PAS
PAS: a Python Anesthesia Simulator for drug control - Published in JOSS (2023)
Science Score: 95.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README and JOSS metadata -
✓Academic publication links
Links to: joss.theoj.org -
✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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✓JOSS paper metadata
Published in Journal of Open Source Software
Keywords
Repository
Simulate the effect of drugs during total intrevenous anesthesia
Basic Info
Statistics
- Stars: 8
- Watchers: 1
- Forks: 3
- Open Issues: 8
- Releases: 3
Topics
Metadata Files
README.md
PythonAnesthesiaSimulator
:rotatinglight: This repository is no more maintained, please refer to the version hosted here :rotatinglight:
The Python Anesthesia Simulator (PAS) models the effect of drugs on physiological variables during total intravenous anesthesia. It is particularly dedicated to the control community, to be used as a benchmark for the design of multidrug controllers. The available drugs are Propofol, Remifentanil, and Norepinephrine, the outputs are the Bispectral index (BIS), Mean Arterial Pressure (MAP), Cardiac Output (CO), and Tolerance of Laryngoscopy (TOL). PAS includes different well-known models along with their uncertainties to simulate inter-patient variability. Blood loss can also be simulated to assess the controller's performance in a shock scenario. Finally, PAS includes standard disturbance profiles and metrics computation to facilitate the evaluation of the controller's performances.
- Documentation and examples: https://python-anesthesia-simulator.readthedocs.io
- Associated paper: https://joss.theoj.org/papers/10.21105/joss.05480
Installation
Use pip to install the package:
python
pip install python-anesthesia-simulator
The package can be imported in your python script with:
python
import python_anesthesia_simulator as pas
Citation
To cite PAS in your work, cite this paper:
Aubouin-Pairault et al., (2023). PAS: a Python Anesthesia Simulator for drug control. Journal of Open Source Software, 8(88), 5480, https://doi.org/10.21105/joss.05480
Guidelines
- To report a bug or request a feature please open an issue.
- To contribute, you can fork the repository and ask for a pull request.
If you want to contact me for any reason, I'm available by mail.
Structure
.
├─── src
| ├─── python_anesthesia_simulator # Simulator library + metrics function
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├── paper # markdown paper for JOSS submition
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├── tests # files for testing the package
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├── docs # files for generating the docs
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├── LICENSE
├── pyproject.toml # packaging file
├── requirements.txt
├── README.md
└── .gitignore
License
GNU General Public License 3.0
Project status
Published in the journal of Open Source Software!
Author
Bob Aubouin--Paitault
Owner
- Name: Bob Aubouin--Pairault
- Login: BobAubouin
- Kind: user
- Location: Grenoble
- Company: Gipsa-lab
- Repositories: 2
- Profile: https://github.com/BobAubouin
PhD Student at Gipsa-Lab on the subject "Data-based anesthesia process modelling for online monitoring and prediction"
JOSS Publication
PAS: a Python Anesthesia Simulator for drug control
Authors
Univ. Grenoble Alpes, CNRS, Grenoble INP, GIPSA-lab, 38000 Grenoble, France, Univ. Grenoble Alpes, CNRS, Grenoble INP, VERIMAG, 38000 Grenoble, France
Univ. Grenoble Alpes, CNRS, Grenoble INP, GIPSA-lab, 38000 Grenoble, France
Univ. Grenoble Alpes, CNRS, Grenoble INP, VERIMAG, 38000 Grenoble, France
Editor
Antonia Mey
Tags
Anesthesia Drug Control Drug effect modelling Test pipelineGitHub Events
Total
- Issues event: 1
- Watch event: 3
- Push event: 9
- Fork event: 1
Last Year
- Issues event: 1
- Watch event: 3
- Push event: 9
- Fork event: 1
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Bob Aubouin | b****n@t****m | 89 |
| Bob Aubouin | b****t@u****r | 87 |
| Kevin Mattheus Moerman | K****n | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 24
- Total pull requests: 1
- Average time to close issues: 19 days
- Average time to close pull requests: 13 minutes
- Total issue authors: 3
- Total pull request authors: 1
- Average comments per issue: 0.75
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: 2 months
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- BobAubouin (21)
- JHartzer (1)
- sage3org (1)
Pull Request Authors
- Kevin-Mattheus-Moerman (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 35 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
- Total maintainers: 1
pypi.org: python-anesthesia-simulator
Anesthesia simulator: modellize the effect of drugs (Propofol, Remifentanil, Norepinephrine) during general anesthesia. Specially build for control design.
- Homepage: https://github.com/BobAubouin/Python_Anesthesia_Simulator
- Documentation: https://python-anesthesia-simulator.readthedocs.io/
- License: GNU General Public License v3 (GPLv3)
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Latest release: 1.0.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- bokeh ==3.2.0
- casadi ==3.6.3
- control ==0.9.4
- matplotlib ==3.7.1
- nbsphinx *
- numpy ==1.25.0
- numpydoc *
- pandas ==1.4.3
- pyswarm ==0.6
- sphinx_rtd_theme *
- casadi ==3.6.3
- control ==0.9.4
- matplotlib ==3.7.1
- numpy ==1.25.0
- pandas ==1.4.3
- casadi ==3.6.3
- control ==0.9.4
- matplotlib ==3.7.1
- numpy ==1.25.0
- pandas ==1.4.3