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Open Source Science

https://github.com/algebraicjulia/petri.jl

A Petri net modeling framework for the Julia programming language

https://github.com/algebraicjulia/petri.jl

Science Score: 46.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    2 of 6 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.7%) to scientific vocabulary

Keywords from Contributors

relational-databases petri epidemiology chemistry algebra algebraic-structures category-theory relational relational-algebra pde
Last synced: 7 months ago · JSON representation

Repository

A Petri net modeling framework for the Julia programming language

Basic Info
  • Host: GitHub
  • Owner: AlgebraicJulia
  • License: mit
  • Language: Julia
  • Default Branch: main
  • Size: 68.7 MB
Statistics
  • Stars: 43
  • Watchers: 5
  • Forks: 4
  • Open Issues: 3
  • Releases: 22
Created over 6 years ago · Last pushed over 2 years ago
Metadata Files
Readme License

README.md

Petri.jl

Documentation Tests codecov DOI

Petri.jl is a Petri net modeling framework for the Julia programming language. Petri makes it easy to build complex reaction networks using a simple DSL. Once a model is defined, Petri.jl has support to generate ODE solutions and stochastic simulations using DifferentialEquations.jl. Examples and basic usage can be found in the documentation.

Goals

This is related to the DiffeqBiological Reaction DSL, but takes a different implementation approach. Instead of building our framework around symbolic algebra and standard chemical notion, we are working off the Applied Category Theory approach to reaction networks [Baez Pollard, 2017].

There are operations that are easy to do on the Petri.Model like "add a transition from R to S" that require simultaneously changing multiple parts of the algebraic formulation. Applied Category Theory gives a sound theoretical framework for manipulating Petri Nets as a model in terms of the given domain. Petri is a Julia package primarily intended to investigate how we can operationalize this theory into practical scientific software.

See AlgebraicPetri for tools that work with Petri net models and manipulating them with higher level APIs based on Applied Category Theory.

Owner

  • Name: AlgebraicJulia
  • Login: AlgebraicJulia
  • Kind: organization

GitHub Events

Total
  • Watch event: 4
Last Year
  • Watch event: 4

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 68
  • Total Committers: 6
  • Avg Commits per committer: 11.333
  • Development Distribution Score (DDS): 0.279
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Micah Halter m****r@g****u 49
Evan Patterson e****n@e****g 9
James j****s@g****u 7
github-actions[bot] 4****] 1
Andrew Baas b****s@g****m 1
AlgebraicJulia Bot 1****t 1
Committer Domains (Top 20 + Academic)
gtri.gatech.edu: 2 epatters.org: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 10
  • Total pull requests: 42
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 29 days
  • Total issue authors: 5
  • Total pull request authors: 6
  • Average comments per issue: 1.7
  • Average comments per pull request: 0.43
  • Merged pull requests: 37
  • Bot issues: 0
  • Bot pull requests: 3
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mehalter (5)
  • jpfairbanks (2)
  • ChrisRackauckas (1)
  • slwu89 (1)
  • JuliaTagBot (1)
Pull Request Authors
  • mehalter (27)
  • jpfairbanks (7)
  • github-actions[bot] (3)
  • algebraicjuliabot (3)
  • epatters (1)
  • bosonbaas (1)
Top Labels
Issue Labels
enhancement (3) bug (1) testing (1) documentation (1) clean up (1)
Pull Request Labels
enhancement (9) bug (4) documentation (2) testing (1) clean up (1)

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 2
  • Total dependent repositories: 5
  • Total versions: 22
juliahub.com: Petri

A Petri net modeling framework for the Julia programming language

  • Versions: 22
  • Dependent Packages: 2
  • Dependent Repositories: 5
Rankings
Dependent repos count: 4.6%
Average: 15.9%
Dependent packages count: 17.2%
Stargazers count: 17.9%
Forks count: 23.7%
Last synced: 8 months ago

Dependencies

.github/workflows/TagBot.yml actions
  • JuliaRegistries/TagBot v1 composite
.github/workflows/julia_ci.yml actions