GitHub
https://github.com/aria-systems-group/pddltosim
Source code for abstraction construction from PDDL, strategy synthesis, and visualization using Pybullet
https://github.com/dmetivie/randomizedquasimontecarlo.jl
Some randomization methods for Randomized Quasi Monte Carlo e.g. scrambling, shift
https://github.com/arkokupski-wat/bn-field-hypothesis
Hypothesis about gravity-induced BN fields (just for fun) #AlternativePhysics #DarkMatter #QuantumTorsion
csci-4511w-final
My final project for CSCI 4511W at the University of Minnesota
https://github.com/astrazeneca/diffabxl
The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".
idf-external-hw-drivers
An assortment of drivers compatible with ESP IDF developed, tried, and qualified as working
run-cff-validator
Add a citation file to this repo and run the cff-validator GitHub Action
https://github.com/b-cubed-eu/dissmapr
Workflow for Compositional Dissimilarity and Biodiversity Turnover Analysis
https://github.com/barahona-research-group/severability
Code for the severability component quality function
pat_qgis_plugin
PAT is a QGIS plugin containing a collection of tools for processing precision agriculture data.
xsrecency
Package for incidence estimation via recency assays with single time-point cross-sectional data collection
cellsamsegmentation-pluripotent-differentiation
Perform CellSAM segmentation interactively
https://github.com/benjaminwehnert1008/deepmutscan
nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.
graphfragments.jl
Implementation of Graph Fragmentation in serial and in parallel.
https://github.com/bgeedb/bgee_pipeline
Source code of the Bgee pipeline used to build the Bgee database
array_wah
MATLAB tool for evaluating microphone array configurations via 3D localisation metrics. Generates error heatmaps and statistical insights to guide array design in acoustic research.
pyloric-network-simulator
Pure-Python, JAX-accelerate implementation of the pyloric circuit model described by Prinz et al (Nat. Neurosci., 2004)
https://github.com/dmetivie/periodichiddenmarkovmodels.jl
Non-homogenous Hidden Markov Models
pyrit
The Python Risk Identification Tool for generative AI (PyRIT) is an open source framework built to empower security professionals and engineers to proactively identify risks in generative AI systems.
avtandil-programming-language
Esoteric programming language adopted to Digital Humanities tasks. Python implementation. 🤖
https://github.com/brainlesion/preprocessing
preprocessing tools for multi-modal 3D brain imaging
https://github.com/dmetivie/pluto_export
Static export of my pluto notebooks and where I store other materials
https://github.com/broadinstitute/seqc_multiqc
Fork of MultiQC from July 2018 for seQuoia bacterial genomics infrastructure.
https://github.com/byuignite/hips
Hierarchical Parcel Swapping turbulence mixing model
https://github.com/caltechlibrary/2020-cpa-shell-git
Workshop website for January 2020 CPA Shell and Git Classes
full-stack-project-acolhe-queer-application
This Full Stack project was developed by my classmates and me as the semester conclusion project at the Puc Minas University. It was developed with C#, HTML, CSS, Java Script and Bootstrap.
control-neuralode
Neural ODEs as Feedback Policies for Nonlinear Optimal Control (IFAC 2023) https://doi.org/10.1016/j.ifacol.2023.10.1248
datafest-quarto
Workshop materials for learning how to build websites with Quarto
https://github.com/camilogarciabotero/bioatomscount.jl
Count organic atoms in a BioSequence
exaca
Mirror for ExaCA https://github.com/LLNL/ExaCA: cellular automata for alloy nucleation and solidification written with Kokkos
tgt_realtime
Code for real-time processing of shipboard instruments on the R/V Thomas G. Thompson.
https://github.com/dmetivie/abcmethods.jl
A Julia package implementing some Bayesian ABC methods
visualizations_in_r
Introductory lesson on Visualizations in R, built with Carpentries Workbench infracture
https://github.com/choderalab/broad-spectrum-asap-paper
Scripts and input files for structure-based prediction of affinity across the coronavirus family.
https://github.com/dmetivie/lux.jl
Elegant & Performant Scientific Machine Learning in Julia
computing-basics-batch
A tutorial on batch job submission and monitoring for DUNE computing.
https://github.com/dmetivie/hiddenmarkovmodels.jl
A Julia package for simulation, inference and learning of Hidden Markov Models.
