% confidence

SolarSpatialTools: A Python package for spatial solar energy analyses - Published in JOSS (2024)

Re-Envisioning Numerical Information Field Theory (NIFTy.re) 43% confidence

Re-Envisioning Numerical Information Field Theory (NIFTy.re): A Library for Gaussian Processes and Variational Inference - Published in JOSS (2024)

llama 43% confidence

UPOsHam 43% confidence

UPOsHam: A Python package for computing unstable periodic orbits in two-degree-of-freedom Hamiltonian systems - Published in JOSS (2020)

Geometric nested sampling 43% confidence

Geometric nested sampling: sampling from distributions defined on non-trivial geometries - Published in JOSS (2020)

memerewardmodel-qwen 43% confidence

pyMannKendall 43% confidence

pyMannKendall: a python package for non parametric Mann Kendall family of trend tests. - Published in JOSS (2019)

GrainSizeTools 43% confidence

GrainSizeTools: a Python script for grain size analysis and paleopiezometry based on grain size - Published in JOSS (2018)

cellanneal 43% confidence

cellanneal: A user-friendly deconvolution software for transcriptomics data - Published in JOSS (2024)

MorphoPy 43% confidence

MorphoPy: A python package for feature extraction of neural morphologies. - Published in JOSS (2020)

Elephas 43% confidence

Elephas: Distributed Deep Learning with Keras & Spark - Published in JOSS (2022)

NORDic 43% confidence

NORDic: a Network-Oriented package for the Repurposing of Drugs - Published in JOSS (2023)

Dimensionally Aligned Signal Projection Algorithms Library 43% confidence

Dimensionally Aligned Signal Projection Algorithms Library - Published in JOSS (2024)

scikit-fem 43% confidence

scikit-fem: A Python package for finite element assembly - Published in JOSS (2020)

libscientific 43% confidence

libscientific: A Powerful C Library for Multivariate Analysis - Published in JOSS (2023)

Φ-ML 43% confidence

Φ-ML: Intuitive Scientific Computing with Dimension Types for Jax, PyTorch, TensorFlow & NumPy - Published in JOSS (2024)

ko 43% confidence

Kyber Odyssey: Charting a course for secure innovation in a post-Crowdstrike world

SenAOReFoc 43% confidence

SenAOReFoc: A Closed-Loop Sensorbased Adaptive Optics and Remote Focusing Control Software - Published in JOSS (2022)

scipy 42% confidence

SciPy library main repository

Automatic Computation for Robot Design (ACRoD) 42% confidence

Automatic Computation for Robot Design (ACRoD): A Python package for numerical calculation of Jacobian of a robot at a given configuration around a specified end-effector point - Published in JOSS (2024)

Pore2Chip 42% confidence

Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design - Published in JOSS (2025)

PyDMD 42% confidence

PyDMD: Python Dynamic Mode Decomposition - Published in JOSS (2018)

SESAMI APP 42% confidence

SESAMI APP: An Accessible Interface for Surface Area Calculation of Materials from Adsorption Isotherms - Published in JOSS (2023)

LangFair 42% confidence

LangFair: A Python Package for Assessing Bias and Fairness in Large Language Model Use Cases - Published in JOSS (2025)

OptiCommPy 42% confidence

OptiCommPy: Open-source Simulation of Fiber Optic Communications with Python - Published in JOSS (2024)

ddop 42% confidence

ddop: A python package for data-driven operations management - Published in JOSS (2021)

ChemPy 41% confidence

ChemPy: A package useful for chemistry written in Python - Published in JOSS (2018)

epipack 41% confidence

epipack: An infectious disease modeling package for Python - Published in JOSS (2021)

pymgpipe 41% confidence

pymgpipe: microbiome metabolic modeling in Python - Published in JOSS (2023)

ChainConsumer 41% confidence

ChainConsumer - Published in JOSS (2016)

datafold 41% confidence

datafold: data-driven models for point clouds and time series on manifolds - Published in JOSS (2020)

GraphSL 41% confidence

GraphSL: An Open-Source Library for Graph Source Localization Approaches and Benchmark Datasets - Published in JOSS (2024)

XCALibre.jl 40% confidence

XCALibre.jl: A Julia XPU unstructured finite volume Computational Fluid Dynamics library - Published in JOSS (2025)

Hypredrive 40% confidence

Hypredrive: High-level interface for solving linear systems with hypre - Published in JOSS (2024)

Limace.jl 40% confidence

Limace.jl: A Julia package to compute hydromagnetic modes in spherical domains - Published in JOSS (2025)

GECo 40% confidence

GECo: A collection of solvers for the self-gravitating Vlasov equations - Published in JOSS (2023)

iceFEM 40% confidence

iceFEM: A FreeFem package for wave induced ice-shelf vibrations - Published in JOSS (2021)

RTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Method 40% confidence

RTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Method - Published in JOSS (2023)

matpower 40% confidence

MATPOWER – steady state power flow simulation and optimization for MATLAB and Octave

CADET-Core 5.0 40% confidence

CADET-Core 5.0: High-Performance Solver for Advanced Biotechnology Process Modeling - Published in JOSS (2025)

271-belm-high-quality-exact-inversion-sampler-of-diffusion-models 40% confidence

diman 40% confidence

diman: A Clojure Package for Dimensional Analysis - Published in JOSS (2022)

