https://github.com/alleninstitute/brain_observatory_utilities
A repository for analysis tools for data available from the AllenSDK
https://github.com/alleninstitute/brain_observatory_utilities
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 6 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Repository
A repository for analysis tools for data available from the AllenSDK
Basic Info
- Host: GitHub
- Owner: AllenInstitute
- License: other
- Language: Jupyter Notebook
- Default Branch: main
- Size: 1.67 MB
Statistics
- Stars: 4
- Watchers: 6
- Forks: 3
- Open Issues: 13
- Releases: 1
Metadata Files
README.md
brainobservatoryutilities
Tools for analysis, manipulation and visualization of Brain Observatory data availible via the AllenSDK.
Functions in this repository depend on the AllenSDK https://github.com/AllenInstitute/AllenSDK
Installation
Set up a dedicated conda environment:
conda create -n brain_observatory_utilities python=3.8
Activate the new environment:
conda activate brain_observatory_utilities
Make the new environment visible in the Jupyter
pip install ipykernel
python -m ipykernel install --user --name brain_observatory_utilities
Install brainobservatoryutilities
if you intend to edit the source code, install in developer mode:
git clone https://github.com/AllenInstitute/brain_observatory_utilities.git
cd brain_observatory_utilities
pip install -e .
Level of Support
We are planning on occasional updating these tools and repo structure with no fixed schedule. Community involvement is encouraged through both issues and pull requests.
Owner
- Name: Allen Institute
- Login: AllenInstitute
- Kind: organization
- Location: Seattle, WA
- Website: https://alleninstitute.org
- Repositories: 184
- Profile: https://github.com/AllenInstitute
Please visit http://alleninstitute.github.io/ for more information.
GitHub Events
Total
- Push event: 8
- Create event: 1
Last Year
- Push event: 8
- Create event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Marina | m****g@a****g | 31 |
| iryna.yavorska | i****a@g****m | 20 |
| Kate R | k****r@a****g | 19 |
| Forrest Collman | f****n@g****m | 3 |
| corbennett | c****t@g****m | 3 |
| mabuice | m****e@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 11
- Total pull requests: 11
- Average time to close issues: N/A
- Average time to close pull requests: 26 days
- Total issue authors: 3
- Total pull request authors: 5
- Average comments per issue: 0.27
- Average comments per pull request: 1.18
- Merged pull requests: 9
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: 7 days
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 2.5
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- matchings (7)
- DowntonCrabby (2)
- jkim0731 (1)
Pull Request Authors
- matchings (8)
- corbennett (2)
- DowntonCrabby (2)
- yavorska-iryna (1)
- mattjdavis (1)