Recent Releases of https://github.com/alexandrovlab/sigprofilerextractorr
https://github.com/alexandrovlab/sigprofilerextractorr - v1.1.16
- Resolve input handling issues with bedpe and seg files.
- Sync export_probabilities parameter with new SPA version.
- Remove decomposition plots from SPE. Expand Travis tests.
- R
Published by marcos-diazg about 3 years ago
https://github.com/alexandrovlab/sigprofilerextractorr - v1.1.13
- Remove old assignment parameter.
- Fix exception seeds path.
- Fix issue decomposition plots.
- Add allowstabilitydrop parameter.
- Add support for CNV and SV.
- Reset reference genome to GRCh37 if a not supported genome is selected.
- Add support for COSMIC exome reference signatures.
- Fix typos, requirements, and remove legacy decomposition code.
- Add SigProfilerAssignment version to Job_Metadata file.
- Update "opportunity_genome" parameter passed to SigProfilerAssignment.
- Integrate SigProfilerAssignment for decomposition and subsequent attribution of de novo signatures.
- Update normalization, selection and default NMF replicates.
- R
Published by marcos-diazg over 3 years ago