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https://github.com/alleninstitute/mindscope_utilities

Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program

https://github.com/alleninstitute/mindscope_utilities

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 7 committers (57.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: other
  • Language: Python
  • Default Branch: main
  • Size: 1.27 MB
Statistics
  • Stars: 2
  • Watchers: 5
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created about 5 years ago · Last pushed about 2 years ago
Metadata Files
Readme License

README.md

Deprecation warning:

mindscopeutilities is now a deprecated repo that will no longer be supported. It's functionality and many of it's individual functions have, and will continue to be moved over to the brainobservatoryutilities repo: https://github.com/AllenInstitute/brainobservatory_utilities

mindscope_utilities

Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program.

Functions in this repository depend on the AllenSDK https://github.com/AllenInstitute/AllenSDK

Installation

Set up a dedicated conda environment:

conda create -n mindscope_utilities python=3.8

Activate the new environment:

conda activate mindscope_utilities

Make the new environment visible in the Jupyter pip install ipykernel python -m ipykernel install --user --name mindscope_utilities

Install mindscopeutilities ``` pip install mindscopeutilities ```

Or if you intend to edit the source code, install in developer mode: git clone https://github.com/AllenInstitute/mindscope_utilities.git cd mindscope_utilities pip install -e .

Testing

Tests are run on CircleCI on every github commit.

Tests can be run locally by running the following at the command line: flake8 mindscope_utilities pytest

Level of Support

We are no longer supporting this repo. We are supporting the brainobservatoryutilities repo which provides much of the same functionality as this repo

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
Last Year

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 186
  • Total Committers: 7
  • Avg Commits per committer: 26.571
  • Development Distribution Score (DDS): 0.57
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Doug Ollerenshaw d****o@a****g 80
iryna.yavorska i****a@g****m 47
matchings m****g@a****g 34
Jinho Kim j****j@g****m 14
Clark R c****l@a****g 7
seanmcculloch s****h@a****g 3
Doug Ollerenshaw d****w@g****m 1
Committer Domains (Top 20 + Academic)
alleninstitute.org: 4

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 21
  • Total pull requests: 43
  • Average time to close issues: 9 months
  • Average time to close pull requests: 19 days
  • Total issue authors: 5
  • Total pull request authors: 6
  • Average comments per issue: 0.67
  • Average comments per pull request: 0.51
  • Merged pull requests: 38
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • matchings (8)
  • yavorska-iryna (6)
  • dougollerenshaw (4)
  • jkim0731 (2)
  • alexpiet (1)
Pull Request Authors
  • dougollerenshaw (17)
  • yavorska-iryna (11)
  • matchings (6)
  • jkim0731 (4)
  • seanmcculloch (3)
  • DowntonCrabby (2)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 251 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 15
  • Total maintainers: 3
pypi.org: mindscope-utilities

Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program

  • Versions: 9
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 88 Last month
Rankings
Dependent packages count: 7.4%
Dependent repos count: 22.3%
Forks count: 22.8%
Average: 24.0%
Stargazers count: 27.9%
Downloads: 39.5%
Maintainers (3)
dougollerenshaw matchings seanmcculloch
Last synced: 11 months ago
pypi.org: brain-observatory-utilities

Utilities for analyzing, manipulating and visualizing data for Brain Observatory projects

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 163 Last month
Rankings
Dependent packages count: 7.2%
Forks count: 23.0%
Average: 25.1%
Stargazers count: 28.1%
Dependent repos count: 42.2%
Maintainers (1)
matchings
Last synced: 10 months ago

Dependencies

setup.py pypi
  • allensdk *
  • flake8 *
  • pytest *