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Open Source Science

https://github.com/alleninstitute/swdb_behavioral_states

https://github.com/alleninstitute/swdb_behavioral_states

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
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    DOI references
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    Academic publication links
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    Committers with academic emails
    5 of 6 committers (83.3%) from academic institutions
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    Institutional organization owner
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (3.7%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: mit
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 22.1 MB
Statistics
  • Stars: 0
  • Watchers: 4
  • Forks: 6
  • Open Issues: 1
  • Releases: 0
Created about 3 years ago · Last pushed almost 3 years ago
Metadata Files
Readme License

README.md

SWDB_2023

SWDB_2023

This is the repository for the Behavior States tutorial for the 2023 Summer Workshop on the Dynamic Brain.

Brief topic outline:

Workshop 1: Explore Visual Behavioral Neuropixels dataset, manual estimation of behavioral states.

Workshop 2: Gaussian mixture model and hidden Markov model for state-space analysis on behavior data

List of keywords: behavioral state, mixture models, hidden Markov model, Visual Behavior Neuropixels

Support Policy

We are releasing this code as part of the 2023 Summer Workshop on the Dynamic Brain and will only be supporting and developing it for the context of this workshop. The community is welcome to submit issues, but you should not expect an active response outside of the context of the course.

Copyright 2023 Allen Institute

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

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Last synced: over 1 year ago

All Time
  • Total Commits: 63
  • Total Committers: 6
  • Avg Commits per committer: 10.5
  • Development Distribution Score (DDS): 0.254
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Matthew Storm Bull m****l@a****g 47
Shailaja Akella s****a@a****g 9
Michael Buice m****e@a****g 3
Saskia de Vries s****d@a****g 2
mabuice m****e@g****m 1
Shawn Olsen s****o@a****g 1
Committer Domains (Top 20 + Academic)
alleninstitute.org: 5

Issues and Pull Requests

Last synced: over 1 year ago

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  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
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  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
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Top Authors
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  • eywalker (1)
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Dependencies

environment/Dockerfile docker
  • registry.codeocean.allenneuraldynamics.org/codeocean/jupyterlab 3.4.4-miniconda4.12.0-python3.9-ubuntu20.04 build