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https://github.com/alexriss/sars-cov-2-analysis

Coronavirus visualization: relative daily changes, case fatality rates, etc.

https://github.com/alexriss/sars-cov-2-analysis

Science Score: 13.0%

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coronavirus descriptive-statistics sars-cov-2 visualization
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Coronavirus visualization: relative daily changes, case fatality rates, etc.

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coronavirus descriptive-statistics sars-cov-2 visualization
Created about 6 years ago · Last pushed over 4 years ago
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Readme Funding License

README.md

SARS-CoV-2 Analysis

License: GPL v3

Description

A quick analysis of coronavirus figures, in particular relative increases in confirmed changes, trendlines, as well as relative CFR ratios (very crudly approximated by a simple division of confirmed cases by deceased cases).

Why another one?

We need relative numbers! All countries have different testing capacities and often also different rules as what counts as confirmed case or coronavirus-related fatality. Thus, relative ration and relative increases in numbers can be more informative.

I haven't seen calculations and simple visualizations of relative numbers. That is why I did this quick weekend project. This is my first vue.js project, so it might not be done completely optimally.

OK, I am convinced, let me see it!

Sure, no problem. Here you go: Live version

Obligatory screenshots

Table view giving numbers, relative numbers, reproduction numbers and sparklines: screenshot of overview

Detailed view for each country: screenshot of detail view

Is it beta?

Of course! Even rather alpha. It is a weekend project and I just work on this in my free time. Please double check all numbers and graphs.

Data source

The data is from the COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University and Johns Hopkins University vaccine data and UNdata. For the calculation of the reproduction source I followed the method of AGES Austria, which is similar to the method presented in the R-Package EpiEstim and described in Am J Epidemiol 178, 1505–1512 (2013).

Todo

  • parse US states
  • improve mobile experience
  • probably: use ECharts for sparklines (instead of charts.js)
  • improve tooltip position for sparklines, probably static position will be best
  • calculate the CFR based on confirmed cases n days ago (controlled via slider)
  • save settings locally (vue.js localStorage)

Owner

  • Name: Alex Riss
  • Login: alexriss
  • Kind: user
  • Location: Munich, Germany
  • Company: Technical University of Munich

Scientist (Physics, Chemistry, Scanning Probe Microscopy), Data, Visualization, Health/Fitness/Bio, Photography

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package.json npm
  • @babel/eslint-parser ^7.5.4 development
  • @vue/cli-plugin-babel ^5.0.0-rc.1 development
  • @vue/cli-plugin-eslint ~v5.0.0-rc.1 development
  • @vue/cli-service ^4.5.15 development
  • eslint ^8.6.0 development
  • eslint-plugin-vue ^8.2.0 development
  • gh-pages ^3.2.3 development
  • node-sass ^6.0.1 development
  • sass ^1.45.2 development
  • sass-loader ^10.1.1 development
  • vue-template-compiler ^2.6.14 development
  • webpack ^4.45.0 development
  • @vue/composition-api ^1.4.3
  • buefy ^0.8.20
  • chart.js ^2.9.4
  • core-js ^3.20.2
  • echarts ^4.9.0
  • laue ^0.2.1
  • nth-check ^2.0.1
  • ssri ^8.0.1
  • svgo ^2.8.0
  • update ^0.7.4
  • vue ^2.6.14
  • vue-chartjs ^3.5.1
  • vue-echarts ^5.0.0-beta.0
  • vue-numeral-filter ^2.2.0