https://github.com/alleninstitute/render-python

A python interface for render

https://github.com/alleninstitute/render-python

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    4 of 11 committers (36.4%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (9.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A python interface for render

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: bsd-2-clause
  • Language: Python
  • Default Branch: master
  • Size: 5.56 MB
Statistics
  • Stars: 7
  • Watchers: 5
  • Forks: 11
  • Open Issues: 15
  • Releases: 5
Created over 9 years ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing License

README.rst

.. image:: https://readthedocs.org/projects/render-python/badge/
   :target: http://render-python.readthedocs.io/en/latest/
   :alt: Documentation Status 
.. image:: https://travis-ci.com/AllenInstitute/render-python.svg?branch=master
   :target: https://travis-ci.com/AllenInstitute/render-python
   :alt: Build Status
.. image:: https://codecov.io/gh/AllenInstitute/render-python/branch/master/graph/badge.svg
  :target: https://codecov.io/gh/AllenInstitute/render-python
  
render-python
#############

This is a python API client to interact with `render `_ and facilitate python scripting of `tilespec `_ creation

it presently interacts with render via a web-api, though the `client module `_ aims to interface by calling java client scripts to avoid server-side processing.

Render connection objects created with `renderapi.connect()` can default to environment variables.  Below is an example of the variables which can be sourced and added to, e.g.,  ~/.bashrc or ~/.bash_profile.
::

    export RENDER_HOST="localhost"
    export RENDER_PORT="8080"
    export RENDER_PROJECT="YOURPROJECT"
    export RENDER_OWNER="YOURNAME"
    export RENDER_CLIENT_SCRIPTS=".../render/render-ws-java-client/src/main/scripts"
    export RENDER_CLIENT_SCRIPT="$RENDER_CLIENT_SCRIPTS/run_ws_client.sh"
    export RENDER_CLIENT_HEAP="1G"


`Usage examples for a development Array Tomography workflow `_ are available.

Documentation 
#############
http://render-python.readthedocs.io/en/latest/

Government Sponsorship
######################
Supported by the Intelligence Advanced Research Projects Activity (IARPA) via Department of Interior / Interior Business Center (DoI/IBC) contract number D16PC00004. The U.S. Government is authorized to reproduce and distribute reprints for Governmental purposes notwithstanding any copyright annotation thereon. Disclaimer: The views and conclusions contained herein are those of the authors and should not be interpreted as necessarily representing the official policies or endorsements, either expressed or implied, of IARPA, DoI/IBC, or the U.S. Government.

.. _render :

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
  • Issues event: 2
  • Delete event: 2
  • Push event: 3
  • Pull request review comment event: 1
  • Pull request review event: 1
  • Pull request event: 7
  • Create event: 3
Last Year
  • Issues event: 2
  • Delete event: 2
  • Push event: 3
  • Pull request review comment event: 1
  • Pull request review event: 1
  • Pull request event: 7
  • Create event: 3

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 796
  • Total Committers: 11
  • Avg Commits per committer: 72.364
  • Development Distribution Score (DDS): 0.397
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
forrest collman f****n@g****m 480
RussTorres r****s@g****m 216
Dan Kapner d****k@.****g 69
Dan Kapner 3****r 16
Eric T. Trautman t****e 3
Martin Schorb m****b@e****e 3
Martin Schorb 3****b 2
Eric Perlman p****n 2
Sharmi s****a@g****m 2
miket m****t@a****g 2
thopp-tudelft t****r@t****l 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 35
  • Total pull requests: 80
  • Average time to close issues: 4 months
  • Average time to close pull requests: 8 days
  • Total issue authors: 6
  • Total pull request authors: 9
  • Average comments per issue: 1.37
  • Average comments per pull request: 1.7
  • Merged pull requests: 75
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 7
  • Average time to close issues: N/A
  • Average time to close pull requests: about 10 hours
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • RussTorres (18)
  • djkapner (9)
  • martinschorb (3)
  • lanery (2)
  • fcollman (2)
  • thopp-tudelft (1)
Pull Request Authors
  • RussTorres (30)
  • fcollman (20)
  • djkapner (20)
  • martinschorb (5)
  • trautmane (3)
  • sharmishtaa (2)
  • perlman (1)
  • miketaormina (1)
  • thopp-tudelft (1)
Top Labels
Issue Labels
enhancement (8) priority: low (6) bug (3) discussion (3) priority: high (3) tests (2) wontfix (2) docs (1)
Pull Request Labels

Dependencies

requirements.txt pypi
  • decorator *
  • numpy *
  • pillow *
  • requests *
  • scipy *
  • six *
  • sphinxcontrib-napoleon *
test_requirements.txt pypi
  • coverage >=4.1 test
  • flake8 >=3.0.4 test
  • jinja2 * test
  • mock >=2.0.0 test
  • pep8 >=1.7.0 test
  • pylint >=1.5.4 test
  • pytest >4.6,<5.0 test
  • pytest-cov >=2.2.1 test
  • pytest-pep8 >=1.0.6 test
  • pytest-xdist >=1.14 test
  • ujson * test
.github/workflows/release_publish.yml actions
  • actions/checkout v2 composite
  • pypa/gh-action-pypi-publish release/v1 composite
Dockerfile docker
  • fcollman/render-python-base latest build
docker-compose.yml docker
  • fcollman/render-ws latest
  • mongo 3.4.2
setup.py pypi