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Open Source Science

https://github.com/alleninstitute/bigfeta

Big FeaTure Aligner: a scalable solution for feature alignment

https://github.com/alleninstitute/bigfeta

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    5 of 10 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Big FeaTure Aligner: a scalable solution for feature alignment

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • License: bsd-2-clause
  • Language: Python
  • Default Branch: main
  • Size: 10.5 MB
Statistics
  • Stars: 5
  • Watchers: 10
  • Forks: 2
  • Open Issues: 4
  • Releases: 3
Created almost 7 years ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing License

README.rst 

.. image:: https://travis-ci.org/AllenInstitute/bigfeta.svg?branch=master
   :target: https://travis-ci.org/AllenInstitute/bigfeta
   :alt: Build Status
.. image:: https://codecov.io/gh/AllenInstitute/bigfeta/branch/master/graph/badge.svg
  :target: https://codecov.io/gh/AllenInstitute/bigfeta
.. image:: https://readthedocs.org/projects/bigfeta/badge/?version=latest
  :target: https://bigfeta.readthedocs.io/en/latest/?badge=latest
  :alt: Documentation Status

BigFeta
#################

Global linear-least squares solution of transforms for alignment of features.

Level of support
################
We are planning on occasional updating this tool with no fixed schedule. Community involvement is encouraged through both issues and pull requests.

Documentation
#############
https://bigfeta.readthedocs.io/en/latest/index.html

Acknowledgement of Government Sponsorship
#########################################

Supported by the Intelligence Advanced Research Projects Activity (IARPA) via Department of Interior / Interior Business Center (DoI/IBC) contract number D16PC00004. The U.S. Government is authorized to reproduce and distribute reprints for Governmental purposes notwithstanding any copyright annotation thereon. Disclaimer: The views and conclusions contained herein are those of the authors and should not be interpreted as necessarily representing the official policies or endorsements, either expressed or implied, of IARPA, DoI/IBC, or the U.S. Government.

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

GitHub Events

Total
  • Create event: 6
  • Release event: 2
  • Issues event: 3
  • Watch event: 2
  • Delete event: 1
  • Issue comment event: 3
  • Push event: 18
  • Pull request event: 9
Last Year
  • Create event: 6
  • Release event: 2
  • Issues event: 3
  • Watch event: 2
  • Delete event: 1
  • Issue comment event: 3
  • Push event: 18
  • Pull request event: 9

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 615
  • Total Committers: 10
  • Avg Commits per committer: 61.5
  • Development Distribution Score (DDS): 0.434
Past Year
  • Commits: 29
  • Committers: 1
  • Avg Commits per committer: 29.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Dan Kapner d****k@.****g 348
djkapner d****k@a****g 162
Russel Torres r****s@g****m 61
Forrest Collman f****n@g****m 20
Gayathri Mahalingam m****g@u****u 8
mlnichols n****m@j****g 6
djkapner d****r@g****m 5
Eric Trautman t****e@j****g 2
Daniel Kapner d****k@h****g 2
Dan Kapner d****k@i****g 1
Committer Domains (Top 20 + Academic)
janelia.hhmi.org: 2 ibs-danielk-ux1.corp.alleninstitute.org: 1 hpc-login.corp.alleninstitute.org: 1 uncw.edu: 1 alleninstitute.org: 1 .alleninstitute.org: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 12
  • Total pull requests: 31
  • Average time to close issues: 7 months
  • Average time to close pull requests: 22 days
  • Total issue authors: 4
  • Total pull request authors: 3
  • Average comments per issue: 1.58
  • Average comments per pull request: 0.52
  • Merged pull requests: 26
  • Bot issues: 0
  • Bot pull requests: 2
Past Year
  • Issues: 1
  • Pull requests: 11
  • Average time to close issues: 2 days
  • Average time to close pull requests: 18 days
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.18
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 2
View more stats
Top Authors
Issue Authors
  • zikai1 (5)
  • RussTorres (5)
  • mlnichols (1)
  • lanery (1)
Pull Request Authors
  • RussTorres (23)
  • djkapner (7)
  • dependabot[bot] (2)
Top Labels
Issue Labels
bug (1)
Pull Request Labels
dependencies (2) python (2) bug (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 73 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 2
  • Total versions: 6
  • Total maintainers: 2
pypi.org: bigfeta

global alignment of features between images

  • Documentation: https://bigfeta.readthedocs.io/
  • License: BSD 2-Clause License Copyright (c) 2022, Allen Institute All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  • Latest release: 1.1.4
    published over 1 year ago
  • Versions: 6
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 73 Last month
Rankings
Dependent packages count: 10.1%
Dependent repos count: 11.6%
Average: 18.2%
Forks count: 19.1%
Stargazers count: 25.0%
Downloads: 25.2%
Maintainers (2)
djkapner RussTorres
Last synced: 11 months ago

Dependencies

docs/requirements.txt pypi
  • argschema <2.0
  • breathe ==4.12.0
  • exhale *
  • h5py *
  • m2r *
  • marshmallow <3.0
  • pathos *
  • pymongo *
  • render-python ==2.2.1
  • sphinx ==1.8.5
  • sphinxcontrib-bibtex *
requirements.txt pypi
  • argschema <2.0
  • descartes *
  • futures *
  • h5py *
  • marshmallow <3.0
  • matplotlib *
  • mpl_scatter_density *
  • numpy *
  • pathos *
  • pymongo *
  • render-python >=2.2.1
  • scipy *
  • shapely *
test_requirements.txt pypi
  • coverage >=4.1 test
  • flake8 >=3.0.4 test
  • jinja2 * test
  • mock >=2.0.0 test
  • pep8 >=1.7.0 test
  • pylint >=1.5.4 test
  • pytest >4.6,<5.0 test
  • pytest-cov >=2.2.1 test
  • pytest-pep8 >=1.0.6 test
  • pytest-xdist >=1.14 test
.github/workflows/release_publish.yml actions
  • actions/checkout v2 composite
  • pypa/gh-action-pypi-publish release/v1 composite
docker-compose.yml docker
  • fcollman/render-ws latest
  • mongo 3.4.2
setup.py pypi