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Open Source Science

https://github.com/alejandrogzi/isotools

tools for long-read transcriptomics

https://github.com/alejandrogzi/isotools

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

tools for long-read transcriptomics

Basic Info
  • Host: GitHub
  • Owner: alejandrogzi
  • License: apache-2.0
  • Language: Rust
  • Default Branch: main
  • Homepage:
  • Size: 23.2 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed 10 months ago
Metadata Files
Readme License

Owner

  • Name: Alejandro Gonzales-Irribarren
  • Login: alejandrogzi
  • Kind: user

GitHub Events

Total
  • Push event: 1
  • Public event: 1
Last Year
  • Push event: 1
  • Public event: 1

Dependencies

isotools/Cargo.lock cargo
  • 266 dependencies
isotools/Cargo.toml cargo
isotools/config/Cargo.lock cargo
  • cfg-if 1.0.0
  • console 0.15.8
  • encode_unicode 0.3.6
  • indicatif 0.17.8
  • instant 0.1.13
  • lazy_static 1.5.0
  • libc 0.2.161
  • number_prefix 0.4.0
  • portable-atomic 1.9.0
  • unicode-width 0.1.14
  • windows-sys 0.52.0
  • windows-targets 0.52.6
  • windows_aarch64_gnullvm 0.52.6
  • windows_aarch64_msvc 0.52.6
  • windows_i686_gnu 0.52.6
  • windows_i686_gnullvm 0.52.6
  • windows_i686_msvc 0.52.6
  • windows_x86_64_gnu 0.52.6
  • windows_x86_64_gnullvm 0.52.6
  • windows_x86_64_msvc 0.52.6
isotools/config/Cargo.toml cargo
isotools/entry/Cargo.toml cargo
isotools/iso-classify/Cargo.toml cargo
isotools/iso-fusion/Cargo.toml cargo
isotools/iso-intron/Cargo.lock cargo
  • ahash 0.8.11
  • allocator-api2 0.2.18
  • anstream 0.6.15
  • anstyle 1.0.8
  • anstyle-parse 0.2.5
  • anstyle-query 1.1.1
  • anstyle-wincon 3.0.4
  • anyhow 1.0.91
  • autocfg 1.4.0
  • bitflags 2.6.0
  • byteorder 1.5.0
  • cfg-if 1.0.0
  • clap 4.5.20
  • clap_builder 4.5.20
  • clap_derive 4.5.18
  • clap_lex 0.7.2
  • colorchoice 1.0.2
  • colored 2.1.0
  • console 0.15.8
  • crossbeam-deque 0.8.5
  • crossbeam-epoch 0.9.18
  • crossbeam-utils 0.8.20
  • dashmap 5.5.3
  • deranged 0.3.11
  • either 1.13.0
  • encode_unicode 0.3.6
  • getrandom 0.2.15
  • hashbrown 0.14.5
  • heck 0.5.0
  • hermit-abi 0.3.9
  • indicatif 0.17.8
  • instant 0.1.13
  • is_terminal_polyfill 1.70.1
  • itoa 1.0.11
  • lazy_static 1.5.0
  • libc 0.2.161
  • lock_api 0.4.12
  • log 0.4.22
  • num-conv 0.1.0
  • num-traits 0.2.19
  • num_cpus 1.16.0
  • num_threads 0.1.7
  • number_prefix 0.4.0
  • once_cell 1.20.2
  • parking_lot_core 0.9.10
  • paste 1.0.15
  • portable-atomic 1.9.0
  • powerfmt 0.2.0
  • ppv-lite86 0.2.20
  • proc-macro2 1.0.89
  • quote 1.0.37
  • rand 0.8.5
  • rand_chacha 0.3.1
  • rand_core 0.6.4
  • rayon 1.10.0
  • rayon-core 1.12.1
  • redox_syscall 0.5.7
  • rmp 0.8.14
  • rmp-serde 1.3.0
  • scopeguard 1.2.0
  • serde 1.0.213
  • serde_derive 1.0.213
  • simple_logger 4.3.3
  • smallvec 1.13.2
  • strsim 0.11.1
  • syn 2.0.85
  • thiserror 1.0.65
  • thiserror-impl 1.0.65
  • time 0.3.36
  • time-core 0.1.2
  • time-macros 0.2.18
  • unicode-ident 1.0.13
  • unicode-width 0.1.14
  • utf8parse 0.2.2
  • version_check 0.9.5
  • wasi 0.11.0+wasi-snapshot-preview1
  • windows-sys 0.48.0
  • windows-sys 0.52.0
  • windows-targets 0.48.5
  • windows-targets 0.52.6
  • windows_aarch64_gnullvm 0.48.5
  • windows_aarch64_gnullvm 0.52.6
  • windows_aarch64_msvc 0.48.5
  • windows_aarch64_msvc 0.52.6
  • windows_i686_gnu 0.48.5
  • windows_i686_gnu 0.52.6
  • windows_i686_gnullvm 0.52.6
  • windows_i686_msvc 0.48.5
  • windows_i686_msvc 0.52.6
  • windows_x86_64_gnu 0.48.5
  • windows_x86_64_gnu 0.52.6
  • windows_x86_64_gnullvm 0.48.5
  • windows_x86_64_gnullvm 0.52.6
  • windows_x86_64_msvc 0.48.5
