https://github.com/alleninstitute/jem
Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.4%) to scientific vocabulary
Repository
Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
Basic Info
- Host: GitHub
- Owner: AllenInstitute
- License: other
- Language: HTML
- Default Branch: master
- Size: 963 KB
Statistics
- Stars: 4
- Watchers: 6
- Forks: 3
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
jem
This repository contains JEM (JSON Electrophysiology Metadata form), a web-form for logging metadata during Patch-Seq slice electrophysiology experiments. On production rigs at the Allen Institute JEM is partially populated throughout the experiment by interacting with a workflow sequencing engine. This workflow sequencing engine coordinates technical processes such as image collection and electrophysiology stimulus presentations, as well as communication with our LIMS database. For experimental consistency, off-production users conducting Patch-Seq experiments (both internally at the Institute, as well as externally) should manually enter metadata into JEM.
We are planning on occasionally updating this tool, but with no fixed schedule and with limited support. The community is welcome to submit issues, but you should not expect an active response.
This software was developed with support from the National Institute Of Mental Health of the National Institutes of Health and National Institute on Aging under Award Number U01MH114812. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.
Project Organization
├── CONTRIBUTING.md <- Describes the terms for making contributions
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├── LICENSE <- The fine print of this using/redistributing this project
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├── README.md <- The top-level README for developers using this project.
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├── jem-constants <- Useful reference data (user library, roi dictionary, etc.)
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├── jem-examples <- Examples of valid JEM data for different use cases.
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└── src <- Source code for use in this project.
Owner
- Name: Allen Institute
- Login: AllenInstitute
- Kind: organization
- Location: Seattle, WA
- Website: https://alleninstitute.org
- Repositories: 184
- Profile: https://github.com/AllenInstitute
Please visit http://alleninstitute.github.io/ for more information.
GitHub Events
Total
- Push event: 55
Last Year
- Push event: 55
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 0
- Total pull requests: 10
- Average time to close issues: N/A
- Average time to close pull requests: 25 days
- Total issue authors: 0
- Total pull request authors: 4
- Average comments per issue: 0
- Average comments per pull request: 0.6
- Merged pull requests: 8
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- rossfriedberg (5)
- bergjim (2)
- ru57y34nn (2)
- ramr24 (1)