GitHub / bactopia 6 projects

Bactopia

Nextflow DSL2 pipeline for the complete analysis of bacterial genomes

https://bactopia.github.io/

Projects

Updated 9 months ago

https://github.com/bactopia/bactopia-py • Rank 11.1 • Science 49%

A Python package for working with Bactopia

Updated 9 months ago

bactopia • Science 67%

A flexible pipeline for complete analysis of bacterial genomes

bacterial-genomes bioconda conda fastqs nextflow

Updated 9 months ago

bactopia-assembler • Science 44%

The assembly process used by Bactopia.

Updated 9 months ago

bactopia-variants • Science 44%

The SNP and InDel process used by Bactopia

Updated 9 months ago

bactopia-sketcher • Science 44%

Methods used by Bactopia for minmer sketching

Updated 9 months ago

bactopia-teton • Science 44%

The taxonomic classification process used by Bactopia.