gtf-ops • Science 54%

Filtering GENCODE or ENSEMBLE annotation in GTF format. Annotating missing regions in iCount genomic segmentation.

peka-eclip • Science 44%

Download and prepare ENCODE eCLIP raw fastq for processing with the nf-core/clipseq pipeline

bs_assign • Science 54%

Find groups of motifs around genomic landmarks of interest

cv_coverage • Science 54%

cluster_kmers • Science 54%

Get clusters of k-mers based solely on their sequence or in combination with enrichment in PEKA.

peka • Science 49%

Find motifs enriched around prominent crosslinks