  • windows_x86_64_msvc 0.52.6
  • zerocopy 0.7.35
  • zerocopy-derive 0.7.35
isotools/iso-intron/Cargo.toml cargo
isotools/iso-nmd/Cargo.toml cargo
isotools/iso-pack/Cargo.lock cargo
  • ahash 0.8.11
  • allocator-api2 0.2.18
  • anstream 0.6.15
  • anstyle 1.0.8
  • anstyle-parse 0.2.5
  • anstyle-query 1.1.1
  • anstyle-wincon 3.0.4
  • anyhow 1.0.89
  • autocfg 1.4.0
  • bitflags 2.6.0
  • byteorder 1.5.0
  • cfg-if 1.0.0
  • clap 4.5.18
  • clap_builder 4.5.18
  • clap_derive 4.5.18
  • clap_lex 0.7.2
  • colorchoice 1.0.2
  • crossbeam-deque 0.8.5
  • crossbeam-epoch 0.9.18
  • crossbeam-utils 0.8.20
  • dashmap 5.5.3
  • either 1.13.0
  • getrandom 0.2.15
  • hashbrown 0.14.5
  • heck 0.5.0
  • hermit-abi 0.3.9
  • is_terminal_polyfill 1.70.1
  • libc 0.2.159
  • lock_api 0.4.12
  • num-traits 0.2.19
  • num_cpus 1.16.0
  • once_cell 1.20.1
  • parking_lot_core 0.9.10
  • paste 1.0.15
  • portable-atomic 1.9.0
  • ppv-lite86 0.2.20
  • proc-macro2 1.0.86
  • quote 1.0.37
  • rand 0.8.5
  • rand_chacha 0.3.1
  • rand_core 0.6.4
  • rayon 1.10.0
  • rayon-core 1.12.1
  • redox_syscall 0.5.7
  • rmp 0.8.14
  • rmp-serde 1.3.0
  • scopeguard 1.2.0
  • serde 1.0.210
  • serde_derive 1.0.210
  • smallvec 1.13.2
  • strsim 0.11.1
  • syn 2.0.79
  • unicode-ident 1.0.13
  • utf8parse 0.2.2
  • version_check 0.9.5
  • wasi 0.11.0+wasi-snapshot-preview1
  • windows-sys 0.52.0
  • windows-targets 0.52.6
  • windows_aarch64_gnullvm 0.52.6
  • windows_aarch64_msvc 0.52.6
  • windows_i686_gnu 0.52.6
  • windows_i686_gnullvm 0.52.6
  • windows_i686_msvc 0.52.6
  • windows_x86_64_gnu 0.52.6
  • windows_x86_64_gnullvm 0.52.6
  • windows_x86_64_msvc 0.52.6
  • zerocopy 0.7.35
  • zerocopy-derive 0.7.35
isotools/iso-pack/Cargo.toml cargo
isotools/iso-polya/Cargo.toml cargo
isotools/iso-split/Cargo.toml cargo
isotools/iso-utr/Cargo.lock cargo
  • ahash 0.8.11
  • allocator-api2 0.2.18
  • anstream 0.6.15
  • anstyle 1.0.8
  • anstyle-parse 0.2.5
  • anstyle-query 1.1.1
  • anstyle-wincon 3.0.4
  • anyhow 1.0.91
  • autocfg 1.4.0
  • bitflags 2.6.0
  • byteorder 1.5.0
  • cfg-if 1.0.0
  • clap 4.5.20
  • clap_builder 4.5.20
  • clap_derive 4.5.18
  • clap_lex 0.7.2
  • colorchoice 1.0.2
  • console 0.15.8
  • crossbeam-deque 0.8.5
  • crossbeam-epoch 0.9.18
  • crossbeam-utils 0.8.20
  • dashmap 5.5.3
  • either 1.13.0
  • encode_unicode 0.3.6
  • getrandom 0.2.15
  • hashbrown 0.14.5
  • heck 0.5.0
  • hermit-abi 0.3.9
  • indicatif 0.17.8
  • instant 0.1.13
  • is_terminal_polyfill 1.70.1
  • lazy_static 1.5.0
  • libc 0.2.161
  • lock_api 0.4.12
  • log 0.4.22
  • num-traits 0.2.19
  • num_cpus 1.16.0
  • number_prefix 0.4.0
  • once_cell 1.20.2
  • parking_lot_core 0.9.10
  • paste 1.0.15
  • portable-atomic 1.9.0
  • ppv-lite86 0.2.20
  • proc-macro2 1.0.89
  • quote 1.0.37
  • rand 0.8.5
  • rand_chacha 0.3.1
  • rand_core 0.6.4
  • rayon 1.10.0
  • rayon-core 1.12.1
  • redox_syscall 0.5.7
  • rmp 0.8.14
  • rmp-serde 1.3.0
  • scopeguard 1.2.0
  • serde 1.0.213
  • serde_derive 1.0.213
  • smallvec 1.13.2
  • strsim 0.11.1
  • syn 2.0.85
  • unicode-ident 1.0.13
  • unicode-width 0.1.14
  • utf8parse 0.2.2
  • version_check 0.9.5
  • wasi 0.11.0+wasi-snapshot-preview1
  • windows-sys 0.52.0
  • windows-targets 0.52.6
  • windows_aarch64_gnullvm 0.52.6
  • windows_aarch64_msvc 0.52.6
  • windows_i686_gnu 0.52.6
  • windows_i686_gnullvm 0.52.6
  • windows_i686_msvc 0.52.6
  • windows_x86_64_gnu 0.52.6
  • windows_x86_64_gnullvm 0.52.6
  • windows_x86_64_msvc 0.52.6
  • zerocopy 0.7.35
  • zerocopy-derive 0.7.35
isotools/iso-utr/Cargo.toml cargo
pyproject.toml pypi
  • keras >= 2.2.4
  • numpy >= 1.16.2
  • scipy >= 1.2.1
  • tensorflow >= 1.13.1