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https://github.com/alexslemonade/scpca-portal

Single-cell Pediatric Cancer Atlas Portal is a growing database of uniformly processed single-cell data from pediatric cancer tumors and model systems

https://github.com/alexslemonade/scpca-portal

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.6%) to scientific vocabulary

Keywords

bioinformatics single-cell
Last synced: 5 months ago · JSON representation

Repository

Single-cell Pediatric Cancer Atlas Portal is a growing database of uniformly processed single-cell data from pediatric cancer tumors and model systems

Basic Info
Statistics
  • Stars: 4
  • Watchers: 3
  • Forks: 0
  • Open Issues: 81
  • Releases: 0
Topics
bioinformatics single-cell
Created over 4 years ago · Last pushed 6 months ago
Metadata Files
Readme Funding License Codeowners

README.md

ScPCA Portal

The ScPCA Portal exposes the processed data from Alex's Lemonade Stand Foundation's Single-cell Pediatric Cancer Atlas project.

The portal is hosted at https://scpca.alexslemonade.org/.

For information about interacting with the ScPCA Portal programmatically view the examples directory.

For more information on contributing and managing the portal, view the client README, the API README, or the infrastructure README.

Owner

  • Name: Alex's Lemonade Stand Foundation
  • Login: AlexsLemonade
  • Kind: organization

Childhood Cancer Data Lab of ALSF

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 373
  • Total pull requests: 508
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 6 days
  • Total issue authors: 10
  • Total pull request authors: 7
  • Average comments per issue: 0.54
  • Average comments per pull request: 0.41
  • Merged pull requests: 393
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 233
  • Pull requests: 282
  • Average time to close issues: 14 days
  • Average time to close pull requests: 4 days
  • Issue authors: 9
  • Pull request authors: 5
  • Average comments per issue: 0.24
  • Average comments per pull request: 0.35
  • Merged pull requests: 218
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • avrohomgottlieb (153)
  • nozomione (103)
  • davidsmejia (78)
  • dvenprasad (9)
  • arkid15r (8)
  • jashapiro (5)
  • jaclyn-taroni (5)
  • Jen-OMalley (5)
  • allyhawkins (4)
  • sjspielman (3)
Pull Request Authors
  • avrohomgottlieb (184)
  • davidsmejia (155)
  • nozomione (138)
  • arkid15r (20)
  • dvenprasad (4)
  • jaclyn-taroni (4)
  • allyhawkins (3)
Top Labels
Issue Labels
client / front-end (53) API (28) Low Priority (13) Epic (13) bug (10) Medium Priority (7) dev hand-off (4) loading data (2) High Priority (1) documentation (1) enhancement (1) future thoughts (1)
Pull Request Labels
client / front-end (43) API (26) bug (12) Low Priority (6) High Priority (1) enhancement (1)

Dependencies

.github/workflows/deploy_prod_backend.yml actions
  • 1password/load-secrets-action v1 composite
  • actions/checkout v2 composite
  • hashicorp/setup-terraform v1 composite
.github/workflows/deploy_staging_backend.yml actions
  • 1password/load-secrets-action v1 composite
  • actions/checkout v2 composite
  • hashicorp/setup-terraform v1 composite
.github/workflows/push.yml actions
  • actions/checkout v2 composite
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
  • actions/setup-python v2 composite
  • pre-commit/action v2.0.0 composite
  • wearerequired/lint-action v1 composite
docker-compose.yml docker
  • api latest
  • node 18.17.1
  • postgres 11.6
client/package.json npm
  • @babel/core ^7.15.0 development
  • @babel/eslint-parser ^7.15.0 development
  • @storybook/addon-actions ^7.4.1 development
  • @storybook/addon-essentials ^7.4.1 development
  • @storybook/addon-links ^7.4.1 development
  • @storybook/addon-storysource ^7.4.1 development
  • @storybook/react ^7.4.1 development
  • @storybook/react-webpack5 ^7.4.1 development
  • babel-loader ^8.2.2 development
  • babel-plugin-inline-react-svg ^2.0.1 development
  • babel-preset-airbnb ^5.0.0 development
  • babel-preset-next ^1.4.0 development
  • dotenv-webpack ^7.1.0 development
  • eslint-config-airbnb ^18.2.1 development
  • eslint-config-next ^13.4.19 development
  • eslint-config-prettier ^8.3.0 development
  • eslint-plugin-prettier ^3.4.0 development
  • eslint-plugin-storybook ^0.6.13 development
  • storybook ^7.4.1 development
  • @sentry/react ^6.11.0
  • eslint ^7.32.0
  • grommet ^2.17.5
  • grommet-icons ^4.6.2
  • isomorphic-unfetch ^3.1.0
  • match-sorter ^6.3.1
  • next ^13.4.19
  • raw-loader ^4.0.2
  • react ^18.2.0
  • react-dom ^18.2.0
  • react-ga4 ^1.4.1
  • react-table ^7.7.0
  • regenerator-runtime ^0.14.0
  • styled-components ^5.3.0
  • styled-reset ^4.3.4
  • yup ^0.32.9
client/yarn.lock npm
  • 1281 dependencies
api/requirements/base.txt pypi
  • awscli ==1.29.5
  • boto3 ==1.28.5
  • daiquiri ==1.5.0
  • dj-database-url ==0.5.0
  • django >=3.2,<4.0
  • django-configurations ==2.2
  • django-cors-headers ==3.2.1
  • django-extensions ==2.2.8
  • django-filter ==2.4.0
  • django-storages ==1.8.0
  • djangorestframework ==3.11.2
  • drf-extensions ==0.7.1
  • drf_yasg ==1.20.0
  • psycopg2-binary ==2.9.6
  • sentry-sdk ==0.18.0
api/requirements/local.txt pypi
  • black ==22.3.0
  • coverage ==5.0.3
  • factory-boy ==2.12.0
  • flake8 ==4.0.1
  • gunicorn ==20.0.4
  • ipdb ==0.12.3
  • ipython ==7.20
  • isort ==4.3.21
  • mock ==3.0.5
api/requirements/prod.txt pypi
  • uwsgi ==2.0.20
pyproject.toml pypi