BurnMan -- a Python toolkit for planetary geophysics, geochemistry and thermodynamics 40% confidence

BurnMan -- a Python toolkit for planetary geophysics, geochemistry and thermodynamics - Published in JOSS (2023)

msmhelper 40% confidence

msmhelper: A Python package for Markov state modeling of protein dynamics - Published in JOSS (2023)

NeMo 40% confidence

A scalable generative AI framework built for researchers and developers working on Large Language Models, Multimodal, and Speech AI (Automatic Speech Recognition and Text-to-Speech)

Spectral Connectivity 40% confidence

Spectral Connectivity: a python package for computing multitaper spectral estimates and frequency-domain brain connectivity measures on the CPU and GPU - Published in JOSS (2022)

R3D2 40% confidence

R3D2: Relativistic Reactive Riemann problem solver for Deflagrations and Detonations - Published in JOSS (2016)

PyClustering 40% confidence

PyClustering: Data Mining Library - Published in JOSS (2019)

PyBWE 40% confidence

PyBWE: Python tools for Bandwidth Extrapolation of planetary radar signals - Published in JOSS (2024)

xraybinaryorbit 40% confidence

xraybinaryorbit: A Python Package for Analyzing Orbital Modulations in X-ray Binaries - Published in JOSS (2024)

pyemgpipeline 40% confidence

pyemgpipeline: A Python package for electromyography processing - Published in JOSS (2022)

UncertainSCI 40% confidence

UncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelines - Published in JOSS (2023)

gridwxcomp 40% confidence

gridwxcomp: A Python package to evaluate and interpolate biases between station and gridded weather data - Published in JOSS (2025)

AutoGAMESS 40% confidence

AutoGAMESS: A Python package for automation of GAMESS(US) Raman calculations - Published in JOSS (2019)

Kanapy 40% confidence

Kanapy: A Python package for generating complex synthetic polycrystalline microstructures - Published in JOSS (2019)

AutoUncertainties 40% confidence

AutoUncertainties: A Python Package for Uncertainty Propagation - Published in JOSS (2025)

movement_primitives 40% confidence

movement_primitives: Imitation Learning of Cartesian Motion with Movement Primitives - Published in JOSS (2024)

GSAreport 40% confidence

GSAreport: Easy to Use Global Sensitivity Reporting - Published in JOSS (2022)

tensorzero 40% confidence

TensorZero is an open-source stack for industrial-grade LLM applications. It unifies an LLM gateway, observability, optimization, evaluation, and experimentation.

FIRESONG 40% confidence

FIRESONG: A python package to simulate populations of extragalactic neutrino sources - Published in JOSS (2021)

CM++ - A Meta-method for Well-Connected Community Detection 40% confidence

CM++ - A Meta-method for Well-Connected Community Detection - Published in JOSS (2024)

SeqTools 40% confidence

SeqTools: A python package for easy transformation, combination and evaluation of large datasets. - Published in JOSS (2018)

maestro 40% confidence

streamline the fine-tuning process for multimodal models: PaliGemma 2, Florence-2, and Qwen2.5-VL

QuantNBody 40% confidence

QuantNBody: a Python package for quantum chemistry and physics to build and manipulate many-body operators and wave functions. - Published in JOSS (2022)

lattice_mc 40% confidence

lattice_mc: A Python Lattice-Gas Monte Carlo Module - Published in JOSS (2017)

CRATE 40% confidence

CRATE: A Python package to perform fast material simulations - Published in JOSS (2023)

TraViA 40% confidence

TraViA: a Traffic data Visualization and Annotation tool in Python - Published in JOSS (2021)

Underworld2 40% confidence

Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud - Published in JOSS (2020)

Multiphonon 40% confidence

Multiphonon: Phonon Density of States tools for Inelastic Neutron Scattering Powder Data - Published in JOSS (2018)

GXBeam 40% confidence

GXBeam: A Pure Julia Implementation of Geometrically Exact Beam Theory - Published in JOSS (2022)

BayesReconPy 39% confidence

BayesReconPy: A Python package for forecast reconciliation - Published in JOSS (2025)

Pyrgg 39% confidence

Pyrgg: Python Random Graph Generator - Published in JOSS (2017)

OTTO 39% confidence

OTTO: A Python package to simulate, solve and visualize the source-tracking POMDP - Published in JOSS (2022)

elmada 39% confidence

elmada: Dynamic electricity carbon emission factors and prices for Europe - Published in JOSS (2021)

pybop 39% confidence

A parameterisation and optimisation package for battery models.

microeye 38% confidence

A python toolkit for fluorescence microscopy.

gensim 38% confidence

Topic Modelling for Humans

sweater 38% confidence

sweater: Speedy Word Embedding Association Test and Extras Using R - Published in JOSS (2022)

NiaARM 38% confidence

NiaARM: A minimalistic framework for Numerical Association Rule Mining - Published in JOSS (2022)

ODES 37% confidence

ODES: a high level interface to ODE and DAE solvers - Published in JOSS (2018)

Ambit – A FEniCS-based cardiovascular multi-physics solver 37% confidence

Ambit – A FEniCS-based cardiovascular multi-physics solver - Published in JOSS (2024)

flory 37% confidence

flory: A Python package for finding coexisting phases in multicomponent mixtures - Published in JOSS (2025)