https://github.com/alejandrogzi/postoga - v0.9.1-devel

What's new on version 0.9.1-devel

• Change makequerytable to a broader approach, mapping missing data (note that orthology scores from joined fragments are still as NaNs).

- Python
Published by alejandrogzi almost 2 years ago

https://github.com/alejandrogzi/postoga - v0.9.0-devel

What's new on version 0.9.0-devel

• Adds --outdir to control where postoga output goes.
• Adds --isoforms to allow the user specify external isoform tables.
• Disables git features from logger.py [branch/commit] info.
• Changes a small portion of filterqueryannotation.py && makequerytable.py to fix the --paralog flag and allow a broader inclusion of isoforms.

- Python
Published by alejandrogzi almost 2 years ago

https://github.com/alejandrogzi/postoga - v0.8.0-devel

Adds --paralog, a new argument to preserve transcripts with paralog projections probabilities less or equal to a given threshold. Implements --skip to only use postoga as a filtering tool, skipping additional post-processing steps. Adds bed as an option to --to to avoid the conversion to gtf/gff. Modifies logger.py to send logging information to stdout (this is also written to postoga.log)

- Python
Published by alejandrogzi about 2 years ago