GitHub
imsep
Repo for an "Introduction to Professional Software Development for Researchers" course using the Carpentries Workbench platform
https://github.com/hauselin/depletion_bayes
Repository for paper (Strong effort manipulations reduce response caution)
FractalDimensions
Estimating the fractal dimension of timeseries or multidimensional datasets; also dynamical indicators via extreme value theory
python-workflow-definition
Python Workflow Definition - workflow interoperability for aiida, jobflow and pyiron
nf-core-checkatlas
One liner tool to check the quality of your single-cell atlases.
sep_tools
Python tools provided by the SOLER project for the analysis of Solar Energetic Particles
rnaseq_pipeline
RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
sixarm_debian_gimp_packages
SixArm.com » Debian » GIMP Gnu Image Manipulation Program packages
p3d-dfs
Set of parallel Branch-and-Bound skeletons in Chapel targeting CPU-based systems at every scale.
fathertimesdkp-
Donald Paul Smith – “Father Time” Founder of the SDKP Framework | Originator of Unified Scientific Principles Donald Smith is the creator of the Scale–Density–Kinematic Principle (SDKP), the Earth Orbit Speed System (EOS), the SD and N Principle (Shape–Dimension–Number), and the Quantum Code of Creation (QCC)—
dappa-clospo-maze-planning
This repository presents a post-processing framework combining the Direction-Aware Path Planning Approach (DAPPA) and Constrained Line-of-Sight Path Optimization (CLOSPO).
stats-array-nanrange-by
Calculate the range of an array via a callback function, ignoring NaN values.
jump-start-book
First draft of a book: Jump Start Statistics, The First Three Steps You Should Take to Restart a Stalled Project
qiskit-addon-aqc-tensor
Reduce circuit depth by compressing initial layers via approximate quantum compilation with tensor networks (AQC-Tensor)
fl4health
A flexible, modular, and easy to use library to facilitate federated learning research and development in healthcare settings
universalpython
Write Python in any human language. UniversalPython is a transpiler which makes it possible to write Python code in different human languages like Urdu, German, Czech, and more. The code is translated to Python.
https://github.com/aloncrack7/data-degradation-detector
Library to make stimations on data degradation
figuregenerator
This helps creating high quality figures for use in manuscripts and presentations.
math-base-special-acotdf
Compute the arccotangent (in degrees) of a single-precision floating-point number.
https://github.com/ambco-iscte/jask
A Library for Generating Questions about Learners' Code in Java
https://github.com/annahedstroem/sanity-checks-revisited
[NeurIPS XAIA & Springer] Code and notebooks to paper "A Fresh Look at Sanity Checks for Saliency Maps"
https://github.com/anon0411/decoh_as_codom
Feedback-guided quantum circuits exploring codomain-zero as a structural condition. 구조 형성의 조건으로서 공역 0을 실험하는 피드백 기반 양자 회로.
https://github.com/aria-systems-group/regret_synthesis_toolbox
Source code for Regret synthesis for two-player turn-based game played on graphs - ICRA 22
https://github.com/arkokupski-wat/modified-spacetime-hypothesis
The hypothesis treats spacetime not as a passive backdrop for matter, but as an equal partner in physical transformations. The inspiration stems from explosive chemistry—specifically, how the detonation of high-energy materials mixtures) converts condensed matter into expanding gases and energy.
https://github.com/arkokupski-wat/g1g2-gravity-duality
🌌 G₁/G₂ Gravity Duality: Proves quantum & cosmic gravity are distinct phenomena.
https://github.com/arkokupski-wat/hypothesis-of-spontaneous-matter-antimatter-conversion
Hypothesis of Spontaneous Matter→Antimatter Conversion at Planck Densities
https://github.com/arkokupski-wat/subjective_time_as_emergent_information_processing
The Brain's Clock: From the Phoenix Equation to Holographic Consciousness
FastTanhSinhQuadrature.jl: High-performance Tanh-Sinh numerical integration in Julia
FastTanhSinhQuadrature.jl: High-performance Tanh-Sinh numerical integration in Julia - Published in JOSS (2026)
https://github.com/chen-yang-liu/awesome-change-captioning
🔥Collection of resources and papers
bacpaq
Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data
sprfittingpaper2023.jl
Library for estimating biophysical properties of antibody-antigen interactions via a spatial, particle model.
https://github.com/chen-yang-liu/git-rsclip
Git-RSCLIP pre-trained on 10 million Remote sensing image-text pairs
https://github.com/assert-kth/vrepair
open science repo of "Neural Transfer Learning for Repairing Security Vulnerabilities in C Code" https://arxiv.org/pdf/2104.08308
https://github.com/astrazeneca/topmodel
Uses simulated time-to-event data to model efficacy by prevalence-adjusted nAb titres using a time-varying Cox model.
wangbuzsaki1996
Model from: Wang XJ, Buzsaki G (1996) Gamma oscillation by synaptic inhibition in a hippocampal interneuronal network model.
https://github.com/auroradysis/kerrp2p
KerrP2P is a software designed for forward ray tracing in Kerr spacetime. It is specifically tailored to efficiently calculate multiple null geodesics between designated "source" and "observer" points, locate apparent positions of the corresponding images, and quantify their shapes.
https://github.com/awesomecosmos/aayushi-verma-cv
Aayushi Verma's Curriculum Vitae.
https://github.com/baltic-coastal-monitoring-team/geopoint
GeoPOINT – Synthetic Point Generator for Geospatial Applications
https://github.com/bblodfon/pdac-efs-bench2024
Feature Selection benchmark and analysis on multi-omics PDAC datasets
https://github.com/benny0323/deep-learning-based-mia-tasks
⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!
https://github.com/berenslab/llm-excess-vocab
Delving into LLM-assisted writing in biomedical publications through excess vocabulary
iwac-sentiment-analysis
Interactive visualization of sentiment analysis on the Islam West Africa Collection (IWAC) corpus, comparing ChatGPT vs Gemini with multilingual support and advanced filtering.
https://github.com/bin-cao/shapev
[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values
https://github.com/bio-rsg/oceancolour
Package of custom functions for remote sensing data analysis
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
https://github.com/biodataanalysisgroup/virtual-tutorial-perturbation-modelling
https://github.com/bioinfomachinelearning/multicom4
The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia
https://github.com/biolink/resource-ingest-guide-schema
A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.
aobqm-adaptive-offset-based-quantization-method-
Adaptive-Offset-Based-Quantization-Method
https://github.com/bioscan-ml/barcodebert
A pre-trained representation from a transformers model for inference on insect DNA barcoding data.
nf-core-quantifyprotein
Label free quantification of proteins in samples(s) obtained using LC-MS-MS-.. timsTOF-pro instrument
https://github.com/bodenmillergroup/imcdataanalysis
R based workflow for multiplexed imaging data
https://github.com/boothgroup/vayesta
A Python package for wave function-based quantum embedding
https://github.com/bootphon/speech-map
Mean Average Precision over words or n-grams with speech features
